RNA–Protein interactions for RNA: ENST00000473684.5

TMEM39A-206, Transcript of transmembrane protein 39A, humanhuman

TSL 5

Gene TMEM39A, Length 3,043 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-206ENST00000473684 ZSWIM6Q9HCJ5 1215 aa7.3□□□□□ -1.24
TMEM39A-206ENST00000473684 GPR153Q6NV75 609 aa7.29□□□□□ -1.24
TMEM39A-206ENST00000473684 CCER1Q8TC90 406 aaPredicted RBP7.29□□□□□ -1.24
TMEM39A-206ENST00000473684 RBM19Q9Y4C8 960 aaKnown RBP7.29□□□□□ -1.24
TMEM39A-206ENST00000473684 ABCC8Q09428 1581 aa7.29□□□□□ -1.24
TMEM39A-206ENST00000473684 NLRP7Q8WX94 980 aa7.29□□□□□ -1.24
TMEM39A-206ENST00000473684 BEGAINQ9BUH8 593 aa7.29□□□□□ -1.24
TMEM39A-206ENST00000473684 SKIV2LQ15477 1246 aaKnown RBP7.28□□□□□ -1.24
TMEM39A-206ENST00000473684 PRSS12P56730 875 aa7.28□□□□□ -1.24
TMEM39A-206ENST00000473684 FANCIQ9NVI1 1328 aa7.28□□□□□ -1.24
TMEM39A-206ENST00000473684 RIMBP2O15034 1052 aa7.27□□□□□ -1.25
TMEM39A-206ENST00000473684 POTEB2H3BUK9 544 aa7.27□□□□□ -1.25
TMEM39A-206ENST00000473684 CDCA7LQ96GN5 454 aa7.26□□□□□ -1.25
TMEM39A-206ENST00000473684 CCDC136Q96JN2 1154 aa7.26□□□□□ -1.25
TMEM39A-206ENST00000473684 LHX6Q9UPM6 363 aa7.25□□□□□ -1.25
TMEM39A-206ENST00000473684 TOP2AP11388 1531 aaKnown RBP7.25□□□□□ -1.25
TMEM39A-206ENST00000473684 RBM46Q8TBY0 533 aaKnown RBP7.24□□□□□ -1.25
TMEM39A-206ENST00000473684 FAM198AQ9UFP1 575 aa7.24□□□□□ -1.25
TMEM39A-206ENST00000473684 CFTRP13569 1480 aa7.24□□□□□ -1.25
TMEM39A-206ENST00000473684 COL9A1P20849 921 aa7.24□□□□□ -1.25
TMEM39A-206ENST00000473684 PROCA1Q8NCQ7 364 aaPredicted RBP7.24□□□□□ -1.25
TMEM39A-206ENST00000473684 MYSM1Q5VVJ2 828 aa7.23□□□□□ -1.25
TMEM39A-206ENST00000473684 PPP4R3BQ5MIZ7 849 aa7.22□□□□□ -1.25
TMEM39A-206ENST00000473684 ZNF710Q8N1W2 664 aa7.22□□□□□ -1.25
TMEM39A-206ENST00000473684 EYA1Q99502 592 aa7.22□□□□□ -1.25
TMEM39A-206ENST00000473684 C1orf115Q9H7X2 142 aa7.22□□□□□ -1.25
TMEM39A-206ENST00000473684 BCL2L12Q9HB09 334 aa7.22□□□□□ -1.25
TMEM39A-206ENST00000473684 POLR3EQ9NVU0 708 aa7.22□□□□□ -1.25
TMEM39A-206ENST00000473684 RIMBP3CA6NJZ7 1639 aa7.22□□□□□ -1.25
TMEM39A-206ENST00000473684 RIMBP3BA6NNM3 1639 aa7.22□□□□□ -1.25
TMEM39A-206ENST00000473684 RIMBP3Q9UFD9 1639 aa7.22□□□□□ -1.25
TMEM39A-206ENST00000473684 ERCC6Q03468 1493 aa7.22□□□□□ -1.25
TMEM39A-206ENST00000473684 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP7.22□□□□□ -1.25
TMEM39A-206ENST00000473684 MCM6Q14566 821 aa7.22□□□□□ -1.25
TMEM39A-206ENST00000473684 NESP48681 1621 aa7.22□□□□□ -1.25
TMEM39A-206ENST00000473684 TARBP1Q13395 1621 aaKnown RBP7.22□□□□□ -1.25
TMEM39A-206ENST00000473684 PSDA5PKW4 1024 aaPredicted RBP7.22□□□□□ -1.25
TMEM39A-206ENST00000473684 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.22□□□□□ -1.25
TMEM39A-206ENST00000473684 A6NJR5 290 aa7.21□□□□□ -1.25
TMEM39A-206ENST00000473684 SCUBE2Q9NQ36 999 aa7.21□□□□□ -1.25
TMEM39A-206ENST00000473684 TBC1D2Q9BYX2 928 aa7.21□□□□□ -1.26
TMEM39A-206ENST00000473684 TSKSQ9UJT2 592 aa7.21□□□□□ -1.26
TMEM39A-206ENST00000473684 RCCD1A6NED2 376 aa7.2□□□□□ -1.26
TMEM39A-206ENST00000473684 NEFLP07196 543 aa7.2□□□□□ -1.26
TMEM39A-206ENST00000473684 CLASP1Q7Z460 1538 aa7.2□□□□□ -1.26
TMEM39A-206ENST00000473684 RSF1Q96T23 1441 aaPredicted RBP7.2□□□□□ -1.26
TMEM39A-206ENST00000473684 MAMSTRQ6ZN01 415 aa7.2□□□□□ -1.26
TMEM39A-206ENST00000473684 CLUAP1Q96AJ1 413 aa7.2□□□□□ -1.26
TMEM39A-206ENST00000473684 PPP1R3GB7ZBB8 358 aa7.19□□□□□ -1.26
TMEM39A-206ENST00000473684 CLK2P49760 499 aaKnown RBP7.19□□□□□ -1.26
TMEM39A-206ENST00000473684 C3orf80F5H4A9 247 aa7.19□□□□□ -1.26
TMEM39A-206ENST00000473684 PTPREP23469 700 aa7.19□□□□□ -1.26
TMEM39A-206ENST00000473684 DIXDC1Q155Q3 683 aa7.19□□□□□ -1.26
TMEM39A-206ENST00000473684 GLIPR1L2Q4G1C9 344 aa7.19□□□□□ -1.26
TMEM39A-206ENST00000473684 UBTFP17480 764 aaKnown RBP7.18□□□□□ -1.26
TMEM39A-206ENST00000473684 DNMBPQ6XZF7 1577 aa7.18□□□□□ -1.26
TMEM39A-206ENST00000473684 CADPSQ9ULU8 1353 aa7.18□□□□□ -1.26
TMEM39A-206ENST00000473684 IFT140Q96RY7 1462 aa7.17□□□□□ -1.26
TMEM39A-206ENST00000473684 ARID3CA6NKF2 412 aa7.17□□□□□ -1.26
TMEM39A-206ENST00000473684 CD46P15529 392 aa7.17□□□□□ -1.26
TMEM39A-206ENST00000473684 NUDT18Q6ZVK8 323 aa7.17□□□□□ -1.26
TMEM39A-206ENST00000473684 SHROOM2Q13796 1616 aa7.17□□□□□ -1.26
TMEM39A-206ENST00000473684 TRAK2O60296 914 aa7.17□□□□□ -1.26
TMEM39A-206ENST00000473684 ATP1B4Q9UN42 357 aaPredicted RBP7.17□□□□□ -1.26
TMEM39A-206ENST00000473684 CHD1O14646 1710 aa7.17□□□□□ -1.26
TMEM39A-206ENST00000473684 CEP164Q9UPV0 1460 aa7.17□□□□□ -1.26
TMEM39A-206ENST00000473684 TRIM6-TRIM34B2RNG4 842 aa7.17□□□□□ -1.26
TMEM39A-206ENST00000473684 APBB1O00213 710 aa7.17□□□□□ -1.26
TMEM39A-206ENST00000473684 SPIRE2Q8WWL2 714 aa7.17□□□□□ -1.26
TMEM39A-206ENST00000473684 HOXB1P14653 301 aaPredicted RBP7.16□□□□□ -1.26
TMEM39A-206ENST00000473684 FBXO31Q5XUX0 539 aaPredicted RBP7.16□□□□□ -1.26
TMEM39A-206ENST00000473684 LIMD1Q9UGP4 676 aa7.16□□□□□ -1.26
TMEM39A-206ENST00000473684 NBPF26B4DH59 902 aa7.16□□□□□ -1.26
TMEM39A-206ENST00000473684 DNAJB2P25686 324 aa7.16□□□□□ -1.26
TMEM39A-206ENST00000473684 TATDN2Q93075 761 aa7.16□□□□□ -1.26
TMEM39A-206ENST00000473684 RIC3Q7Z5B4 369 aa7.15□□□□□ -1.27
TMEM39A-206ENST00000473684 SULF1Q8IWU6 871 aa7.15□□□□□ -1.27
TMEM39A-206ENST00000473684 TMEM134Q9H6X4 195 aa7.15□□□□□ -1.27
TMEM39A-206ENST00000473684 PNMA3Q9UL41 463 aa7.15□□□□□ -1.27
TMEM39A-206ENST00000473684 RFC5P40937 340 aa7.14□□□□□ -1.27
TMEM39A-206ENST00000473684 TUSC1Q2TAM9 212 aa7.14□□□□□ -1.27
TMEM39A-206ENST00000473684 PPP2R2DQ66LE6 453 aa7.14□□□□□ -1.27
TMEM39A-206ENST00000473684 PACS2Q86VP3 889 aa7.14□□□□□ -1.27
TMEM39A-206ENST00000473684 SNPHO15079 494 aa7.14□□□□□ -1.27
TMEM39A-206ENST00000473684 BANK1Q8NDB2 785 aa7.14□□□□□ -1.27
TMEM39A-206ENST00000473684 ARID3AQ99856 593 aa7.14□□□□□ -1.27
TMEM39A-206ENST00000473684 MROH2BQ7Z745 1585 aa7.14□□□□□ -1.27
TMEM39A-206ENST00000473684 SPDYE5A6NIY4 337 aa7.14□□□□□ -1.27
TMEM39A-206ENST00000473684 DDX11L8A8MPP1 907 aa7.13□□□□□ -1.27
TMEM39A-206ENST00000473684 SPTLC1O15269 473 aa7.13□□□□□ -1.27
TMEM39A-206ENST00000473684 POM121Q96HA1 1249 aa7.13□□□□□ -1.27
TMEM39A-206ENST00000473684 FNBP4Q8N3X1 1017 aaPredicted RBP7.13□□□□□ -1.27
TMEM39A-206ENST00000473684 EIF4G3O43432 1585 aaKnown RBP7.12□□□□□ -1.27
TMEM39A-206ENST00000473684 PROSER2Q86WR7 435 aaPredicted RBP7.12□□□□□ -1.27
TMEM39A-206ENST00000473684 PROX2Q3B8N5 592 aa7.12□□□□□ -1.27
TMEM39A-206ENST00000473684 RSBN1LQ6PCB5 846 aaPredicted RBP7.12□□□□□ -1.27
TMEM39A-206ENST00000473684 PBRM1Q86U86 1689 aa7.12□□□□□ -1.27
TMEM39A-206ENST00000473684 TMEM259Q4ZIN3 620 aa7.11□□□□□ -1.27
TMEM39A-206ENST00000473684 SNRKQ9NRH2 765 aa7.11□□□□□ -1.27
TMEM39A-206ENST00000473684 NUTM1Q86Y26 1132 aa7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms