RNA–Protein interactions for RNA: ENST00000479307.5

RFC4-212, Transcript of replication factor C subunit 4, humanhuman

TSL 2

Gene RFC4, Length 1,043 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-212ENST00000479307 BEGAINQ9BUH8 593 aa10.12□□□□□ -0.79
RFC4-212ENST00000479307 TMEM134Q9H6X4 195 aa10.12□□□□□ -0.79
RFC4-212ENST00000479307 TIMELESSQ9UNS1 1208 aa10.12□□□□□ -0.79
RFC4-212ENST00000479307 POTEEQ6S8J3 1075 aa10.11□□□□□ -0.79
RFC4-212ENST00000479307 KIAA1468Q9P260 1216 aa10.11□□□□□ -0.79
RFC4-212ENST00000479307 DIXDC1Q155Q3 683 aa10.1□□□□□ -0.79
RFC4-212ENST00000479307 C3orf80F5H4A9 247 aa10.09□□□□□ -0.79
RFC4-212ENST00000479307 PCMTD1Q96MG8 357 aaPredicted RBP10.09□□□□□ -0.79
RFC4-212ENST00000479307 CD46P15529 392 aa10.07□□□□□ -0.8
RFC4-212ENST00000479307 DMRTA1Q5VZB9 504 aa10.07□□□□□ -0.8
RFC4-212ENST00000479307 MYT1LQ9UL68 1186 aa10.07□□□□□ -0.8
RFC4-212ENST00000479307 AXIN2Q9Y2T1 843 aa10.07□□□□□ -0.8
RFC4-212ENST00000479307 SMAPO00193 183 aa10.06□□□□□ -0.8
RFC4-212ENST00000479307 SKIV2LQ15477 1246 aaKnown RBP10.06□□□□□ -0.8
RFC4-212ENST00000479307 C14orf37Q86TY3 774 aa10.06□□□□□ -0.8
RFC4-212ENST00000479307 VPS9D1Q9Y2B5 631 aa10.06□□□□□ -0.8
RFC4-212ENST00000479307 TK2O00142 265 aa10.05□□□□□ -0.8
RFC4-212ENST00000479307 NBPF3Q9H094 633 aa10.05□□□□□ -0.8
RFC4-212ENST00000479307 FAM98CQ17RN3 349 aaKnown RBP10.04□□□□□ -0.8
RFC4-212ENST00000479307 RSPH4AQ5TD94 716 aa10.04□□□□□ -0.8
RFC4-212ENST00000479307 LAPTM4BQ86VI4 370 aa10.04□□□□□ -0.8
RFC4-212ENST00000479307 DDX11L8A8MPP1 907 aa10.03□□□□□ -0.8
RFC4-212ENST00000479307 HDGFP51858 240 aaKnown RBP10.03□□□□□ -0.8
RFC4-212ENST00000479307 SLC4A3P48751 1232 aa10.02□□□□□ -0.81
RFC4-212ENST00000479307 MYSM1Q5VVJ2 828 aa10.02□□□□□ -0.81
RFC4-212ENST00000479307 TBC1D2Q9BYX2 928 aa10.02□□□□□ -0.81
RFC4-212ENST00000479307 SEPT9Q9UHD8 586 aaPredicted RBP10.01□□□□□ -0.81
RFC4-212ENST00000479307 CLK2P49760 499 aaKnown RBP10□□□□□ -0.81
RFC4-212ENST00000479307 NUTM1Q86Y26 1132 aa10□□□□□ -0.81
RFC4-212ENST00000479307 BHMG1C9JSJ3 638 aaPredicted RBP9.99□□□□□ -0.81
RFC4-212ENST00000479307 SWT1Q5T5J6 900 aaKnown RBP9.99□□□□□ -0.81
RFC4-212ENST00000479307 ANKRD13DQ6ZTN6 518 aa9.99□□□□□ -0.81
RFC4-212ENST00000479307 RDH13Q8NBN7 331 aa9.99□□□□□ -0.81
RFC4-212ENST00000479307 SPIRE2Q8WWL2 714 aa9.99□□□□□ -0.81
RFC4-212ENST00000479307 LSM11P83369 360 aaKnown RBP eCLIP9.98□□□□□ -0.81
RFC4-212ENST00000479307 GJA5P36382 358 aa9.97□□□□□ -0.81
RFC4-212ENST00000479307 FLIIQ13045 1269 aa9.97□□□□□ -0.81
RFC4-212ENST00000479307 TUSC1Q2TAM9 212 aa9.97□□□□□ -0.81
RFC4-212ENST00000479307 ADGRD1Q6QNK2 874 aa9.97□□□□□ -0.81
RFC4-212ENST00000479307 SLF2Q8IX21 1173 aa9.97□□□□□ -0.81
RFC4-212ENST00000479307 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.97□□□□□ -0.81
RFC4-212ENST00000479307 POLR3EQ9NVU0 708 aa9.97□□□□□ -0.81
RFC4-212ENST00000479307 USP46P62068 366 aa9.96□□□□□ -0.82
RFC4-212ENST00000479307 MRPL50Q8N5N7 158 aaKnown RBP9.96□□□□□ -0.82
RFC4-212ENST00000479307 NISCHQ9Y2I1 1504 aa9.96□□□□□ -0.82
RFC4-212ENST00000479307 KDM4AO75164 1064 aa9.95□□□□□ -0.82
RFC4-212ENST00000479307 GCGRP47871 477 aa9.95□□□□□ -0.82
RFC4-212ENST00000479307 NECTIN2Q92692 538 aa9.95□□□□□ -0.82
RFC4-212ENST00000479307 ATP1B4Q9UN42 357 aaPredicted RBP9.95□□□□□ -0.82
RFC4-212ENST00000479307 RIC3Q7Z5B4 369 aa9.94□□□□□ -0.82
RFC4-212ENST00000479307 ZFRQ96KR1 1074 aaKnown RBP9.94□□□□□ -0.82
RFC4-212ENST00000479307 SPTLC1O15269 473 aa9.93□□□□□ -0.82
RFC4-212ENST00000479307 SLC10A3P09131 477 aa9.93□□□□□ -0.82
RFC4-212ENST00000479307 RSBN1LQ6PCB5 846 aaPredicted RBP9.93□□□□□ -0.82
RFC4-212ENST00000479307 SAMD7Q7Z3H4 446 aa9.93□□□□□ -0.82
RFC4-212ENST00000479307 PROCA1Q8NCQ7 364 aaPredicted RBP9.93□□□□□ -0.82
RFC4-212ENST00000479307 HRO43593 1189 aa9.92□□□□□ -0.82
RFC4-212ENST00000479307 LIMD1Q9UGP4 676 aa9.92□□□□□ -0.82
RFC4-212ENST00000479307 MOXD2PA6NHM9 499 aa9.91□□□□□ -0.82
RFC4-212ENST00000479307 PPP2R2DQ66LE6 453 aa9.9□□□□□ -0.82
RFC4-212ENST00000479307 STAC3Q96MF2 364 aa9.9□□□□□ -0.82
RFC4-212ENST00000479307 HOXA2O43364 376 aa9.89□□□□□ -0.83
RFC4-212ENST00000479307 GRIPAP1Q4V328 841 aa9.89□□□□□ -0.83
RFC4-212ENST00000479307 LRCH3Q96II8 777 aa9.89□□□□□ -0.83
RFC4-212ENST00000479307 PRPF38BQ5VTL8 546 aaKnown RBP9.88□□□□□ -0.83
RFC4-212ENST00000479307 RNF40O75150 1001 aa9.87□□□□□ -0.83
RFC4-212ENST00000479307 CFHP08603 1231 aa9.87□□□□□ -0.83
RFC4-212ENST00000479307 RFC5P40937 340 aa9.87□□□□□ -0.83
RFC4-212ENST00000479307 KMT5BQ4FZB7 885 aa9.87□□□□□ -0.83
RFC4-212ENST00000479307 ZMYND15Q9H091 742 aa9.87□□□□□ -0.83
RFC4-212ENST00000479307 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.87□□□□□ -0.83
RFC4-212ENST00000479307 GOLGA8CPA6NN73 597 aa9.86□□□□□ -0.83
RFC4-212ENST00000479307 NDUFV2P19404 249 aa9.86□□□□□ -0.83
RFC4-212ENST00000479307 TMEM259Q4ZIN3 620 aa9.86□□□□□ -0.83
RFC4-212ENST00000479307 BANK1Q8NDB2 785 aa9.86□□□□□ -0.83
RFC4-212ENST00000479307 ANKK1Q8NFD2 765 aa9.86□□□□□ -0.83
RFC4-212ENST00000479307 PRR14Q9BWN1 585 aa9.86□□□□□ -0.83
RFC4-212ENST00000479307 LILRB3O75022 631 aa9.85□□□□□ -0.83
RFC4-212ENST00000479307 FDX1P10109 184 aa9.85□□□□□ -0.83
RFC4-212ENST00000479307 MCM6Q14566 821 aa9.84□□□□□ -0.83
RFC4-212ENST00000479307 ZBTB3Q9H5J0 574 aa9.84□□□□□ -0.83
RFC4-212ENST00000479307 SPDYE5A6NIY4 337 aa9.83□□□□□ -0.84
RFC4-212ENST00000479307 FUT2Q10981 343 aa9.83□□□□□ -0.84
RFC4-212ENST00000479307 SOWAHBA6NEL2 793 aa9.82□□□□□ -0.84
RFC4-212ENST00000479307 ATP6V1AP38606 617 aa9.82□□□□□ -0.84
RFC4-212ENST00000479307 CSPP1Q1MSJ5 1256 aa9.82□□□□□ -0.84
RFC4-212ENST00000479307 PCDHB15Q9Y5E8 787 aa9.82□□□□□ -0.84
RFC4-212ENST00000479307 ACTN4O43707 911 aaKnown RBP9.81□□□□□ -0.84
RFC4-212ENST00000479307 QPCTQ16769 361 aa9.81□□□□□ -0.84
RFC4-212ENST00000479307 NUTM2BA6NNL0 878 aaPredicted RBP9.8□□□□□ -0.84
RFC4-212ENST00000479307 NUTM2EB1AL46 878 aaPredicted RBP9.8□□□□□ -0.84
RFC4-212ENST00000479307 SOCS7O14512 581 aa9.8□□□□□ -0.84
RFC4-212ENST00000479307 UBTFP17480 764 aaKnown RBP9.8□□□□□ -0.84
RFC4-212ENST00000479307 NUTM2DQ5VT03 806 aaPredicted RBP9.8□□□□□ -0.84
RFC4-212ENST00000479307 NUTM2AQ8IVF1 878 aaPredicted RBP9.8□□□□□ -0.84
RFC4-212ENST00000479307 WNT2BQ93097 391 aa9.8□□□□□ -0.84
RFC4-212ENST00000479307 HRCP23327 699 aa9.79□□□□□ -0.84
RFC4-212ENST00000479307 PPP4CP60510 307 aa9.79□□□□□ -0.84
RFC4-212ENST00000479307 MTMR2Q13614 643 aa9.79□□□□□ -0.84
RFC4-212ENST00000479307 FBXO31Q5XUX0 539 aaPredicted RBP9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms