RNA–Protein interactions for RNA: ENST00000471702.2

NPHP3-ACAD11-201, Transcript of NPHP3-ACAD11 readthrough (NMD candidate), humanhuman

TSL 2 BASIC

Gene NPHP3-ACAD11, Length 7,784 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11-201ENST00000471702 HOMER1Q86YM7 354 aa16.16■□□□□ 0.18
NPHP3-ACAD11-201ENST00000471702 WRNQ14191 1432 aaPredicted RBP eCLIP16.16■□□□□ 0.18
NPHP3-ACAD11-201ENST00000471702 ERICH2A1L162 156 aa16.16■□□□□ 0.18
NPHP3-ACAD11-201ENST00000471702 ANO2Q9NQ90 1003 aa16.16■□□□□ 0.18
NPHP3-ACAD11-201ENST00000471702 ZNF428Q96B54 188 aa16.16■□□□□ 0.18
NPHP3-ACAD11-201ENST00000471702 IBSPP21815 317 aaPredicted RBP16.16■□□□□ 0.18
NPHP3-ACAD11-201ENST00000471702 EPS15P42566 896 aa16.16■□□□□ 0.18
NPHP3-ACAD11-201ENST00000471702 AIMP1Q12904 312 aaKnown RBP16.15■□□□□ 0.18
NPHP3-ACAD11-201ENST00000471702 CCDC47Q96A33 483 aaKnown RBP16.15■□□□□ 0.18
NPHP3-ACAD11-201ENST00000471702 COG3Q96JB2 828 aa16.15■□□□□ 0.18
NPHP3-ACAD11-201ENST00000471702 EIF3AQ14152 1382 aaKnown RBP16.15■□□□□ 0.18
NPHP3-ACAD11-201ENST00000471702 SEPT11Q9NVA2 429 aaKnown RBP16.14■□□□□ 0.17
NPHP3-ACAD11-201ENST00000471702 LRRFIP1Q32MZ4 808 aaKnown RBP16.14■□□□□ 0.17
NPHP3-ACAD11-201ENST00000471702 ANKRD20A12PQ8NF67 263 aa16.14■□□□□ 0.17
NPHP3-ACAD11-201ENST00000471702 NUTM2GQ5VZR2 741 aa16.14■□□□□ 0.17
NPHP3-ACAD11-201ENST00000471702 IFIT2P09913 472 aaKnown RBP16.13■□□□□ 0.17
NPHP3-ACAD11-201ENST00000471702 EFCAB2Q5VUJ9 269 aa16.13■□□□□ 0.17
NPHP3-ACAD11-201ENST00000471702 BICD2Q8TD16 824 aa16.13■□□□□ 0.17
NPHP3-ACAD11-201ENST00000471702 TTLL5Q6EMB2 1281 aa16.13■□□□□ 0.17
NPHP3-ACAD11-201ENST00000471702 HSP90AB2PQ58FF8 381 aa16.13■□□□□ 0.17
NPHP3-ACAD11-201ENST00000471702 MINK1Q8N4C8 1332 aaPredicted RBP16.13■□□□□ 0.17
NPHP3-ACAD11-201ENST00000471702 NEUROD6Q96NK8 337 aa16.12■□□□□ 0.17
NPHP3-ACAD11-201ENST00000471702 MPHOSPH9Q99550 1183 aa16.12■□□□□ 0.17
NPHP3-ACAD11-201ENST00000471702 RALBP1Q15311 655 aa16.11■□□□□ 0.17
NPHP3-ACAD11-201ENST00000471702 CYB5RLQ6IPT4 315 aa16.11■□□□□ 0.17
NPHP3-ACAD11-201ENST00000471702 MAP7D2Q96T17 732 aa16.1■□□□□ 0.17
NPHP3-ACAD11-201ENST00000471702 EEA1Q15075 1411 aa16.1■□□□□ 0.17
NPHP3-ACAD11-201ENST00000471702 ATP2B2Q01814 1243 aa16.1■□□□□ 0.17
NPHP3-ACAD11-201ENST00000471702 GPS2Q13227 327 aa16.09■□□□□ 0.17
NPHP3-ACAD11-201ENST00000471702 VPS37CA5D8V6 355 aaPredicted RBP16.09■□□□□ 0.17
NPHP3-ACAD11-201ENST00000471702 FHAD1B1AJZ9 1412 aa16.09■□□□□ 0.17
NPHP3-ACAD11-201ENST00000471702 ZNF771Q7L3S4 317 aaPredicted RBP16.09■□□□□ 0.17
NPHP3-ACAD11-201ENST00000471702 OFD1O75665 1012 aa16.09■□□□□ 0.17
NPHP3-ACAD11-201ENST00000471702 ZKSCAN1P17029 563 aaPredicted RBP16.09■□□□□ 0.17
NPHP3-ACAD11-201ENST00000471702 STK11IPQ8N1F8 1099 aa16.08■□□□□ 0.17
NPHP3-ACAD11-201ENST00000471702 WASHC4Q2M389 1173 aa16.08■□□□□ 0.16
NPHP3-ACAD11-201ENST00000471702 ATP6V1DQ9Y5K8 247 aa16.08■□□□□ 0.16
NPHP3-ACAD11-201ENST00000471702 RUFY1Q96T51 708 aa16.07■□□□□ 0.16
NPHP3-ACAD11-201ENST00000471702 FKBP5Q13451 457 aaPredicted RBP16.07■□□□□ 0.16
NPHP3-ACAD11-201ENST00000471702 ARHGAP35Q9NRY4 1499 aa16.07■□□□□ 0.16
NPHP3-ACAD11-201ENST00000471702 CEP164Q9UPV0 1460 aa16.07■□□□□ 0.16
NPHP3-ACAD11-201ENST00000471702 G3BP1Q13283 466 aaKnown RBP eCLIP16.07■□□□□ 0.16
NPHP3-ACAD11-201ENST00000471702 HOOK1Q9UJC3 728 aaKnown RBP16.06■□□□□ 0.16
NPHP3-ACAD11-201ENST00000471702 CUX2O14529 1486 aa16.06■□□□□ 0.16
NPHP3-ACAD11-201ENST00000471702 RUFY2Q8WXA3 655 aa16.06■□□□□ 0.16
NPHP3-ACAD11-201ENST00000471702 ATP2B1P20020 1258 aa16.05■□□□□ 0.16
NPHP3-ACAD11-201ENST00000471702 SPDYE4A6NLX3 237 aa16.05■□□□□ 0.16
NPHP3-ACAD11-201ENST00000471702 RIC3Q7Z5B4 369 aa16.05■□□□□ 0.16
NPHP3-ACAD11-201ENST00000471702 ATF3P18847 181 aa16.04■□□□□ 0.16
NPHP3-ACAD11-201ENST00000471702 CARMIL1Q5VZK9 1371 aa16.04■□□□□ 0.16
NPHP3-ACAD11-201ENST00000471702 ZRSR2Q15696 482 aaKnown RBP16.04■□□□□ 0.16
NPHP3-ACAD11-201ENST00000471702 DDX58O95786 925 aaKnown RBP16.04■□□□□ 0.16
NPHP3-ACAD11-201ENST00000471702 HSP90AA2PQ14568 343 aaPredicted RBP16.04■□□□□ 0.16
NPHP3-ACAD11-201ENST00000471702 TIMELESSQ9UNS1 1208 aa16.04■□□□□ 0.16
NPHP3-ACAD11-201ENST00000471702 RB1CC1Q8TDY2 1594 aa16.04■□□□□ 0.16
NPHP3-ACAD11-201ENST00000471702 MYO15BQ96JP2 1530 aa16.04■□□□□ 0.16
NPHP3-ACAD11-201ENST00000471702 COG6Q9Y2V7 657 aa16.04■□□□□ 0.16
NPHP3-ACAD11-201ENST00000471702 PDILTQ8N807 584 aa16.03■□□□□ 0.16
NPHP3-ACAD11-201ENST00000471702 SAFBQ15424 915 aaKnown RBP eCLIP16.03■□□□□ 0.16
NPHP3-ACAD11-201ENST00000471702 RALYLQ86SE5 291 aaKnown RBP16.03■□□□□ 0.16
NPHP3-ACAD11-201ENST00000471702 CARMIL2Q6F5E8 1435 aa16.03■□□□□ 0.16
NPHP3-ACAD11-201ENST00000471702 RDXP35241 583 aaKnown RBP16.03■□□□□ 0.16
NPHP3-ACAD11-201ENST00000471702 PANK3Q9H999 370 aa16.03■□□□□ 0.16
NPHP3-ACAD11-201ENST00000471702 SETD5Q9C0A6 1442 aa16.03■□□□□ 0.16
NPHP3-ACAD11-201ENST00000471702 HMOX1P09601 288 aa16.02■□□□□ 0.16
NPHP3-ACAD11-201ENST00000471702 DDX11L8A8MPP1 907 aa16.02■□□□□ 0.15
NPHP3-ACAD11-201ENST00000471702 IPO9Q96P70 1041 aaKnown RBP16.02■□□□□ 0.15
NPHP3-ACAD11-201ENST00000471702 FAM161AQ3B820 660 aa16.01■□□□□ 0.15
NPHP3-ACAD11-201ENST00000471702 PLCD4Q9BRC7 762 aa16.01■□□□□ 0.15
NPHP3-ACAD11-201ENST00000471702 DHX37Q8IY37 1157 aaKnown RBP16.01■□□□□ 0.15
NPHP3-ACAD11-201ENST00000471702 NEFHP12036 1026 aa16.01■□□□□ 0.15
NPHP3-ACAD11-201ENST00000471702 SF3B2Q13435 895 aaKnown RBP16.01■□□□□ 0.15
NPHP3-ACAD11-201ENST00000471702 CHMP4CQ96CF2 233 aa16.01■□□□□ 0.15
NPHP3-ACAD11-201ENST00000471702 NLRP2Q9NX02 1062 aa16.01■□□□□ 0.15
NPHP3-ACAD11-201ENST00000471702 CCER2I3L3R5 266 aa16■□□□□ 0.15
NPHP3-ACAD11-201ENST00000471702 SASS6Q6UVJ0 657 aa16■□□□□ 0.15
NPHP3-ACAD11-201ENST00000471702 BRPF1P55201 1214 aaPredicted RBP16■□□□□ 0.15
NPHP3-ACAD11-201ENST00000471702 RAPGEF4Q8WZA2 1011 aa16■□□□□ 0.15
NPHP3-ACAD11-201ENST00000471702 STRN4Q9NRL3 753 aa16■□□□□ 0.15
NPHP3-ACAD11-201ENST00000471702 NUTM2BA6NNL0 878 aaPredicted RBP15.99■□□□□ 0.15
NPHP3-ACAD11-201ENST00000471702 NUTM2EB1AL46 878 aaPredicted RBP15.99■□□□□ 0.15
NPHP3-ACAD11-201ENST00000471702 NUTM2AQ8IVF1 878 aaPredicted RBP15.99■□□□□ 0.15
NPHP3-ACAD11-201ENST00000471702 RNF20Q5VTR2 975 aa15.99■□□□□ 0.15
NPHP3-ACAD11-201ENST00000471702 HMGN5P82970 282 aaKnown RBP15.99■□□□□ 0.15
NPHP3-ACAD11-201ENST00000471702 ANKRD30AQ9BXX3 1397 aa15.98■□□□□ 0.15
NPHP3-ACAD11-201ENST00000471702 CAGE1Q8TC20 777 aa15.98■□□□□ 0.15
NPHP3-ACAD11-201ENST00000471702 TSPYL4Q9UJ04 414 aa15.98■□□□□ 0.15
NPHP3-ACAD11-201ENST00000471702 CHMP4BP1P59074 171 aa15.97■□□□□ 0.15
NPHP3-ACAD11-201ENST00000471702 ZKSCAN2Q63HK3 967 aa15.97■□□□□ 0.15
NPHP3-ACAD11-201ENST00000471702 NLRP13Q86W25 1043 aa15.97■□□□□ 0.15
NPHP3-ACAD11-201ENST00000471702 CGNL1Q0VF96 1302 aa15.97■□□□□ 0.15
NPHP3-ACAD11-201ENST00000471702 ANKRD62A6NC57 917 aa15.97■□□□□ 0.15
NPHP3-ACAD11-201ENST00000471702 RBM5P52756 815 aaKnown RBP eCLIP15.97■□□□□ 0.15
NPHP3-ACAD11-201ENST00000471702 SMC3Q9UQE7 1217 aa15.97■□□□□ 0.15
NPHP3-ACAD11-201ENST00000471702 TMEM87AQ8NBN3 555 aa15.97■□□□□ 0.15
NPHP3-ACAD11-201ENST00000471702 RIPK4P57078 832 aa15.97■□□□□ 0.15
NPHP3-ACAD11-201ENST00000471702 IFT57Q9NWB7 429 aa15.96■□□□□ 0.15
NPHP3-ACAD11-201ENST00000471702 FAM13BQ9NYF5 915 aa15.96■□□□□ 0.15
NPHP3-ACAD11-201ENST00000471702 CCDC191Q8NCU4 936 aa15.96■□□□□ 0.15
NPHP3-ACAD11-201ENST00000471702 ZHX3Q9H4I2 956 aa15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms