RNA–Protein interactions for RNA: ENST00000479177.1

USP48-208, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-208ENST00000479177 FOXK1P85037 733 aa10.37□□□□□ -0.75
USP48-208ENST00000479177 CDK13Q14004 1512 aaKnown RBP10.37□□□□□ -0.75
USP48-208ENST00000479177 UACAQ9BZF9 1416 aa10.36□□□□□ -0.75
USP48-208ENST00000479177 UHRF1BP1LA0JNW5 1464 aa10.36□□□□□ -0.75
USP48-208ENST00000479177 TTBK1Q5TCY1 1321 aaPredicted RBP10.35□□□□□ -0.75
USP48-208ENST00000479177 PDE4AP27815 886 aa10.35□□□□□ -0.75
USP48-208ENST00000479177 PPP4R3BQ5MIZ7 849 aa10.35□□□□□ -0.75
USP48-208ENST00000479177 KCNK17Q96T54 332 aa10.35□□□□□ -0.75
USP48-208ENST00000479177 RIMBP3CA6NJZ7 1639 aa10.35□□□□□ -0.75
USP48-208ENST00000479177 RIMBP3BA6NNM3 1639 aa10.35□□□□□ -0.75
USP48-208ENST00000479177 RIMBP3Q9UFD9 1639 aa10.35□□□□□ -0.75
USP48-208ENST00000479177 LRRC9Q6ZRR7 1453 aa10.35□□□□□ -0.75
USP48-208ENST00000479177 EHBP1L1Q8N3D4 1523 aa10.34□□□□□ -0.75
USP48-208ENST00000479177 ADCY10Q96PN6 1610 aa10.34□□□□□ -0.75
USP48-208ENST00000479177 HAP1P54257 671 aaPredicted RBP10.34□□□□□ -0.75
USP48-208ENST00000479177 PPP1R15BQ5SWA1 713 aa10.34□□□□□ -0.75
USP48-208ENST00000479177 MAGI3Q5TCQ9 1506 aa10.33□□□□□ -0.76
USP48-208ENST00000479177 PTPN5P54829 565 aa10.33□□□□□ -0.76
USP48-208ENST00000479177 VPS9D1Q9Y2B5 631 aa10.33□□□□□ -0.76
USP48-208ENST00000479177 MFSD10Q14728 455 aa10.32□□□□□ -0.76
USP48-208ENST00000479177 KANK4Q5T7N3 995 aaPredicted RBP10.32□□□□□ -0.76
USP48-208ENST00000479177 DDX27Q96GQ7 796 aaKnown RBP10.32□□□□□ -0.76
USP48-208ENST00000479177 ATP1B4Q9UN42 357 aaPredicted RBP10.32□□□□□ -0.76
USP48-208ENST00000479177 ATP10BO94823 1461 aa10.31□□□□□ -0.76
USP48-208ENST00000479177 STAC3Q96MF2 364 aa10.31□□□□□ -0.76
USP48-208ENST00000479177 ZCCHC11Q5TAX3 1644 aaKnown RBP10.3□□□□□ -0.76
USP48-208ENST00000479177 KDM5BQ9UGL1 1544 aa10.3□□□□□ -0.76
USP48-208ENST00000479177 PPARGC1BQ86YN6 1023 aaKnown RBP10.3□□□□□ -0.76
USP48-208ENST00000479177 SUPT6HQ7KZ85 1726 aaKnown RBP10.29□□□□□ -0.76
USP48-208ENST00000479177 MTUS2Q5JR59 1369 aa10.28□□□□□ -0.76
USP48-208ENST00000479177 ARID3CA6NKF2 412 aa10.28□□□□□ -0.76
USP48-208ENST00000479177 TROQ12816 1431 aaPredicted RBP10.27□□□□□ -0.77
USP48-208ENST00000479177 TBC1D12O60347 775 aa10.26□□□□□ -0.77
USP48-208ENST00000479177 UPF1Q92900 1129 aaKnown RBP eCLIP10.26□□□□□ -0.77
USP48-208ENST00000479177 KIF14Q15058 1648 aa10.25□□□□□ -0.77
USP48-208ENST00000479177 NCOA2Q15596 1464 aa10.25□□□□□ -0.77
USP48-208ENST00000479177 EMILIN3Q9NT22 766 aa10.25□□□□□ -0.77
USP48-208ENST00000479177 BHMG1C9JSJ3 638 aaPredicted RBP10.24□□□□□ -0.77
USP48-208ENST00000479177 ZNF454Q8N9F8 522 aa10.24□□□□□ -0.77
USP48-208ENST00000479177 KDM2AQ9Y2K7 1162 aa10.24□□□□□ -0.77
USP48-208ENST00000479177 OXER1Q8TDS5 423 aa10.23□□□□□ -0.77
USP48-208ENST00000479177 CDK11AQ9UQ88 783 aaPredicted RBP10.23□□□□□ -0.77
USP48-208ENST00000479177 PHLDB1Q86UU1 1377 aa10.23□□□□□ -0.77
USP48-208ENST00000479177 THSD4Q6ZMP0 1018 aa10.22□□□□□ -0.77
USP48-208ENST00000479177 BCL2L12Q9HB09 334 aa10.22□□□□□ -0.77
USP48-208ENST00000479177 RRBP1Q9P2E9 1410 aaKnown RBP10.22□□□□□ -0.77
USP48-208ENST00000479177 ABCC10Q5T3U5 1492 aa10.22□□□□□ -0.77
USP48-208ENST00000479177 IFFO2Q5TF58 517 aa10.21□□□□□ -0.77
USP48-208ENST00000479177 KCNH8Q96L42 1107 aa10.21□□□□□ -0.77
USP48-208ENST00000479177 WDR7Q9Y4E6 1490 aa10.21□□□□□ -0.78
USP48-208ENST00000479177 TRIM26Q12899 539 aaPredicted RBP10.2□□□□□ -0.78
USP48-208ENST00000479177 CAMK2BQ13554 666 aa10.2□□□□□ -0.78
USP48-208ENST00000479177 MYOM3Q5VTT5 1437 aa10.2□□□□□ -0.78
USP48-208ENST00000479177 ITSN2Q9NZM3 1697 aa10.2□□□□□ -0.78
USP48-208ENST00000479177 TTC37Q6PGP7 1564 aa10.19□□□□□ -0.78
USP48-208ENST00000479177 MAPKBP1O60336 1514 aa10.19□□□□□ -0.78
USP48-208ENST00000479177 FGD6Q6ZV73 1430 aa10.19□□□□□ -0.78
USP48-208ENST00000479177 ASXL2Q76L83 1435 aa10.19□□□□□ -0.78
USP48-208ENST00000479177 PLEKHD1A6NEE1 506 aa10.19□□□□□ -0.78
USP48-208ENST00000479177 SLC4A5Q9BY07 1137 aa10.19□□□□□ -0.78
USP48-208ENST00000479177 IRX2Q9BZI1 471 aaPredicted RBP10.19□□□□□ -0.78
USP48-208ENST00000479177 WDR70Q9NW82 654 aa10.19□□□□□ -0.78
USP48-208ENST00000479177 CDC42BPAQ5VT25 1732 aa10.19□□□□□ -0.78
USP48-208ENST00000479177 A0A0G2JS52 829 aa10.18□□□□□ -0.78
USP48-208ENST00000479177 CYB5RLQ6IPT4 315 aa10.18□□□□□ -0.78
USP48-208ENST00000479177 PREX2Q70Z35 1606 aa10.18□□□□□ -0.78
USP48-208ENST00000479177 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.17□□□□□ -0.78
USP48-208ENST00000479177 CCNB3Q8WWL7 1395 aa10.17□□□□□ -0.78
USP48-208ENST00000479177 RGS20O76081 388 aa10.17□□□□□ -0.78
USP48-208ENST00000479177 FOSBP53539 338 aa10.17□□□□□ -0.78
USP48-208ENST00000479177 ZBED2Q9BTP6 218 aa10.17□□□□□ -0.78
USP48-208ENST00000479177 ABCA9Q8IUA7 1624 aa10.16□□□□□ -0.78
USP48-208ENST00000479177 PTPN23Q9H3S7 1636 aa10.16□□□□□ -0.78
USP48-208ENST00000479177 DPYSL4O14531 572 aa10.16□□□□□ -0.78
USP48-208ENST00000479177 E2F4Q16254 413 aa10.16□□□□□ -0.78
USP48-208ENST00000479177 WNT2BQ93097 391 aa10.16□□□□□ -0.78
USP48-208ENST00000479177 GPATCH8Q9UKJ3 1502 aaKnown RBP10.16□□□□□ -0.78
USP48-208ENST00000479177 TCOF1Q13428 1488 aaKnown RBP10.16□□□□□ -0.78
USP48-208ENST00000479177 MYO5CQ9NQX4 1742 aa10.16□□□□□ -0.78
USP48-208ENST00000479177 MIA2Q96PC5 1412 aa10.16□□□□□ -0.78
USP48-208ENST00000479177 PTPREP23469 700 aa10.14□□□□□ -0.79
USP48-208ENST00000479177 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.14□□□□□ -0.79
USP48-208ENST00000479177 CDC42BPBQ9Y5S2 1711 aa10.13□□□□□ -0.79
USP48-208ENST00000479177 KCNV2Q8TDN2 545 aa10.13□□□□□ -0.79
USP48-208ENST00000479177 ARAP3Q8WWN8 1544 aa10.12□□□□□ -0.79
USP48-208ENST00000479177 GOLGA8CPA6NN73 597 aa10.12□□□□□ -0.79
USP48-208ENST00000479177 MAP3K9P80192 1104 aa10.12□□□□□ -0.79
USP48-208ENST00000479177 MRPL50Q8N5N7 158 aaKnown RBP10.12□□□□□ -0.79
USP48-208ENST00000479177 PCGF6Q9BYE7 350 aa10.12□□□□□ -0.79
USP48-208ENST00000479177 ADAM33Q9BZ11 813 aa10.12□□□□□ -0.79
USP48-208ENST00000479177 CAMSAP2Q08AD1 1489 aa10.11□□□□□ -0.79
USP48-208ENST00000479177 ANO8Q9HCE9 1232 aaPredicted RBP10.11□□□□□ -0.79
USP48-208ENST00000479177 GLI2P10070 1586 aa10.1□□□□□ -0.79
USP48-208ENST00000479177 SAMD9LQ8IVG5 1584 aa10.1□□□□□ -0.79
USP48-208ENST00000479177 DIP2BQ9P265 1576 aa10.1□□□□□ -0.79
USP48-208ENST00000479177 EVI5O60447 810 aa10.1□□□□□ -0.79
USP48-208ENST00000479177 ARHGAP5Q13017 1502 aa10.1□□□□□ -0.79
USP48-208ENST00000479177 PLCH2O75038 1416 aa10.09□□□□□ -0.79
USP48-208ENST00000479177 DNMT1P26358 1616 aaKnown RBP10.09□□□□□ -0.79
USP48-208ENST00000479177 VSIG10Q8N0Z9 540 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms