RNA–Protein interactions for RNA: ENST00000481800.1

COL9A3-212, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-212ENST00000481800 PIP4K2BP78356 416 aa26.51■■□□□ 1.83
COL9A3-212ENST00000481800 SENP3Q9H4L4 574 aaPredicted RBP26.5■■□□□ 1.83
COL9A3-212ENST00000481800 LRRC7Q96NW7 1537 aa26.49■■□□□ 1.83
COL9A3-212ENST00000481800 ZFYVE9O95405 1425 aa26.48■■□□□ 1.83
COL9A3-212ENST00000481800 TMEM131LA2VDJ0 1609 aa26.48■■□□□ 1.83
COL9A3-212ENST00000481800 KCNA6P17658 529 aa26.47■■□□□ 1.83
COL9A3-212ENST00000481800 PLEKHG1Q9ULL1 1385 aa26.46■■□□□ 1.83
COL9A3-212ENST00000481800 NUTM2DQ5VT03 806 aaPredicted RBP26.44■■□□□ 1.82
COL9A3-212ENST00000481800 SLC4A1APQ9BWU0 796 aaKnown RBP26.43■■□□□ 1.82
COL9A3-212ENST00000481800 STRCP1A6NGW2 1772 aa26.43■■□□□ 1.82
COL9A3-212ENST00000481800 ZNF326Q5BKZ1 582 aaKnown RBP26.41■■□□□ 1.82
COL9A3-212ENST00000481800 PROSER2Q86WR7 435 aaPredicted RBP26.41■■□□□ 1.82
COL9A3-212ENST00000481800 TBX22Q9Y458 520 aa26.39■■□□□ 1.82
COL9A3-212ENST00000481800 TMEM94Q12767 1356 aa26.36■■□□□ 1.81
COL9A3-212ENST00000481800 MYO5BQ9ULV0 1848 aa26.36■■□□□ 1.81
COL9A3-212ENST00000481800 HSPA1LP34931 641 aa26.35■■□□□ 1.81
COL9A3-212ENST00000481800 SPHKAPQ2M3C7 1700 aa26.35■■□□□ 1.81
COL9A3-212ENST00000481800 TRPM2O94759 1503 aa26.33■■□□□ 1.81
COL9A3-212ENST00000481800 RBM33Q96EV2 1170 aaKnown RBP26.32■■□□□ 1.8
COL9A3-212ENST00000481800 NKTRP30414 1462 aaKnown RBP26.31■■□□□ 1.8
COL9A3-212ENST00000481800 DISP3Q9P2K9 1392 aa26.31■■□□□ 1.8
COL9A3-212ENST00000481800 ADAMTS13Q76LX8 1427 aa26.29■■□□□ 1.8
COL9A3-212ENST00000481800 ALKQ9UM73 1620 aa26.28■■□□□ 1.8
COL9A3-212ENST00000481800 ACIN1Q9UKV3 1341 aaKnown RBP26.28■■□□□ 1.8
COL9A3-212ENST00000481800 PIK3R4Q99570 1358 aa26.27■■□□□ 1.8
COL9A3-212ENST00000481800 NWD1Q149M9 1564 aa26.27■■□□□ 1.8
COL9A3-212ENST00000481800 CLTCL1P53675 1640 aa26.27■■□□□ 1.8
COL9A3-212ENST00000481800 FOXD1Q16676 465 aa26.26■■□□□ 1.79
COL9A3-212ENST00000481800 MPHOSPH9Q99550 1183 aa26.26■■□□□ 1.79
COL9A3-212ENST00000481800 DIP2AQ14689 1571 aa26.25■■□□□ 1.79
COL9A3-212ENST00000481800 MSH6P52701 1360 aa26.24■■□□□ 1.79
COL9A3-212ENST00000481800 C14orf37Q86TY3 774 aa26.23■■□□□ 1.79
COL9A3-212ENST00000481800 SETD5Q9C0A6 1442 aa26.22■■□□□ 1.79
COL9A3-212ENST00000481800 AMOTL2Q9Y2J4 779 aa26.22■■□□□ 1.79
COL9A3-212ENST00000481800 VGFO15240 615 aaPredicted RBP26.2■■□□□ 1.78
COL9A3-212ENST00000481800 XIRP1Q702N8 1843 aaKnown RBP26.18■■□□□ 1.78
COL9A3-212ENST00000481800 RPGRIP1LQ68CZ1 1315 aa26.18■■□□□ 1.78
COL9A3-212ENST00000481800 NCOA3Q9Y6Q9 1424 aa26.17■■□□□ 1.78
COL9A3-212ENST00000481800 CHD2O14647 1828 aaKnown RBP26.17■■□□□ 1.78
COL9A3-212ENST00000481800 NEXMIFQ5QGS0 1516 aa26.17■■□□□ 1.78
COL9A3-212ENST00000481800 SETBP1Q9Y6X0 1596 aa26.16■■□□□ 1.78
COL9A3-212ENST00000481800 CCDC144AA2RUR9 1427 aa26.16■■□□□ 1.78
COL9A3-212ENST00000481800 FAM135BQ49AJ0 1406 aa26.16■■□□□ 1.78
COL9A3-212ENST00000481800 KIF1BO60333 1816 aa26.14■■□□□ 1.78
COL9A3-212ENST00000481800 SLAIN2Q9P270 581 aa26.14■■□□□ 1.78
COL9A3-212ENST00000481800 PTPRUQ92729 1446 aa26.14■■□□□ 1.77
COL9A3-212ENST00000481800 METP08581 1390 aa26.13■■□□□ 1.77
COL9A3-212ENST00000481800 RAB3GAP2Q9H2M9 1393 aa26.12■■□□□ 1.77
COL9A3-212ENST00000481800 C19orf44Q9H6X5 657 aa26.12■■□□□ 1.77
COL9A3-212ENST00000481800 ATF3P18847 181 aa26.1■■□□□ 1.77
COL9A3-212ENST00000481800 RGL3Q3MIN7 710 aa26.1■■□□□ 1.77
COL9A3-212ENST00000481800 CADPS2Q86UW7 1296 aa26.1■■□□□ 1.77
COL9A3-212ENST00000481800 NRXN3Q9Y4C0 1643 aa26.1■■□□□ 1.77
COL9A3-212ENST00000481800 ILDR2Q71H61 639 aa26.04■■□□□ 1.76
COL9A3-212ENST00000481800 SPATA31E1Q6ZUB1 1445 aa26.01■■□□□ 1.75
COL9A3-212ENST00000481800 ROBO1Q9Y6N7 1651 aa26.01■■□□□ 1.75
COL9A3-212ENST00000481800 MED1Q15648 1581 aaPredicted RBP26■■□□□ 1.75
COL9A3-212ENST00000481800 ANKRD30BQ9BXX2 1392 aa26■■□□□ 1.75
COL9A3-212ENST00000481800 PHF23Q9BUL5 403 aaPredicted RBP26■■□□□ 1.75
COL9A3-212ENST00000481800 XRN1Q8IZH2 1706 aaKnown RBP26■■□□□ 1.75
COL9A3-212ENST00000481800 ADGRF5Q8IZF2 1346 aa25.99■■□□□ 1.75
COL9A3-212ENST00000481800 HRCP23327 699 aa25.99■■□□□ 1.75
COL9A3-212ENST00000481800 DCCP43146 1447 aa25.96■■□□□ 1.75
COL9A3-212ENST00000481800 SIPA1L2Q9P2F8 1722 aaPredicted RBP25.95■■□□□ 1.74
COL9A3-212ENST00000481800 PPLO60437 1756 aa25.94■■□□□ 1.74
COL9A3-212ENST00000481800 PTCH1Q13635 1447 aa25.92■■□□□ 1.74
COL9A3-212ENST00000481800 ADGRL3Q9HAR2 1447 aa25.92■■□□□ 1.74
COL9A3-212ENST00000481800 ROBO2Q9HCK4 1378 aa25.91■■□□□ 1.74
COL9A3-212ENST00000481800 BRINP3Q76B58 766 aa25.9■■□□□ 1.74
COL9A3-212ENST00000481800 STK26Q9P289 416 aa25.88■■□□□ 1.73
COL9A3-212ENST00000481800 JCADQ9P266 1359 aa25.87■■□□□ 1.73
COL9A3-212ENST00000481800 MST1RQ04912 1400 aa25.86■■□□□ 1.73
COL9A3-212ENST00000481800 PRAG1Q86YV5 1406 aa25.86■■□□□ 1.73
COL9A3-212ENST00000481800 SETD1AO15047 1707 aaKnown RBP25.85■■□□□ 1.73
COL9A3-212ENST00000481800 TMEM132EQ6IEE7 984 aa25.85■■□□□ 1.73
COL9A3-212ENST00000481800 PIK3C2GO75747 1445 aa25.85■■□□□ 1.73
COL9A3-212ENST00000481800 PHLPP1O60346 1717 aa25.85■■□□□ 1.73
COL9A3-212ENST00000481800 SOCS7O14512 581 aa25.84■■□□□ 1.73
COL9A3-212ENST00000481800 LRPPRCP42704 1394 aaKnown RBP25.82■■□□□ 1.72
COL9A3-212ENST00000481800 C14orf93Q9H972 538 aaKnown RBP25.81■■□□□ 1.72
COL9A3-212ENST00000481800 IFT172Q9UG01 1749 aa25.8■■□□□ 1.72
COL9A3-212ENST00000481800 AHDC1Q5TGY3 1603 aaPredicted RBP25.79■■□□□ 1.72
COL9A3-212ENST00000481800 CFAP70Q5T0N1 1121 aa25.79■■□□□ 1.72
COL9A3-212ENST00000481800 ABCC11Q96J66 1382 aa25.79■■□□□ 1.72
COL9A3-212ENST00000481800 MYOM2P54296 1465 aa25.79■■□□□ 1.72
COL9A3-212ENST00000481800 ASXL1Q8IXJ9 1541 aa25.78■■□□□ 1.72
COL9A3-212ENST00000481800 WAPLQ7Z5K2 1190 aa25.78■■□□□ 1.72
COL9A3-212ENST00000481800 COL16A1Q07092 1604 aaPredicted RBP25.77■■□□□ 1.72
COL9A3-212ENST00000481800 NALCNQ8IZF0 1738 aa25.77■■□□□ 1.72
COL9A3-212ENST00000481800 KDM2AQ9Y2K7 1162 aa25.77■■□□□ 1.72
COL9A3-212ENST00000481800 C1orf167Q5SNV9 1468 aa25.77■■□□□ 1.72
COL9A3-212ENST00000481800 DCAF11Q8TEB1 546 aa25.76■■□□□ 1.71
COL9A3-212ENST00000481800 SPATA31A6Q5VVP1 1343 aa25.76■■□□□ 1.71
COL9A3-212ENST00000481800 DHX57Q6P158 1386 aaKnown RBP25.76■■□□□ 1.71
COL9A3-212ENST00000481800 TECPR2O15040 1411 aa25.76■■□□□ 1.71
COL9A3-212ENST00000481800 YTHDC2Q9H6S0 1430 aaKnown RBP25.76■■□□□ 1.71
COL9A3-212ENST00000481800 NRXN1Q9ULB1 1477 aa25.75■■□□□ 1.71
COL9A3-212ENST00000481800 LRRC59Q96AG4 307 aaKnown RBP25.73■■□□□ 1.71
COL9A3-212ENST00000481800 STAC3Q96MF2 364 aa25.73■■□□□ 1.71
COL9A3-212ENST00000481800 MEX3CQ5U5Q3 659 aaKnown RBP25.72■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms