RNA–Protein interactions for RNA: ENST00000480139.5

LIME1-205, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3 BASIC

Gene LIME1, Length 819 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-205ENST00000480139 IQGAP1P46940 1657 aa28.96■■■□□ 2.23
LIME1-205ENST00000480139 SPATA31E1Q6ZUB1 1445 aa28.95■■■□□ 2.23
LIME1-205ENST00000480139 LTKP29376 864 aa28.94■■■□□ 2.22
LIME1-205ENST00000480139 HDGFP51858 240 aaKnown RBP28.94■■■□□ 2.22
LIME1-205ENST00000480139 TXNDC2Q86VQ3 553 aa28.94■■■□□ 2.22
LIME1-205ENST00000480139 NPHP4O75161 1426 aaPredicted RBP28.94■■■□□ 2.22
LIME1-205ENST00000480139 NEXMIFQ5QGS0 1516 aa28.93■■■□□ 2.22
LIME1-205ENST00000480139 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.92■■■□□ 2.22
LIME1-205ENST00000480139 PPLO60437 1756 aa28.89■■■□□ 2.22
LIME1-205ENST00000480139 RPGRIP1LQ68CZ1 1315 aa28.89■■■□□ 2.21
LIME1-205ENST00000480139 ZNF326Q5BKZ1 582 aaKnown RBP28.88■■■□□ 2.21
LIME1-205ENST00000480139 IFT172Q9UG01 1749 aa28.88■■■□□ 2.21
LIME1-205ENST00000480139 PLEKHG1Q9ULL1 1385 aa28.87■■■□□ 2.21
LIME1-205ENST00000480139 PPP1R15AO75807 674 aaPredicted RBP28.83■■■□□ 2.21
LIME1-205ENST00000480139 SETBP1Q9Y6X0 1596 aa28.8■■■□□ 2.2
LIME1-205ENST00000480139 DIP2AQ14689 1571 aa28.79■■■□□ 2.2
LIME1-205ENST00000480139 NRXN3Q9Y4C0 1643 aa28.77■■■□□ 2.2
LIME1-205ENST00000480139 VGFO15240 615 aaPredicted RBP28.77■■■□□ 2.2
LIME1-205ENST00000480139 RGL3Q3MIN7 710 aa28.77■■■□□ 2.2
LIME1-205ENST00000480139 NUTM2DQ5VT03 806 aaPredicted RBP28.75■■■□□ 2.19
LIME1-205ENST00000480139 MYOM2P54296 1465 aa28.74■■■□□ 2.19
LIME1-205ENST00000480139 ADAMTS13Q76LX8 1427 aa28.73■■■□□ 2.19
LIME1-205ENST00000480139 TBX22Q9Y458 520 aa28.69■■■□□ 2.18
LIME1-205ENST00000480139 NRXN1Q9ULB1 1477 aa28.69■■■□□ 2.18
LIME1-205ENST00000480139 LTBP4Q8N2S1 1624 aa28.69■■■□□ 2.18
LIME1-205ENST00000480139 BCANQ96GW7 911 aa28.68■■■□□ 2.18
LIME1-205ENST00000480139 STAC3Q96MF2 364 aa28.68■■■□□ 2.18
LIME1-205ENST00000480139 SLC26A8Q96RN1 970 aa28.67■■■□□ 2.18
LIME1-205ENST00000480139 SETD1AO15047 1707 aaKnown RBP28.66■■■□□ 2.18
LIME1-205ENST00000480139 SIN3AQ96ST3 1273 aa28.66■■■□□ 2.18
LIME1-205ENST00000480139 PIK3C2GO75747 1445 aa28.66■■■□□ 2.18
LIME1-205ENST00000480139 ZNF335Q9H4Z2 1342 aaPredicted RBP28.66■■■□□ 2.18
LIME1-205ENST00000480139 CLSPNQ9HAW4 1339 aa28.66■■■□□ 2.18
LIME1-205ENST00000480139 PIK3R4Q99570 1358 aa28.65■■■□□ 2.18
LIME1-205ENST00000480139 NWD1Q149M9 1564 aa28.65■■■□□ 2.18
LIME1-205ENST00000480139 ADGRF5Q8IZF2 1346 aa28.65■■■□□ 2.18
LIME1-205ENST00000480139 CHD2O14647 1828 aaKnown RBP28.64■■■□□ 2.18
LIME1-205ENST00000480139 STRCP1A6NGW2 1772 aa28.64■■■□□ 2.18
LIME1-205ENST00000480139 CPS1P31327 1500 aa28.64■■■□□ 2.17
LIME1-205ENST00000480139 ALKQ9UM73 1620 aa28.63■■■□□ 2.17
LIME1-205ENST00000480139 LAMC1P11047 1609 aa28.61■■■□□ 2.17
LIME1-205ENST00000480139 DCAF11Q8TEB1 546 aa28.6■■■□□ 2.17
LIME1-205ENST00000480139 NEUROD1Q13562 356 aa28.58■■■□□ 2.17
LIME1-205ENST00000480139 SENP3Q9H4L4 574 aaPredicted RBP28.58■■■□□ 2.17
LIME1-205ENST00000480139 NKTRP30414 1462 aaKnown RBP28.57■■■□□ 2.16
LIME1-205ENST00000480139 KCNA6P17658 529 aa28.56■■■□□ 2.16
LIME1-205ENST00000480139 XRN1Q8IZH2 1706 aaKnown RBP28.55■■■□□ 2.16
LIME1-205ENST00000480139 METP08581 1390 aa28.54■■■□□ 2.16
LIME1-205ENST00000480139 IQSEC2Q5JU85 1478 aa28.53■■■□□ 2.16
LIME1-205ENST00000480139 L3MBTL2Q969R5 705 aa28.52■■■□□ 2.16
LIME1-205ENST00000480139 PTPRUQ92729 1446 aa28.52■■■□□ 2.16
LIME1-205ENST00000480139 KDM2AQ9Y2K7 1162 aa28.51■■■□□ 2.15
LIME1-205ENST00000480139 KIAA1210Q9ULL0 1709 aa28.5■■■□□ 2.15
LIME1-205ENST00000480139 CCER1Q8TC90 406 aaPredicted RBP28.5■■■□□ 2.15
LIME1-205ENST00000480139 C14orf93Q9H972 538 aaKnown RBP28.5■■■□□ 2.15
LIME1-205ENST00000480139 PRAG1Q86YV5 1406 aa28.5■■■□□ 2.15
LIME1-205ENST00000480139 ASXL1Q8IXJ9 1541 aa28.49■■■□□ 2.15
LIME1-205ENST00000480139 LRRC7Q96NW7 1537 aa28.49■■■□□ 2.15
LIME1-205ENST00000480139 TONSLQ96HA7 1378 aa28.49■■■□□ 2.15
LIME1-205ENST00000480139 CERKQ8TCT0 537 aa28.47■■■□□ 2.15
LIME1-205ENST00000480139 AMOTL2Q9Y2J4 779 aa28.45■■■□□ 2.14
LIME1-205ENST00000480139 XIRP1Q702N8 1843 aaKnown RBP28.45■■■□□ 2.14
LIME1-205ENST00000480139 KNDC1Q76NI1 1749 aa28.44■■■□□ 2.14
LIME1-205ENST00000480139 ADGRB1O14514 1584 aa28.43■■■□□ 2.14
LIME1-205ENST00000480139 CFAP70Q5T0N1 1121 aa28.43■■■□□ 2.14
LIME1-205ENST00000480139 PTCH1Q13635 1447 aa28.43■■■□□ 2.14
LIME1-205ENST00000480139 TECPR2O15040 1411 aa28.41■■■□□ 2.14
LIME1-205ENST00000480139 LRPPRCP42704 1394 aaKnown RBP28.4■■■□□ 2.14
LIME1-205ENST00000480139 TIMELESSQ9UNS1 1208 aa28.4■■■□□ 2.14
LIME1-205ENST00000480139 NCOA3Q9Y6Q9 1424 aa28.4■■■□□ 2.14
LIME1-205ENST00000480139 YTHDC2Q9H6S0 1430 aaKnown RBP28.39■■■□□ 2.14
LIME1-205ENST00000480139 PROSER2Q86WR7 435 aaPredicted RBP28.38■■■□□ 2.13
LIME1-205ENST00000480139 TRPM1Q7Z4N2 1603 aa28.38■■■□□ 2.13
LIME1-205ENST00000480139 TMEM94Q12767 1356 aa28.37■■■□□ 2.13
LIME1-205ENST00000480139 ABCC11Q96J66 1382 aa28.37■■■□□ 2.13
LIME1-205ENST00000480139 TMEM132EQ6IEE7 984 aa28.36■■■□□ 2.13
LIME1-205ENST00000480139 ROBO2Q9HCK4 1378 aa28.33■■■□□ 2.13
LIME1-205ENST00000480139 DLC1Q96QB1 1528 aa28.33■■■□□ 2.13
LIME1-205ENST00000480139 FAM135BQ49AJ0 1406 aa28.29■■■□□ 2.12
LIME1-205ENST00000480139 SIRT1Q96EB6 747 aa28.29■■■□□ 2.12
LIME1-205ENST00000480139 STK26Q9P289 416 aa28.27■■■□□ 2.12
LIME1-205ENST00000480139 NALCNQ8IZF0 1738 aa28.26■■■□□ 2.12
LIME1-205ENST00000480139 NBPF8Q3BBV2 869 aa28.26■■■□□ 2.11
LIME1-205ENST00000480139 RALGAPBQ86X10 1494 aa28.26■■■□□ 2.11
LIME1-205ENST00000480139 MSH6P52701 1360 aa28.25■■■□□ 2.11
LIME1-205ENST00000480139 ARHGEF28Q8N1W1 1705 aaKnown RBP28.25■■■□□ 2.11
LIME1-205ENST00000480139 ADGRL3Q9HAR2 1447 aa28.25■■■□□ 2.11
LIME1-205ENST00000480139 NBPF1Q3BBV0 1214 aa28.24■■■□□ 2.11
LIME1-205ENST00000480139 RBM33Q96EV2 1170 aaKnown RBP28.24■■■□□ 2.11
LIME1-205ENST00000480139 DCCP43146 1447 aa28.24■■■□□ 2.11
LIME1-205ENST00000480139 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.23■■■□□ 2.11
LIME1-205ENST00000480139 GPRASP1Q5JY77 1395 aa28.23■■■□□ 2.11
LIME1-205ENST00000480139 C19orf44Q9H6X5 657 aa28.21■■■□□ 2.11
LIME1-205ENST00000480139 ROCK2O75116 1388 aaKnown RBP28.21■■■□□ 2.11
LIME1-205ENST00000480139 C14orf37Q86TY3 774 aa28.18■■■□□ 2.1
LIME1-205ENST00000480139 TRAK1Q9UPV9 953 aa28.18■■■□□ 2.1
LIME1-205ENST00000480139 PLEKHH1Q9ULM0 1364 aa28.17■■■□□ 2.1
LIME1-205ENST00000480139 TOM1O60784 492 aa28.17■■■□□ 2.1
LIME1-205ENST00000480139 CDC42BPGQ6DT37 1551 aa28.16■■■□□ 2.1
LIME1-205ENST00000480139 WAPLQ7Z5K2 1190 aa28.16■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms