RNA–Protein interactions for RNA: ENST00000481502.5

SYNE1-225, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 585 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-225ENST00000481502 MYOM2P54296 1465 aa11.83□□□□□ -0.52
SYNE1-225ENST00000481502 DCAF11Q8TEB1 546 aa11.82□□□□□ -0.52
SYNE1-225ENST00000481502 UGGT1Q9NYU2 1555 aa11.81□□□□□ -0.52
SYNE1-225ENST00000481502 RGL3Q3MIN7 710 aa11.81□□□□□ -0.52
SYNE1-225ENST00000481502 TMEM2Q9UHN6 1383 aa11.8□□□□□ -0.52
SYNE1-225ENST00000481502 CHGAP10645 457 aaKnown RBP11.8□□□□□ -0.52
SYNE1-225ENST00000481502 ZNF326Q5BKZ1 582 aaKnown RBP11.8□□□□□ -0.52
SYNE1-225ENST00000481502 NRXN1Q9ULB1 1477 aa11.8□□□□□ -0.52
SYNE1-225ENST00000481502 SLIT1O75093 1534 aa11.8□□□□□ -0.52
SYNE1-225ENST00000481502 ZNF142P52746 1687 aaPredicted RBP11.79□□□□□ -0.52
SYNE1-225ENST00000481502 ARHGAP23Q9P227 1491 aa11.79□□□□□ -0.52
SYNE1-225ENST00000481502 CEP170BQ9Y4F5 1589 aaPredicted RBP11.79□□□□□ -0.52
SYNE1-225ENST00000481502 MYO3AQ8NEV4 1616 aa11.78□□□□□ -0.52
SYNE1-225ENST00000481502 UBR1Q8IWV7 1749 aa11.78□□□□□ -0.52
SYNE1-225ENST00000481502 EID1Q9Y6B2 187 aa11.78□□□□□ -0.52
SYNE1-225ENST00000481502 PRAG1Q86YV5 1406 aa11.77□□□□□ -0.52
SYNE1-225ENST00000481502 NEXMIFQ5QGS0 1516 aa11.77□□□□□ -0.52
SYNE1-225ENST00000481502 RIMS2Q9UQ26 1411 aa11.77□□□□□ -0.53
SYNE1-225ENST00000481502 IFT172Q9UG01 1749 aa11.75□□□□□ -0.53
SYNE1-225ENST00000481502 PPLO60437 1756 aa11.75□□□□□ -0.53
SYNE1-225ENST00000481502 ANKLE2Q86XL3 938 aa11.75□□□□□ -0.53
SYNE1-225ENST00000481502 C14orf93Q9H972 538 aaKnown RBP11.75□□□□□ -0.53
SYNE1-225ENST00000481502 KDM2AQ9Y2K7 1162 aa11.74□□□□□ -0.53
SYNE1-225ENST00000481502 GPRASP1Q5JY77 1395 aa11.74□□□□□ -0.53
SYNE1-225ENST00000481502 PLEKHG1Q9ULL1 1385 aa11.74□□□□□ -0.53
SYNE1-225ENST00000481502 PIK3C2GO75747 1445 aa11.74□□□□□ -0.53
SYNE1-225ENST00000481502 KIAA1210Q9ULL0 1709 aa11.74□□□□□ -0.53
SYNE1-225ENST00000481502 SLC24A1O60721 1099 aa11.73□□□□□ -0.53
SYNE1-225ENST00000481502 TXNDC2Q86VQ3 553 aa11.73□□□□□ -0.53
SYNE1-225ENST00000481502 RALGAPBQ86X10 1494 aa11.72□□□□□ -0.53
SYNE1-225ENST00000481502 ADGRF5Q8IZF2 1346 aa11.72□□□□□ -0.53
SYNE1-225ENST00000481502 NBPF8Q3BBV2 869 aa11.72□□□□□ -0.53
SYNE1-225ENST00000481502 LAMC1P11047 1609 aa11.71□□□□□ -0.53
SYNE1-225ENST00000481502 MED14O60244 1454 aa11.71□□□□□ -0.53
SYNE1-225ENST00000481502 SCAF11Q99590 1463 aaKnown RBP11.71□□□□□ -0.53
SYNE1-225ENST00000481502 TBX22Q9Y458 520 aa11.71□□□□□ -0.53
SYNE1-225ENST00000481502 SETBP1Q9Y6X0 1596 aa11.71□□□□□ -0.54
SYNE1-225ENST00000481502 PIK3R4Q99570 1358 aa11.7□□□□□ -0.54
SYNE1-225ENST00000481502 MYO5BQ9ULV0 1848 aa11.7□□□□□ -0.54
SYNE1-225ENST00000481502 LTKP29376 864 aa11.7□□□□□ -0.54
SYNE1-225ENST00000481502 SIRT1Q96EB6 747 aa11.69□□□□□ -0.54
SYNE1-225ENST00000481502 ROCK2O75116 1388 aaKnown RBP11.68□□□□□ -0.54
SYNE1-225ENST00000481502 DIP2AQ14689 1571 aa11.68□□□□□ -0.54
SYNE1-225ENST00000481502 LMTK3Q96Q04 1460 aa11.68□□□□□ -0.54
SYNE1-225ENST00000481502 TRPM1Q7Z4N2 1603 aa11.68□□□□□ -0.54
SYNE1-225ENST00000481502 EIF4G2P78344 907 aaKnown RBP eCLIP11.67□□□□□ -0.54
SYNE1-225ENST00000481502 CFAP70Q5T0N1 1121 aa11.67□□□□□ -0.54
SYNE1-225ENST00000481502 CARD11Q9BXL7 1154 aa11.67□□□□□ -0.54
SYNE1-225ENST00000481502 DMRT2Q9Y5R5 561 aa11.67□□□□□ -0.54
SYNE1-225ENST00000481502 EIF3AQ14152 1382 aaKnown RBP11.66□□□□□ -0.54
SYNE1-225ENST00000481502 ALKQ9UM73 1620 aa11.65□□□□□ -0.54
SYNE1-225ENST00000481502 NPHP4O75161 1426 aaPredicted RBP11.65□□□□□ -0.54
SYNE1-225ENST00000481502 ADAMTS13Q76LX8 1427 aa11.65□□□□□ -0.54
SYNE1-225ENST00000481502 ABCC11Q96J66 1382 aa11.65□□□□□ -0.55
SYNE1-225ENST00000481502 ADGRB1O14514 1584 aa11.64□□□□□ -0.55
SYNE1-225ENST00000481502 NBPF1Q3BBV0 1214 aa11.63□□□□□ -0.55
SYNE1-225ENST00000481502 NUTM2DQ5VT03 806 aaPredicted RBP11.63□□□□□ -0.55
SYNE1-225ENST00000481502 LRPPRCP42704 1394 aaKnown RBP11.63□□□□□ -0.55
SYNE1-225ENST00000481502 TECPR2O15040 1411 aa11.62□□□□□ -0.55
SYNE1-225ENST00000481502 NRXN3Q9Y4C0 1643 aa11.62□□□□□ -0.55
SYNE1-225ENST00000481502 BCANQ96GW7 911 aa11.62□□□□□ -0.55
SYNE1-225ENST00000481502 SBNO2Q9Y2G9 1366 aa11.62□□□□□ -0.55
SYNE1-225ENST00000481502 YTHDC2Q9H6S0 1430 aaKnown RBP11.61□□□□□ -0.55
SYNE1-225ENST00000481502 DLC1Q96QB1 1528 aa11.61□□□□□ -0.55
SYNE1-225ENST00000481502 POLR1AO95602 1720 aaPredicted RBP11.61□□□□□ -0.55
SYNE1-225ENST00000481502 USP47Q96K76 1375 aa11.61□□□□□ -0.55
SYNE1-225ENST00000481502 FAM135BQ49AJ0 1406 aa11.6□□□□□ -0.55
SYNE1-225ENST00000481502 PUS7Q96PZ0 661 aaKnown RBP11.6□□□□□ -0.55
SYNE1-225ENST00000481502 IQGAP1P46940 1657 aa11.59□□□□□ -0.55
SYNE1-225ENST00000481502 KCNA6P17658 529 aa11.59□□□□□ -0.55
SYNE1-225ENST00000481502 SETD1AO15047 1707 aaKnown RBP11.59□□□□□ -0.55
SYNE1-225ENST00000481502 NCKAP5LQ9HCH0 1330 aa11.59□□□□□ -0.55
SYNE1-225ENST00000481502 METP08581 1390 aa11.58□□□□□ -0.56
SYNE1-225ENST00000481502 CDCA8Q53HL2 280 aa11.58□□□□□ -0.56
SYNE1-225ENST00000481502 PTCH1Q13635 1447 aa11.58□□□□□ -0.56
SYNE1-225ENST00000481502 HSPA5P11021 654 aaKnown RBP11.57□□□□□ -0.56
SYNE1-225ENST00000481502 HSPA2P54652 639 aa11.57□□□□□ -0.56
SYNE1-225ENST00000481502 TMEM132EQ6IEE7 984 aa11.57□□□□□ -0.56
SYNE1-225ENST00000481502 SLC26A8Q96RN1 970 aa11.57□□□□□ -0.56
SYNE1-225ENST00000481502 NCOA3Q9Y6Q9 1424 aa11.57□□□□□ -0.56
SYNE1-225ENST00000481502 CENPJQ9HC77 1338 aaPredicted RBP11.57□□□□□ -0.56
SYNE1-225ENST00000481502 ASXL1Q8IXJ9 1541 aa11.56□□□□□ -0.56
SYNE1-225ENST00000481502 ST20-MTHFSA0A0A6YYL1 179 aa11.56□□□□□ -0.56
SYNE1-225ENST00000481502 ZNF316A6NFI3 1004 aaPredicted RBP11.56□□□□□ -0.56
SYNE1-225ENST00000481502 AMOTL2Q9Y2J4 779 aa11.56□□□□□ -0.56
SYNE1-225ENST00000481502 CPS1P31327 1500 aa11.55□□□□□ -0.56
SYNE1-225ENST00000481502 KNDC1Q76NI1 1749 aa11.55□□□□□ -0.56
SYNE1-225ENST00000481502 TESK2Q96S53 571 aa11.55□□□□□ -0.56
SYNE1-225ENST00000481502 TRAK1Q9UPV9 953 aa11.55□□□□□ -0.56
SYNE1-225ENST00000481502 STRCQ7RTU9 1775 aa11.54□□□□□ -0.56
SYNE1-225ENST00000481502 TMF1P82094 1093 aa11.54□□□□□ -0.56
SYNE1-225ENST00000481502 NKTRP30414 1462 aaKnown RBP11.54□□□□□ -0.56
SYNE1-225ENST00000481502 CHD2O14647 1828 aaKnown RBP11.53□□□□□ -0.56
SYNE1-225ENST00000481502 POGKQ9P215 609 aa11.53□□□□□ -0.56
SYNE1-225ENST00000481502 NWD1Q149M9 1564 aa11.53□□□□□ -0.56
SYNE1-225ENST00000481502 PTPRUQ92729 1446 aa11.52□□□□□ -0.56
SYNE1-225ENST00000481502 XRN1Q8IZH2 1706 aaKnown RBP11.52□□□□□ -0.56
SYNE1-225ENST00000481502 PRAM1Q96QH2 718 aa11.51□□□□□ -0.57
SYNE1-225ENST00000481502 STK26Q9P289 416 aa11.51□□□□□ -0.57
SYNE1-225ENST00000481502 EVC2Q86UK5 1308 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms