RNA–Protein interactions for RNA: ENST00000478913.1

CCDC171-207, Transcript of coiled-coil domain containing 171, humanhuman

TSL 3

Gene CCDC171, Length 764 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC171-207ENST00000478913 RCCD1A6NED2 376 aa10.8□□□□□ -0.68
CCDC171-207ENST00000478913 IFFO2Q5TF58 517 aa10.8□□□□□ -0.68
CCDC171-207ENST00000478913 NBPF3Q9H094 633 aa10.8□□□□□ -0.68
CCDC171-207ENST00000478913 KDM4CQ9H3R0 1056 aa10.8□□□□□ -0.68
CCDC171-207ENST00000478913 SEPT9Q9UHD8 586 aaPredicted RBP10.8□□□□□ -0.68
CCDC171-207ENST00000478913 DNAJB2P25686 324 aa10.79□□□□□ -0.68
CCDC171-207ENST00000478913 GPCPD1Q9NPB8 672 aa10.79□□□□□ -0.68
CCDC171-207ENST00000478913 GIGYF2Q6Y7W6 1299 aaKnown RBP10.77□□□□□ -0.69
CCDC171-207ENST00000478913 FAM98CQ17RN3 349 aaKnown RBP10.76□□□□□ -0.69
CCDC171-207ENST00000478913 BHMG1C9JSJ3 638 aaPredicted RBP10.75□□□□□ -0.69
CCDC171-207ENST00000478913 MRPL50Q8N5N7 158 aaKnown RBP10.75□□□□□ -0.69
CCDC171-207ENST00000478913 STAC3Q96MF2 364 aa10.75□□□□□ -0.69
CCDC171-207ENST00000478913 REPIN1Q9BWE0 567 aaKnown RBP10.75□□□□□ -0.69
CCDC171-207ENST00000478913 TMEM134Q9H6X4 195 aa10.75□□□□□ -0.69
CCDC171-207ENST00000478913 LAPTM4BQ86VI4 370 aa10.74□□□□□ -0.69
CCDC171-207ENST00000478913 TMUB1Q9BVT8 246 aa10.74□□□□□ -0.69
CCDC171-207ENST00000478913 DAXXQ9UER7 740 aaPredicted RBP10.73□□□□□ -0.69
CCDC171-207ENST00000478913 HDGFP51858 240 aaKnown RBP10.71□□□□□ -0.69
CCDC171-207ENST00000478913 CECR2Q9BXF3 1484 aa10.71□□□□□ -0.69
CCDC171-207ENST00000478913 FAM217BQ9NTX9 383 aaPredicted RBP10.71□□□□□ -0.69
CCDC171-207ENST00000478913 LCE2BO14633 110 aa10.7□□□□□ -0.7
CCDC171-207ENST00000478913 MS4A1P11836 297 aa10.7□□□□□ -0.7
CCDC171-207ENST00000478913 SSTR3P32745 418 aaPredicted RBP10.7□□□□□ -0.7
CCDC171-207ENST00000478913 THSD4Q6ZMP0 1018 aa10.7□□□□□ -0.7
CCDC171-207ENST00000478913 GOLGA8CPA6NN73 597 aa10.69□□□□□ -0.7
CCDC171-207ENST00000478913 SWT1Q5T5J6 900 aaKnown RBP10.69□□□□□ -0.7
CCDC171-207ENST00000478913 SULF1Q8IWU6 871 aa10.69□□□□□ -0.7
CCDC171-207ENST00000478913 DDRGK1Q96HY6 314 aa10.69□□□□□ -0.7
CCDC171-207ENST00000478913 ZFRQ96KR1 1074 aaKnown RBP10.69□□□□□ -0.7
CCDC171-207ENST00000478913 DDX11L8A8MPP1 907 aa10.68□□□□□ -0.7
CCDC171-207ENST00000478913 SLC4A3P48751 1232 aa10.68□□□□□ -0.7
CCDC171-207ENST00000478913 SAMD7Q7Z3H4 446 aa10.68□□□□□ -0.7
CCDC171-207ENST00000478913 FAM117AQ9C073 453 aa10.68□□□□□ -0.7
CCDC171-207ENST00000478913 TMEM132AQ24JP5 1023 aa10.67□□□□□ -0.7
CCDC171-207ENST00000478913 IL27Q8NEV9 243 aa10.67□□□□□ -0.7
CCDC171-207ENST00000478913 RNF40O75150 1001 aa10.65□□□□□ -0.7
CCDC171-207ENST00000478913 RDH13Q8NBN7 331 aa10.65□□□□□ -0.7
CCDC171-207ENST00000478913 RSPH4AQ5TD94 716 aa10.64□□□□□ -0.71
CCDC171-207ENST00000478913 SLF2Q8IX21 1173 aa10.64□□□□□ -0.71
CCDC171-207ENST00000478913 ANKK1Q8NFD2 765 aa10.64□□□□□ -0.71
CCDC171-207ENST00000478913 LRCH3Q96II8 777 aa10.64□□□□□ -0.71
CCDC171-207ENST00000478913 BEGAINQ9BUH8 593 aa10.64□□□□□ -0.71
CCDC171-207ENST00000478913 CD46P15529 392 aa10.63□□□□□ -0.71
CCDC171-207ENST00000478913 Q6ZNB5 142 aa10.63□□□□□ -0.71
CCDC171-207ENST00000478913 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.62□□□□□ -0.71
CCDC171-207ENST00000478913 PLEKHG3A1L390 1219 aa10.61□□□□□ -0.71
CCDC171-207ENST00000478913 WNT2BQ93097 391 aa10.61□□□□□ -0.71
CCDC171-207ENST00000478913 CUX2O14529 1486 aa10.59□□□□□ -0.71
CCDC171-207ENST00000478913 SLC10A3P09131 477 aa10.58□□□□□ -0.72
CCDC171-207ENST00000478913 NECTIN2Q92692 538 aa10.58□□□□□ -0.72
CCDC171-207ENST00000478913 SOWAHBA6NEL2 793 aa10.57□□□□□ -0.72
CCDC171-207ENST00000478913 BCAMP50895 628 aa10.57□□□□□ -0.72
CCDC171-207ENST00000478913 NUTM1Q86Y26 1132 aa10.56□□□□□ -0.72
CCDC171-207ENST00000478913 CFHP08603 1231 aa10.55□□□□□ -0.72
CCDC171-207ENST00000478913 DIXDC1Q155Q3 683 aa10.55□□□□□ -0.72
CCDC171-207ENST00000478913 RSPH6AQ9H0K4 717 aa10.55□□□□□ -0.72
CCDC171-207ENST00000478913 HPS5Q9UPZ3 1129 aa10.55□□□□□ -0.72
CCDC171-207ENST00000478913 GCGRP47871 477 aa10.54□□□□□ -0.72
CCDC171-207ENST00000478913 TBC1D2Q9BYX2 928 aa10.54□□□□□ -0.72
CCDC171-207ENST00000478913 PPP4CP60510 307 aa10.53□□□□□ -0.72
CCDC171-207ENST00000478913 KMT5BQ4FZB7 885 aa10.53□□□□□ -0.72
CCDC171-207ENST00000478913 SPIRE2Q8WWL2 714 aa10.53□□□□□ -0.72
CCDC171-207ENST00000478913 TSR3Q9UJK0 312 aaKnown RBP10.53□□□□□ -0.72
CCDC171-207ENST00000478913 KDM4AO75164 1064 aa10.52□□□□□ -0.73
CCDC171-207ENST00000478913 ITGBL1O95965 494 aaPredicted RBP10.52□□□□□ -0.73
CCDC171-207ENST00000478913 SH3D19Q5HYK7 790 aa10.52□□□□□ -0.73
CCDC171-207ENST00000478913 MYSM1Q5VVJ2 828 aa10.51□□□□□ -0.73
CCDC171-207ENST00000478913 GOPCQ9HD26 462 aa10.51□□□□□ -0.73
CCDC171-207ENST00000478913 USP46P62068 366 aa10.5□□□□□ -0.73
CCDC171-207ENST00000478913 PRR14Q9BWN1 585 aa10.5□□□□□ -0.73
CCDC171-207ENST00000478913 SKIV2LQ15477 1246 aaKnown RBP10.49□□□□□ -0.73
CCDC171-207ENST00000478913 PCMTD1Q96MG8 357 aaPredicted RBP10.49□□□□□ -0.73
CCDC171-207ENST00000478913 ATP1B4Q9UN42 357 aaPredicted RBP10.49□□□□□ -0.73
CCDC171-207ENST00000478913 CLK2P49760 499 aaKnown RBP10.47□□□□□ -0.73
CCDC171-207ENST00000478913 FUT2Q10981 343 aa10.47□□□□□ -0.73
CCDC171-207ENST00000478913 GRIPAP1Q4V328 841 aa10.47□□□□□ -0.73
CCDC171-207ENST00000478913 POLR3EQ9NVU0 708 aa10.47□□□□□ -0.73
CCDC171-207ENST00000478913 WBP1LQ9NX94 342 aa10.47□□□□□ -0.73
CCDC171-207ENST00000478913 MOXD2PA6NHM9 499 aa10.46□□□□□ -0.73
CCDC171-207ENST00000478913 HOXA2O43364 376 aa10.46□□□□□ -0.73
CCDC171-207ENST00000478913 ACTN4O43707 911 aaKnown RBP10.45□□□□□ -0.74
CCDC171-207ENST00000478913 APLP1P51693 650 aa10.45□□□□□ -0.74
CCDC171-207ENST00000478913 RIC3Q7Z5B4 369 aa10.45□□□□□ -0.74
CCDC171-207ENST00000478913 NDUFV2P19404 249 aa10.44□□□□□ -0.74
CCDC171-207ENST00000478913 ATP6V1AP38606 617 aa10.44□□□□□ -0.74
CCDC171-207ENST00000478913 RSBN1LQ6PCB5 846 aaPredicted RBP10.44□□□□□ -0.74
CCDC171-207ENST00000478913 SPTLC1O15269 473 aa10.43□□□□□ -0.74
CCDC171-207ENST00000478913 LIMD1Q9UGP4 676 aa10.43□□□□□ -0.74
CCDC171-207ENST00000478913 FDX1P10109 184 aa10.42□□□□□ -0.74
CCDC171-207ENST00000478913 GJA5P36382 358 aa10.42□□□□□ -0.74
CCDC171-207ENST00000478913 TRAF7Q6Q0C0 670 aa10.42□□□□□ -0.74
CCDC171-207ENST00000478913 NYAP1Q6ZVC0 841 aa10.42□□□□□ -0.74
CCDC171-207ENST00000478913 PROCA1Q8NCQ7 364 aaPredicted RBP10.42□□□□□ -0.74
CCDC171-207ENST00000478913 GUCA2AQ02747 115 aa10.41□□□□□ -0.74
CCDC171-207ENST00000478913 PUS10Q3MIT2 529 aaKnown RBP10.41□□□□□ -0.74
CCDC171-207ENST00000478913 HLA-CQ95604 372 aa10.41□□□□□ -0.74
CCDC171-207ENST00000478913 PCDHB3Q9Y5E6 796 aa10.41□□□□□ -0.74
CCDC171-207ENST00000478913 CC2D2AQ9P2K1 1620 aa10.4□□□□□ -0.74
CCDC171-207ENST00000478913 CSPP1Q1MSJ5 1256 aa10.4□□□□□ -0.74
CCDC171-207ENST00000478913 GTF3C3Q9Y5Q9 886 aa10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms