RNA–Protein interactions for RNA: ENST00000477085.1

COL4A6-206, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best)

Gene COL4A6, Length 1,784 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-206ENST00000477085 RPGRIP1LQ68CZ1 1315 aa20.33■□□□□ 0.84
COL4A6-206ENST00000477085 MIER1Q8N108 512 aa20.32■□□□□ 0.84
COL4A6-206ENST00000477085 ST20-MTHFSA0A0A6YYL1 179 aa20.31■□□□□ 0.84
COL4A6-206ENST00000477085 PPLO60437 1756 aa20.31■□□□□ 0.84
COL4A6-206ENST00000477085 CFAP70Q5T0N1 1121 aa20.31■□□□□ 0.84
COL4A6-206ENST00000477085 NEXMIFQ5QGS0 1516 aa20.3■□□□□ 0.84
COL4A6-206ENST00000477085 LAMC1P11047 1609 aa20.3■□□□□ 0.84
COL4A6-206ENST00000477085 NUTM2DQ5VT03 806 aaPredicted RBP20.3■□□□□ 0.84
COL4A6-206ENST00000477085 CEBPAP49715 358 aaPredicted RBP20.29■□□□□ 0.84
COL4A6-206ENST00000477085 MYO5BQ9ULV0 1848 aa20.28■□□□□ 0.84
COL4A6-206ENST00000477085 CCDC7Q96M83 1385 aa20.28■□□□□ 0.84
COL4A6-206ENST00000477085 PIK3C2GO75747 1445 aa20.27■□□□□ 0.84
COL4A6-206ENST00000477085 KIF7Q2M1P5 1343 aa20.27■□□□□ 0.83
COL4A6-206ENST00000477085 KIAA1210Q9ULL0 1709 aa20.25■□□□□ 0.83
COL4A6-206ENST00000477085 TNRQ92752 1358 aa20.25■□□□□ 0.83
COL4A6-206ENST00000477085 A2ML1A8K2U0 1454 aa20.25■□□□□ 0.83
COL4A6-206ENST00000477085 VGFO15240 615 aaPredicted RBP20.23■□□□□ 0.83
COL4A6-206ENST00000477085 C14orf93Q9H972 538 aaKnown RBP20.23■□□□□ 0.83
COL4A6-206ENST00000477085 ZFYVE9O95405 1425 aa20.23■□□□□ 0.83
COL4A6-206ENST00000477085 FER1L4A9Z1Z3 1794 aa20.22■□□□□ 0.83
COL4A6-206ENST00000477085 C3P01024 1663 aa20.21■□□□□ 0.83
COL4A6-206ENST00000477085 TESK2Q96S53 571 aa20.21■□□□□ 0.83
COL4A6-206ENST00000477085 STAG3Q9UJ98 1225 aa20.21■□□□□ 0.83
COL4A6-206ENST00000477085 IQGAP1P46940 1657 aa20.2■□□□□ 0.82
COL4A6-206ENST00000477085 SCAF11Q99590 1463 aaKnown RBP20.2■□□□□ 0.82
COL4A6-206ENST00000477085 ADGRB1O14514 1584 aa20.18■□□□□ 0.82
COL4A6-206ENST00000477085 PLPPR3Q6T4P5 718 aa20.18■□□□□ 0.82
COL4A6-206ENST00000477085 POLR1AO95602 1720 aaPredicted RBP20.18■□□□□ 0.82
COL4A6-206ENST00000477085 TMEM132EQ6IEE7 984 aa20.17■□□□□ 0.82
COL4A6-206ENST00000477085 SENP3Q9H4L4 574 aaPredicted RBP20.17■□□□□ 0.82
COL4A6-206ENST00000477085 SETBP1Q9Y6X0 1596 aa20.16■□□□□ 0.82
COL4A6-206ENST00000477085 RIMS2Q9UQ26 1411 aa20.16■□□□□ 0.82
COL4A6-206ENST00000477085 ADAMTSL3P82987 1691 aa20.14■□□□□ 0.82
COL4A6-206ENST00000477085 DISP3Q9P2K9 1392 aa20.13■□□□□ 0.81
COL4A6-206ENST00000477085 UBR1Q8IWV7 1749 aa20.12■□□□□ 0.81
COL4A6-206ENST00000477085 NLRP1Q9C000 1473 aa20.12■□□□□ 0.81
COL4A6-206ENST00000477085 POLR3GLQ9BT43 218 aa20.11■□□□□ 0.81
COL4A6-206ENST00000477085 RIMS1Q86UR5 1692 aaKnown RBP20.11■□□□□ 0.81
COL4A6-206ENST00000477085 ASXL1Q8IXJ9 1541 aa20.1■□□□□ 0.81
COL4A6-206ENST00000477085 KDM5AP29375 1690 aaKnown RBP20.1■□□□□ 0.81
COL4A6-206ENST00000477085 TRAK1Q9UPV9 953 aa20.1■□□□□ 0.81
COL4A6-206ENST00000477085 TMEM2Q9UHN6 1383 aa20.09■□□□□ 0.81
COL4A6-206ENST00000477085 ALKQ9UM73 1620 aa20.08■□□□□ 0.8
COL4A6-206ENST00000477085 EIF3AQ14152 1382 aaKnown RBP20.07■□□□□ 0.8
COL4A6-206ENST00000477085 TMF1P82094 1093 aa20.06■□□□□ 0.8
COL4A6-206ENST00000477085 PTPRMP28827 1452 aa20.06■□□□□ 0.8
COL4A6-206ENST00000477085 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.06■□□□□ 0.8
COL4A6-206ENST00000477085 LTKP29376 864 aa20.05■□□□□ 0.8
COL4A6-206ENST00000477085 MYO3AQ8NEV4 1616 aa20.04■□□□□ 0.8
COL4A6-206ENST00000477085 NRXN3Q9Y4C0 1643 aa20.04■□□□□ 0.8
COL4A6-206ENST00000477085 ANP32CO43423 234 aa20.02■□□□□ 0.8
COL4A6-206ENST00000477085 CENPJQ9HC77 1338 aaPredicted RBP20.02■□□□□ 0.79
COL4A6-206ENST00000477085 STK26Q9P289 416 aa20.01■□□□□ 0.79
COL4A6-206ENST00000477085 SETD1AO15047 1707 aaKnown RBP20.01■□□□□ 0.79
COL4A6-206ENST00000477085 HDGFP51858 240 aaKnown RBP20■□□□□ 0.79
COL4A6-206ENST00000477085 ARHGAP23Q9P227 1491 aa20■□□□□ 0.79
COL4A6-206ENST00000477085 YTHDC2Q9H6S0 1430 aaKnown RBP19.99■□□□□ 0.79
COL4A6-206ENST00000477085 SLIT1O75093 1534 aa19.99■□□□□ 0.79
COL4A6-206ENST00000477085 SBNO2Q9Y2G9 1366 aa19.99■□□□□ 0.79
COL4A6-206ENST00000477085 TXNDC2Q86VQ3 553 aa19.98■□□□□ 0.79
COL4A6-206ENST00000477085 METP08581 1390 aa19.98■□□□□ 0.79
COL4A6-206ENST00000477085 ARHGEF28Q8N1W1 1705 aaKnown RBP19.98■□□□□ 0.79
COL4A6-206ENST00000477085 THEMISQ8N1K5 641 aaPredicted RBP19.98■□□□□ 0.79
COL4A6-206ENST00000477085 CEP170BQ9Y4F5 1589 aaPredicted RBP19.96■□□□□ 0.79
COL4A6-206ENST00000477085 ADAMTS13Q76LX8 1427 aa19.96■□□□□ 0.79
COL4A6-206ENST00000477085 QRICH2Q9H0J4 1663 aa19.95■□□□□ 0.78
COL4A6-206ENST00000477085 PLEKHG1Q9ULL1 1385 aa19.95■□□□□ 0.78
COL4A6-206ENST00000477085 PER1O15534 1290 aaPredicted RBP19.94■□□□□ 0.78
COL4A6-206ENST00000477085 PRKRIP1Q9H875 184 aaPredicted RBP19.94■□□□□ 0.78
COL4A6-206ENST00000477085 LRPPRCP42704 1394 aaKnown RBP19.93■□□□□ 0.78
COL4A6-206ENST00000477085 SLC24A1O60721 1099 aa19.93■□□□□ 0.78
COL4A6-206ENST00000477085 SAFB2Q14151 953 aaKnown RBP eCLIP19.93■□□□□ 0.78
COL4A6-206ENST00000477085 PRAM1Q96QH2 718 aa19.93■□□□□ 0.78
COL4A6-206ENST00000477085 EID1Q9Y6B2 187 aa19.93■□□□□ 0.78
COL4A6-206ENST00000477085 CDCA8Q53HL2 280 aa19.92■□□□□ 0.78
COL4A6-206ENST00000477085 PANK3Q9H999 370 aa19.92■□□□□ 0.78
COL4A6-206ENST00000477085 MED14O60244 1454 aa19.91■□□□□ 0.78
COL4A6-206ENST00000477085 CCER2I3L3R5 266 aa19.91■□□□□ 0.78
COL4A6-206ENST00000477085 BCANQ96GW7 911 aa19.91■□□□□ 0.78
COL4A6-206ENST00000477085 ABCC11Q96J66 1382 aa19.91■□□□□ 0.78
COL4A6-206ENST00000477085 WAPLQ7Z5K2 1190 aa19.89■□□□□ 0.77
COL4A6-206ENST00000477085 SLC26A8Q96RN1 970 aa19.89■□□□□ 0.77
COL4A6-206ENST00000477085 DLC1Q96QB1 1528 aa19.88■□□□□ 0.77
COL4A6-206ENST00000477085 TULP4Q9NRJ4 1543 aa19.88■□□□□ 0.77
COL4A6-206ENST00000477085 PLEKHH1Q9ULM0 1364 aa19.88■□□□□ 0.77
COL4A6-206ENST00000477085 MYOM1P52179 1685 aa19.88■□□□□ 0.77
COL4A6-206ENST00000477085 ZNF142P52746 1687 aaPredicted RBP19.88■□□□□ 0.77
COL4A6-206ENST00000477085 CNGB1Q14028 1251 aaPredicted RBP19.87■□□□□ 0.77
COL4A6-206ENST00000477085 YTHDC1Q96MU7 727 aaKnown RBP19.87■□□□□ 0.77
COL4A6-206ENST00000477085 POGKQ9P215 609 aa19.87■□□□□ 0.77
COL4A6-206ENST00000477085 CCDC184Q52MB2 194 aa19.86■□□□□ 0.77
COL4A6-206ENST00000477085 SETD1BQ9UPS6 1966 aaKnown RBP19.85■□□□□ 0.77
COL4A6-206ENST00000477085 MINK1Q8N4C8 1332 aaPredicted RBP19.85■□□□□ 0.77
COL4A6-206ENST00000477085 PTPRUQ92729 1446 aa19.85■□□□□ 0.77
COL4A6-206ENST00000477085 TECPR2O15040 1411 aa19.84■□□□□ 0.77
COL4A6-206ENST00000477085 KDM4FA0A1W2PPD8 638 aa19.84■□□□□ 0.77
COL4A6-206ENST00000477085 TBX22Q9Y458 520 aa19.84■□□□□ 0.77
COL4A6-206ENST00000477085 EVC2Q86UK5 1308 aa19.84■□□□□ 0.77
COL4A6-206ENST00000477085 CABP2Q9NPB3 220 aa19.83■□□□□ 0.77
COL4A6-206ENST00000477085 SIRT1Q96EB6 747 aa19.83■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms