RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 PIP4K2AP48426 406 aaPredicted RBP16.1■□□□□ 0.17
COL6A3-209ENST00000472056 TAF7LQ5H9L4 462 aa16.1■□□□□ 0.17
COL6A3-209ENST00000472056 TOP2AP11388 1531 aaKnown RBP16.1■□□□□ 0.17
COL6A3-209ENST00000472056 IFT57Q9NWB7 429 aa16.1■□□□□ 0.17
COL6A3-209ENST00000472056 IQCEQ6IPM2 695 aa16.1■□□□□ 0.17
COL6A3-209ENST00000472056 CUX2O14529 1486 aa16.1■□□□□ 0.17
COL6A3-209ENST00000472056 LUC7LQ9NQ29 371 aaKnown RBP16.1■□□□□ 0.17
COL6A3-209ENST00000472056 ZNF592Q92610 1267 aa16.09■□□□□ 0.17
COL6A3-209ENST00000472056 MPHOSPH9Q99550 1183 aa16.09■□□□□ 0.17
COL6A3-209ENST00000472056 CCDC73Q6ZRK6 1079 aa16.09■□□□□ 0.17
COL6A3-209ENST00000472056 KCNH8Q96L42 1107 aa16.08■□□□□ 0.16
COL6A3-209ENST00000472056 AMOTL1Q8IY63 956 aa16.08■□□□□ 0.16
COL6A3-209ENST00000472056 NUP155O75694 1391 aa16.07■□□□□ 0.16
COL6A3-209ENST00000472056 CCDC144AA2RUR9 1427 aa16.07■□□□□ 0.16
COL6A3-209ENST00000472056 OLFM4Q6UX06 510 aa16.07■□□□□ 0.16
COL6A3-209ENST00000472056 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.07■□□□□ 0.16
COL6A3-209ENST00000472056 HSP90AB4PQ58FF6 505 aa16.07■□□□□ 0.16
COL6A3-209ENST00000472056 GOLGA6L10A6NI86 522 aa16.06■□□□□ 0.16
COL6A3-209ENST00000472056 DEF6Q9H4E7 631 aa16.06■□□□□ 0.16
COL6A3-209ENST00000472056 SMARCE1Q969G3 411 aa16.06■□□□□ 0.16
COL6A3-209ENST00000472056 KIAA0754O94854 1291 aa16.06■□□□□ 0.16
COL6A3-209ENST00000472056 ERLIN2O94905 339 aa16.06■□□□□ 0.16
COL6A3-209ENST00000472056 RABEP1Q15276 862 aa16.06■□□□□ 0.16
COL6A3-209ENST00000472056 KIF2AO00139 706 aaPredicted RBP16.06■□□□□ 0.16
COL6A3-209ENST00000472056 PKD2Q13563 968 aa16.06■□□□□ 0.16
COL6A3-209ENST00000472056 FAM107BQ9H098 131 aa16.06■□□□□ 0.16
COL6A3-209ENST00000472056 PRDM2Q13029 1718 aa16.05■□□□□ 0.16
COL6A3-209ENST00000472056 CNTLNQ9NXG0 1405 aa16.05■□□□□ 0.16
COL6A3-209ENST00000472056 MARCH6O60337 910 aa16.05■□□□□ 0.16
COL6A3-209ENST00000472056 SAFBQ15424 915 aaKnown RBP eCLIP16.05■□□□□ 0.16
COL6A3-209ENST00000472056 APBB1O00213 710 aa16.04■□□□□ 0.16
COL6A3-209ENST00000472056 PLPPR3Q6T4P5 718 aa16.04■□□□□ 0.16
COL6A3-209ENST00000472056 ERLIN1O75477 346 aa16.04■□□□□ 0.16
COL6A3-209ENST00000472056 CREBRFQ8IUR6 639 aa16.04■□□□□ 0.16
COL6A3-209ENST00000472056 MIA2Q96PC5 1412 aa16.03■□□□□ 0.16
COL6A3-209ENST00000472056 BICD2Q8TD16 824 aa16.03■□□□□ 0.16
COL6A3-209ENST00000472056 PSMA5P28066 241 aa16.03■□□□□ 0.16
COL6A3-209ENST00000472056 TRDNQ13061 729 aa16.03■□□□□ 0.16
COL6A3-209ENST00000472056 ERC2O15083 957 aa16.03■□□□□ 0.16
COL6A3-209ENST00000472056 CWC22Q9HCG8 908 aaKnown RBP16.03■□□□□ 0.16
COL6A3-209ENST00000472056 IL27Q8NEV9 243 aa16.03■□□□□ 0.16
COL6A3-209ENST00000472056 CPLX1O14810 134 aa16.02■□□□□ 0.16
COL6A3-209ENST00000472056 ANKRD45Q5TZF3 282 aa16.02■□□□□ 0.16
COL6A3-209ENST00000472056 ERCC6Q03468 1493 aa16.02■□□□□ 0.15
COL6A3-209ENST00000472056 ANKRD18AQ8IVF6 992 aa16.02■□□□□ 0.15
COL6A3-209ENST00000472056 SMC3Q9UQE7 1217 aa16.01■□□□□ 0.15
COL6A3-209ENST00000472056 API5Q9BZZ5 524 aaKnown RBP16.01■□□□□ 0.15
COL6A3-209ENST00000472056 XBP1P17861 261 aa16.01■□□□□ 0.15
COL6A3-209ENST00000472056 PDE4CQ08493 712 aa16.01■□□□□ 0.15
COL6A3-209ENST00000472056 BRMS1Q9HCU9 246 aa16.01■□□□□ 0.15
COL6A3-209ENST00000472056 NFKBIBQ15653 356 aa16■□□□□ 0.15
COL6A3-209ENST00000472056 HIP1O00291 1037 aa16■□□□□ 0.15
COL6A3-209ENST00000472056 PCMTD1Q96MG8 357 aaPredicted RBP15.99■□□□□ 0.15
COL6A3-209ENST00000472056 USP47Q96K76 1375 aa15.99■□□□□ 0.15
COL6A3-209ENST00000472056 MCTP1Q6DN14 999 aa15.99■□□□□ 0.15
COL6A3-209ENST00000472056 MCM3P25205 808 aa15.99■□□□□ 0.15
COL6A3-209ENST00000472056 C22orf23Q9BZE7 217 aa15.99■□□□□ 0.15
COL6A3-209ENST00000472056 ABCC8Q09428 1581 aa15.99■□□□□ 0.15
COL6A3-209ENST00000472056 LMOD2Q6P5Q4 547 aa15.99■□□□□ 0.15
COL6A3-209ENST00000472056 TCEAL9Q9UHQ7 104 aa15.99■□□□□ 0.15
COL6A3-209ENST00000472056 DHX16O60231 1041 aaKnown RBP15.98■□□□□ 0.15
COL6A3-209ENST00000472056 BRD4O60885 1362 aaPredicted RBP15.98■□□□□ 0.15
COL6A3-209ENST00000472056 KINO60870 393 aaKnown RBP15.98■□□□□ 0.15
COL6A3-209ENST00000472056 PRKRIP1Q9H875 184 aaPredicted RBP15.98■□□□□ 0.15
COL6A3-209ENST00000472056 ODF2Q5BJF6 829 aa15.98■□□□□ 0.15
COL6A3-209ENST00000472056 CIZ1Q9ULV3 898 aaPredicted RBP15.97■□□□□ 0.15
COL6A3-209ENST00000472056 JMYQ8N9B5 988 aa15.97■□□□□ 0.15
COL6A3-209ENST00000472056 FILIP1LQ4L180 1135 aa15.97■□□□□ 0.15
COL6A3-209ENST00000472056 CHMP3Q9Y3E7 222 aa15.97■□□□□ 0.15
COL6A3-209ENST00000472056 EPS15P42566 896 aa15.97■□□□□ 0.15
COL6A3-209ENST00000472056 WIZO95785 1651 aa15.96■□□□□ 0.15
COL6A3-209ENST00000472056 DYDC1Q8WWB3 177 aa15.96■□□□□ 0.15
COL6A3-209ENST00000472056 PLEKHH2Q8IVE3 1493 aa15.96■□□□□ 0.15
COL6A3-209ENST00000472056 ERICH2A1L162 156 aa15.96■□□□□ 0.15
COL6A3-209ENST00000472056 RILPL2Q969X0 211 aa15.96■□□□□ 0.14
COL6A3-209ENST00000472056 TSPY26PQ9H489 355 aa15.96■□□□□ 0.14
COL6A3-209ENST00000472056 WASHC2AQ641Q2 1341 aa15.96■□□□□ 0.14
COL6A3-209ENST00000472056 WASHC2CQ9Y4E1 1318 aa15.96■□□□□ 0.14
COL6A3-209ENST00000472056 KIF21BO75037 1637 aa15.95■□□□□ 0.14
COL6A3-209ENST00000472056 CT47A1Q5JQC4 288 aaPredicted RBP15.95■□□□□ 0.14
COL6A3-209ENST00000472056 NOL10Q9BSC4 688 aaKnown RBP15.95■□□□□ 0.14
COL6A3-209ENST00000472056 DACH1Q9UI36 760 aa15.95■□□□□ 0.14
COL6A3-209ENST00000472056 CCDC7Q96M83 1385 aa15.95■□□□□ 0.14
COL6A3-209ENST00000472056 RAPGEF2Q9Y4G8 1499 aa15.95■□□□□ 0.14
COL6A3-209ENST00000472056 CCDC192P0DO97 292 aa15.95■□□□□ 0.14
COL6A3-209ENST00000472056 DZIP1LQ8IYY4 767 aaKnown RBP15.95■□□□□ 0.14
COL6A3-209ENST00000472056 DDX11Q96FC9 970 aa15.94■□□□□ 0.14
COL6A3-209ENST00000472056 SUPT6HQ7KZ85 1726 aaKnown RBP15.94■□□□□ 0.14
COL6A3-209ENST00000472056 EVC2Q86UK5 1308 aa15.94■□□□□ 0.14
COL6A3-209ENST00000472056 TRAK2O60296 914 aa15.94■□□□□ 0.14
COL6A3-209ENST00000472056 CT47B1P0C2W7 299 aaPredicted RBP15.94■□□□□ 0.14
COL6A3-209ENST00000472056 GBP3Q9H0R5 595 aa15.93■□□□□ 0.14
COL6A3-209ENST00000472056 SLC4A10Q6U841 1118 aa15.93■□□□□ 0.14
COL6A3-209ENST00000472056 DDX58O95786 925 aaKnown RBP15.93■□□□□ 0.14
COL6A3-209ENST00000472056 NEFHP12036 1026 aa15.93■□□□□ 0.14
COL6A3-209ENST00000472056 ANKRD1Q15327 319 aa15.93■□□□□ 0.14
COL6A3-209ENST00000472056 ZNHIT6Q9NWK9 470 aaKnown RBP15.92■□□□□ 0.14
COL6A3-209ENST00000472056 KRI1Q8N9T8 703 aaKnown RBP15.92■□□□□ 0.14
COL6A3-209ENST00000472056 ZNF396Q96N95 335 aaPredicted RBP15.92■□□□□ 0.14
COL6A3-209ENST00000472056 CDC45O75419 566 aa15.92■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms