RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 TMEM134Q9H6X4 195 aa9.19□□□□□ -0.94
VPS13A-210ENST00000471439 CCDC180Q9P1Z9 1646 aa9.19□□□□□ -0.94
VPS13A-210ENST00000471439 APLP1P51693 650 aa9.18□□□□□ -0.94
VPS13A-210ENST00000471439 PPP4CP60510 307 aa9.18□□□□□ -0.94
VPS13A-210ENST00000471439 UNC13AQ9UPW8 1703 aa9.16□□□□□ -0.94
VPS13A-210ENST00000471439 MAP2K5Q13163 448 aa9.15□□□□□ -0.94
VPS13A-210ENST00000471439 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.14□□□□□ -0.95
VPS13A-210ENST00000471439 OATP04181 439 aa9.14□□□□□ -0.95
VPS13A-210ENST00000471439 SLF2Q8IX21 1173 aa9.14□□□□□ -0.95
VPS13A-210ENST00000471439 ZC3H15Q8WU90 426 aaKnown RBP9.14□□□□□ -0.95
VPS13A-210ENST00000471439 CCDC102AQ96A19 550 aa9.14□□□□□ -0.95
VPS13A-210ENST00000471439 SLC10A3P09131 477 aa9.13□□□□□ -0.95
VPS13A-210ENST00000471439 HDGFP51858 240 aaKnown RBP9.13□□□□□ -0.95
VPS13A-210ENST00000471439 IRF6O14896 467 aa9.12□□□□□ -0.95
VPS13A-210ENST00000471439 ITGBL1O95965 494 aaPredicted RBP9.11□□□□□ -0.95
VPS13A-210ENST00000471439 NYAP1Q6ZVC0 841 aa9.11□□□□□ -0.95
VPS13A-210ENST00000471439 BICRAQ9NZM4 1560 aa9.1□□□□□ -0.95
VPS13A-210ENST00000471439 ZMYND10O75800 440 aa9.09□□□□□ -0.95
VPS13A-210ENST00000471439 CFHP08603 1231 aa9.09□□□□□ -0.95
VPS13A-210ENST00000471439 TJAP1Q5JTD0 557 aa9.09□□□□□ -0.95
VPS13A-210ENST00000471439 MTRQ99707 1265 aa9.09□□□□□ -0.95
VPS13A-210ENST00000471439 COPS2P61201 443 aa9.08□□□□□ -0.96
VPS13A-210ENST00000471439 IFFO2Q5TF58 517 aa9.08□□□□□ -0.96
VPS13A-210ENST00000471439 ZNF516Q92618 1163 aa9.08□□□□□ -0.96
VPS13A-210ENST00000471439 BCANQ96GW7 911 aa9.08□□□□□ -0.96
VPS13A-210ENST00000471439 MINK1Q8N4C8 1332 aaPredicted RBP9.06□□□□□ -0.96
VPS13A-210ENST00000471439 DDX11L8A8MPP1 907 aa9.06□□□□□ -0.96
VPS13A-210ENST00000471439 MDM2Q00987 491 aaPredicted RBP9.06□□□□□ -0.96
VPS13A-210ENST00000471439 BARGINQ6ZT62 677 aa9.06□□□□□ -0.96
VPS13A-210ENST00000471439 DAXXQ9UER7 740 aaPredicted RBP9.06□□□□□ -0.96
VPS13A-210ENST00000471439 KCNC4Q03721 635 aa9.05□□□□□ -0.96
VPS13A-210ENST00000471439 BLOC1S3Q6QNY0 202 aa9.05□□□□□ -0.96
VPS13A-210ENST00000471439 RDH13Q8NBN7 331 aa9.05□□□□□ -0.96
VPS13A-210ENST00000471439 A0A0G2JS52 829 aa9.04□□□□□ -0.96
VPS13A-210ENST00000471439 SLC4A3P48751 1232 aa9.04□□□□□ -0.96
VPS13A-210ENST00000471439 NKX2-3Q8TAU0 364 aa9.04□□□□□ -0.96
VPS13A-210ENST00000471439 TLL1O43897 1013 aa9.03□□□□□ -0.96
VPS13A-210ENST00000471439 REPIN1Q9BWE0 567 aaKnown RBP9.03□□□□□ -0.96
VPS13A-210ENST00000471439 PCDHB3Q9Y5E6 796 aa9.03□□□□□ -0.96
VPS13A-210ENST00000471439 PUS10Q3MIT2 529 aaKnown RBP9.02□□□□□ -0.97
VPS13A-210ENST00000471439 KRI1Q8N9T8 703 aaKnown RBP9.02□□□□□ -0.97
VPS13A-210ENST00000471439 IL21Q9HBE4 155 aa9.02□□□□□ -0.97
VPS13A-210ENST00000471439 ACTN4O43707 911 aaKnown RBP9.01□□□□□ -0.97
VPS13A-210ENST00000471439 KMT5BQ4FZB7 885 aa9□□□□□ -0.97
VPS13A-210ENST00000471439 NECTIN2Q92692 538 aa9□□□□□ -0.97
VPS13A-210ENST00000471439 FUT2Q10981 343 aa8.99□□□□□ -0.97
VPS13A-210ENST00000471439 SLC24A3Q9HC58 644 aa8.98□□□□□ -0.97
VPS13A-210ENST00000471439 ZPR1O75312 459 aa8.97□□□□□ -0.97
VPS13A-210ENST00000471439 CD46P15529 392 aa8.97□□□□□ -0.97
VPS13A-210ENST00000471439 TMUB1Q9BVT8 246 aa8.97□□□□□ -0.97
VPS13A-210ENST00000471439 PRR14Q9BWN1 585 aa8.97□□□□□ -0.97
VPS13A-210ENST00000471439 RGS20O76081 388 aa8.96□□□□□ -0.98
VPS13A-210ENST00000471439 GCGRP47871 477 aa8.96□□□□□ -0.98
VPS13A-210ENST00000471439 SULF1Q8IWU6 871 aa8.96□□□□□ -0.98
VPS13A-210ENST00000471439 HLA-CQ95604 372 aa8.96□□□□□ -0.98
VPS13A-210ENST00000471439 GPCPD1Q9NPB8 672 aa8.96□□□□□ -0.98
VPS13A-210ENST00000471439 FAM217BQ9NTX9 383 aaPredicted RBP8.96□□□□□ -0.98
VPS13A-210ENST00000471439 PRKCSHP14314 528 aaPredicted RBP8.95□□□□□ -0.98
VPS13A-210ENST00000471439 TRIM66O15016 1216 aa8.94□□□□□ -0.98
VPS13A-210ENST00000471439 CLCN1P35523 988 aa8.94□□□□□ -0.98
VPS13A-210ENST00000471439 TTLL12Q14166 644 aaPredicted RBP8.94□□□□□ -0.98
VPS13A-210ENST00000471439 AMHR2Q16671 573 aa8.93□□□□□ -0.98
VPS13A-210ENST00000471439 PPP1R18Q6NYC8 613 aa8.93□□□□□ -0.98
VPS13A-210ENST00000471439 PARP9Q8IXQ6 854 aa8.93□□□□□ -0.98
VPS13A-210ENST00000471439 NACADO15069 1562 aa8.93□□□□□ -0.98
VPS13A-210ENST00000471439 EIF4G1Q04637 1599 aaKnown RBP8.93□□□□□ -0.98
VPS13A-210ENST00000471439 ERCC6Q03468 1493 aa8.92□□□□□ -0.98
VPS13A-210ENST00000471439 MORN1Q5T089 497 aa8.92□□□□□ -0.98
VPS13A-210ENST00000471439 GIGYF2Q6Y7W6 1299 aaKnown RBP8.92□□□□□ -0.98
VPS13A-210ENST00000471439 RSPH4AQ5TD94 716 aa8.91□□□□□ -0.98
VPS13A-210ENST00000471439 GUCA2AQ02747 115 aa8.9□□□□□ -0.98
VPS13A-210ENST00000471439 SCUBE3Q8IX30 993 aa8.9□□□□□ -0.98
VPS13A-210ENST00000471439 AK7Q96M32 723 aa8.9□□□□□ -0.98
VPS13A-210ENST00000471439 SLC27A5Q9Y2P5 690 aa8.9□□□□□ -0.98
VPS13A-210ENST00000471439 S1PR4O95977 384 aa8.89□□□□□ -0.99
VPS13A-210ENST00000471439 RNF19BQ6ZMZ0 732 aa8.89□□□□□ -0.99
VPS13A-210ENST00000471439 PPEF1O14829 653 aaPredicted RBP8.88□□□□□ -0.99
VPS13A-210ENST00000471439 KDM4AO75164 1064 aa8.88□□□□□ -0.99
VPS13A-210ENST00000471439 NR1I2O75469 434 aa8.88□□□□□ -0.99
VPS13A-210ENST00000471439 ADH1BP00325 375 aa8.88□□□□□ -0.99
VPS13A-210ENST00000471439 MS4A1P11836 297 aa8.88□□□□□ -0.99
VPS13A-210ENST00000471439 SSTR3P32745 418 aaPredicted RBP8.88□□□□□ -0.99
VPS13A-210ENST00000471439 ATP6V1AP38606 617 aa8.88□□□□□ -0.99
VPS13A-210ENST00000471439 PRDM9Q9NQV7 894 aa8.88□□□□□ -0.99
VPS13A-210ENST00000471439 PDE4DQ08499 809 aa8.87□□□□□ -0.99
VPS13A-210ENST00000471439 THAP11Q96EK4 314 aa8.87□□□□□ -0.99
VPS13A-210ENST00000471439 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.87□□□□□ -0.99
VPS13A-210ENST00000471439 RNF223E7ERA6 249 aa8.86□□□□□ -0.99
VPS13A-210ENST00000471439 HOXA2O43364 376 aa8.86□□□□□ -0.99
VPS13A-210ENST00000471439 TPRNQ4KMQ1 711 aa8.85□□□□□ -0.99
VPS13A-210ENST00000471439 SPSB2Q99619 263 aa8.85□□□□□ -0.99
VPS13A-210ENST00000471439 EMID1Q96A84 441 aaPredicted RBP8.84□□□□□ -0.99
VPS13A-210ENST00000471439 FAM160A2Q8N612 972 aaPredicted RBP8.83□□□□□ -1
VPS13A-210ENST00000471439 SPIRE2Q8WWL2 714 aa8.83□□□□□ -1
VPS13A-210ENST00000471439 PLA2G2CQ5R387 149 aa8.82□□□□□ -1
VPS13A-210ENST00000471439 SYMPKQ92797 1274 aaKnown RBP8.82□□□□□ -1
VPS13A-210ENST00000471439 BEGAINQ9BUH8 593 aa8.82□□□□□ -1
VPS13A-210ENST00000471439 SLC6A16Q9GZN6 736 aa8.82□□□□□ -1
VPS13A-210ENST00000471439 NDUFV2P19404 249 aa8.81□□□□□ -1
VPS13A-210ENST00000471439 BRICD5Q6PL45 260 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms