RNA–Protein interactions for RNA: ENST00000472585.1

VCL-204, Transcript of vinculin, humanhuman

TSL 2

Gene VCL, Length 556 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-204ENST00000472585 UPF1Q92900 1129 aaKnown RBP eCLIP14.72□□□□□ -0.05
VCL-204ENST00000472585 ERBINQ96RT1 1412 aa14.72□□□□□ -0.05
VCL-204ENST00000472585 PIK3C2BO00750 1634 aa14.71□□□□□ -0.05
VCL-204ENST00000472585 MSH6P52701 1360 aa14.71□□□□□ -0.06
VCL-204ENST00000472585 DAPK1P53355 1430 aa14.7□□□□□ -0.06
VCL-204ENST00000472585 ZNF772Q68DY9 489 aaPredicted RBP14.7□□□□□ -0.06
VCL-204ENST00000472585 TRIM52Q96A61 297 aa14.7□□□□□ -0.06
VCL-204ENST00000472585 BCANQ96GW7 911 aa14.7□□□□□ -0.06
VCL-204ENST00000472585 SLAIN2Q9P270 581 aa14.7□□□□□ -0.06
VCL-204ENST00000472585 TET3O43151 1660 aa14.7□□□□□ -0.06
VCL-204ENST00000472585 NOS1P29475 1434 aa14.67□□□□□ -0.06
VCL-204ENST00000472585 EFCAB6Q5THR3 1501 aa14.67□□□□□ -0.06
VCL-204ENST00000472585 NKTRP30414 1462 aaKnown RBP14.67□□□□□ -0.06
VCL-204ENST00000472585 LMTK2Q8IWU2 1503 aa14.66□□□□□ -0.06
VCL-204ENST00000472585 KDM5AP29375 1690 aaKnown RBP14.66□□□□□ -0.06
VCL-204ENST00000472585 PTPN23Q9H3S7 1636 aa14.66□□□□□ -0.06
VCL-204ENST00000472585 FGD6Q6ZV73 1430 aa14.66□□□□□ -0.06
VCL-204ENST00000472585 SPATA31A6Q5VVP1 1343 aa14.66□□□□□ -0.06
VCL-204ENST00000472585 KANK1Q14678 1352 aa14.64□□□□□ -0.07
VCL-204ENST00000472585 RXRBP28702 533 aa14.64□□□□□ -0.07
VCL-204ENST00000472585 ANKRD30AQ9BXX3 1397 aa14.63□□□□□ -0.07
VCL-204ENST00000472585 CROCC2H7BZ55 1655 aa14.63□□□□□ -0.07
VCL-204ENST00000472585 NWD1Q149M9 1564 aa14.63□□□□□ -0.07
VCL-204ENST00000472585 COL16A1Q07092 1604 aaPredicted RBP14.63□□□□□ -0.07
VCL-204ENST00000472585 C14orf37Q86TY3 774 aa14.62□□□□□ -0.07
VCL-204ENST00000472585 SLC52A1Q9NWF4 448 aa14.62□□□□□ -0.07
VCL-204ENST00000472585 LRP6O75581 1613 aa14.61□□□□□ -0.07
VCL-204ENST00000472585 ZFYVE9O95405 1425 aa14.6□□□□□ -0.07
VCL-204ENST00000472585 CHD2O14647 1828 aaKnown RBP14.59□□□□□ -0.07
VCL-204ENST00000472585 SHPRHQ149N8 1683 aa14.58□□□□□ -0.07
VCL-204ENST00000472585 ADGRB3O60242 1522 aa14.58□□□□□ -0.08
VCL-204ENST00000472585 NUTM2BA6NNL0 878 aaPredicted RBP14.57□□□□□ -0.08
VCL-204ENST00000472585 NUTM2EB1AL46 878 aaPredicted RBP14.57□□□□□ -0.08
VCL-204ENST00000472585 PPP1R15AO75807 674 aaPredicted RBP14.57□□□□□ -0.08
VCL-204ENST00000472585 HDGFP51858 240 aaKnown RBP14.57□□□□□ -0.08
VCL-204ENST00000472585 APLP2Q06481 763 aa14.57□□□□□ -0.08
VCL-204ENST00000472585 NUTM2DQ5VT03 806 aaPredicted RBP14.57□□□□□ -0.08
VCL-204ENST00000472585 NUTM2AQ8IVF1 878 aaPredicted RBP14.57□□□□□ -0.08
VCL-204ENST00000472585 PLEKHG1Q9ULL1 1385 aa14.57□□□□□ -0.08
VCL-204ENST00000472585 ADGRL2O95490 1459 aa14.57□□□□□ -0.08
VCL-204ENST00000472585 ATF3P18847 181 aa14.56□□□□□ -0.08
VCL-204ENST00000472585 TBX22Q9Y458 520 aa14.56□□□□□ -0.08
VCL-204ENST00000472585 RIMS2Q9UQ26 1411 aa14.56□□□□□ -0.08
VCL-204ENST00000472585 CDK12Q9NYV4 1490 aaPredicted RBP14.56□□□□□ -0.08
VCL-204ENST00000472585 FAM50AQ14320 339 aaKnown RBP14.55□□□□□ -0.08
VCL-204ENST00000472585 CADPS2Q86UW7 1296 aa14.55□□□□□ -0.08
VCL-204ENST00000472585 ANKRD50Q9ULJ7 1429 aa14.55□□□□□ -0.08
VCL-204ENST00000472585 AHDC1Q5TGY3 1603 aaPredicted RBP14.55□□□□□ -0.08
VCL-204ENST00000472585 NCOA3Q9Y6Q9 1424 aa14.54□□□□□ -0.08
VCL-204ENST00000472585 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.53□□□□□ -0.08
VCL-204ENST00000472585 ADAMTS13Q76LX8 1427 aa14.53□□□□□ -0.08
VCL-204ENST00000472585 SRCAPQ6ZRS2 3230 aa14.53□□□□□ -0.08
VCL-204ENST00000472585 MYO5BQ9ULV0 1848 aa14.52□□□□□ -0.08
VCL-204ENST00000472585 AFF2P51816 1311 aa14.52□□□□□ -0.08
VCL-204ENST00000472585 C19orf44Q9H6X5 657 aa14.52□□□□□ -0.09
VCL-204ENST00000472585 RPRD2Q5VT52 1461 aaKnown RBP14.51□□□□□ -0.09
VCL-204ENST00000472585 CHGAP10645 457 aaKnown RBP14.51□□□□□ -0.09
VCL-204ENST00000472585 TMEM131LA2VDJ0 1609 aa14.51□□□□□ -0.09
VCL-204ENST00000472585 PTPRUQ92729 1446 aa14.49□□□□□ -0.09
VCL-204ENST00000472585 GCC2Q8IWJ2 1684 aa14.49□□□□□ -0.09
VCL-204ENST00000472585 RBM6P78332 1123 aaKnown RBP14.48□□□□□ -0.09
VCL-204ENST00000472585 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.48□□□□□ -0.09
VCL-204ENST00000472585 QTRT2Q9H974 415 aaKnown RBP14.48□□□□□ -0.09
VCL-204ENST00000472585 AMOTL2Q9Y2J4 779 aa14.48□□□□□ -0.09
VCL-204ENST00000472585 BRINP3Q76B58 766 aa14.47□□□□□ -0.09
VCL-204ENST00000472585 C8orf37Q96NL8 207 aa14.47□□□□□ -0.09
VCL-204ENST00000472585 DIP2AQ14689 1571 aa14.47□□□□□ -0.09
VCL-204ENST00000472585 RGS12O14924 1447 aa14.46□□□□□ -0.09
VCL-204ENST00000472585 LRRC59Q96AG4 307 aaKnown RBP14.45□□□□□ -0.1
VCL-204ENST00000472585 NGLY1Q96IV0 654 aa14.45□□□□□ -0.1
VCL-204ENST00000472585 ZRANB1Q9UGI0 708 aa14.45□□□□□ -0.1
VCL-204ENST00000472585 PIK3R4Q99570 1358 aa14.44□□□□□ -0.1
VCL-204ENST00000472585 ATAD2Q6PL18 1390 aa14.43□□□□□ -0.1
VCL-204ENST00000472585 E9PCH4 1651 aa14.42□□□□□ -0.1
VCL-204ENST00000472585 SETD5Q9C0A6 1442 aa14.42□□□□□ -0.1
VCL-204ENST00000472585 UNC13BO14795 1591 aa14.42□□□□□ -0.1
VCL-204ENST00000472585 ASXL1Q8IXJ9 1541 aa14.41□□□□□ -0.1
VCL-204ENST00000472585 DDX17Q92841 729 aaKnown RBP14.41□□□□□ -0.1
VCL-204ENST00000472585 NUP155O75694 1391 aa14.41□□□□□ -0.1
VCL-204ENST00000472585 NHSL1Q5SYE7 1610 aa14.41□□□□□ -0.1
VCL-204ENST00000472585 TRPM2O94759 1503 aa14.41□□□□□ -0.1
VCL-204ENST00000472585 DCCP43146 1447 aa14.41□□□□□ -0.1
VCL-204ENST00000472585 METP08581 1390 aa14.4□□□□□ -0.1
VCL-204ENST00000472585 ROCK1Q13464 1354 aa14.4□□□□□ -0.1
VCL-204ENST00000472585 ADAMTS2O95450 1211 aa14.38□□□□□ -0.11
VCL-204ENST00000472585 ITGAEP38570 1179 aa14.38□□□□□ -0.11
VCL-204ENST00000472585 SLC4A1APQ9BWU0 796 aaKnown RBP14.38□□□□□ -0.11
VCL-204ENST00000472585 PNPLA6Q8IY17 1366 aa14.37□□□□□ -0.11
VCL-204ENST00000472585 MST1RQ04912 1400 aa14.37□□□□□ -0.11
VCL-204ENST00000472585 NRXN3Q9Y4C0 1643 aa14.37□□□□□ -0.11
VCL-204ENST00000472585 PPARGC1BQ86YN6 1023 aaKnown RBP14.36□□□□□ -0.11
VCL-204ENST00000472585 IQGAP3Q86VI3 1631 aa14.36□□□□□ -0.11
VCL-204ENST00000472585 USP21Q9UK80 565 aa14.35□□□□□ -0.11
VCL-204ENST00000472585 TRPC5Q9UL62 973 aaPredicted RBP14.35□□□□□ -0.11
VCL-204ENST00000472585 CCDC125Q86Z20 511 aa14.34□□□□□ -0.11
VCL-204ENST00000472585 SETBP1Q9Y6X0 1596 aa14.33□□□□□ -0.12
VCL-204ENST00000472585 XRN1Q8IZH2 1706 aaKnown RBP14.32□□□□□ -0.12
VCL-204ENST00000472585 ZNF326Q5BKZ1 582 aaKnown RBP14.32□□□□□ -0.12
VCL-204ENST00000472585 EP400Q96L91 3159 aa14.31□□□□□ -0.12
VCL-204ENST00000472585 ORAI2Q96SN7 254 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms