RNA–Protein interactions for RNA: ENST00000471342.1

SF3A1-207, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 459 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-207ENST00000471342 RPGRIP1LQ68CZ1 1315 aa14.38□□□□□ -0.11
SF3A1-207ENST00000471342 MYOM2P54296 1465 aa14.38□□□□□ -0.11
SF3A1-207ENST00000471342 MYO5BQ9ULV0 1848 aa14.37□□□□□ -0.11
SF3A1-207ENST00000471342 MED14O60244 1454 aa14.37□□□□□ -0.11
SF3A1-207ENST00000471342 PIK3C2GO75747 1445 aa14.35□□□□□ -0.11
SF3A1-207ENST00000471342 RIMS2Q9UQ26 1411 aa14.35□□□□□ -0.11
SF3A1-207ENST00000471342 SETD1BQ9UPS6 1966 aaKnown RBP14.35□□□□□ -0.11
SF3A1-207ENST00000471342 DCAF11Q8TEB1 546 aa14.35□□□□□ -0.11
SF3A1-207ENST00000471342 NUTM2DQ5VT03 806 aaPredicted RBP14.34□□□□□ -0.11
SF3A1-207ENST00000471342 PPLO60437 1756 aa14.34□□□□□ -0.11
SF3A1-207ENST00000471342 TONSLQ96HA7 1378 aa14.34□□□□□ -0.11
SF3A1-207ENST00000471342 NRXN3Q9Y4C0 1643 aa14.33□□□□□ -0.11
SF3A1-207ENST00000471342 ADAMTS13Q76LX8 1427 aa14.33□□□□□ -0.11
SF3A1-207ENST00000471342 KIF1BO60333 1816 aa14.32□□□□□ -0.12
SF3A1-207ENST00000471342 ASXL1Q8IXJ9 1541 aa14.32□□□□□ -0.12
SF3A1-207ENST00000471342 NBPF1Q3BBV0 1214 aa14.32□□□□□ -0.12
SF3A1-207ENST00000471342 SENP3Q9H4L4 574 aaPredicted RBP14.32□□□□□ -0.12
SF3A1-207ENST00000471342 CHGAP10645 457 aaKnown RBP14.31□□□□□ -0.12
SF3A1-207ENST00000471342 STAC3Q96MF2 364 aa14.31□□□□□ -0.12
SF3A1-207ENST00000471342 C14orf93Q9H972 538 aaKnown RBP14.31□□□□□ -0.12
SF3A1-207ENST00000471342 KDM2AQ9Y2K7 1162 aa14.31□□□□□ -0.12
SF3A1-207ENST00000471342 GPRASP1Q5JY77 1395 aa14.31□□□□□ -0.12
SF3A1-207ENST00000471342 ADGRB1O14514 1584 aa14.3□□□□□ -0.12
SF3A1-207ENST00000471342 HSPA2P54652 639 aa14.3□□□□□ -0.12
SF3A1-207ENST00000471342 THEMISQ8N1K5 641 aaPredicted RBP14.3□□□□□ -0.12
SF3A1-207ENST00000471342 CFAP70Q5T0N1 1121 aa14.29□□□□□ -0.12
SF3A1-207ENST00000471342 PLEKHG1Q9ULL1 1385 aa14.29□□□□□ -0.12
SF3A1-207ENST00000471342 SETD1AO15047 1707 aaKnown RBP14.28□□□□□ -0.12
SF3A1-207ENST00000471342 SETBP1Q9Y6X0 1596 aa14.28□□□□□ -0.12
SF3A1-207ENST00000471342 RALGAPBQ86X10 1494 aa14.27□□□□□ -0.12
SF3A1-207ENST00000471342 SCAF11Q99590 1463 aaKnown RBP14.27□□□□□ -0.12
SF3A1-207ENST00000471342 TXNDC2Q86VQ3 553 aa14.27□□□□□ -0.13
SF3A1-207ENST00000471342 PTPRUQ92729 1446 aa14.26□□□□□ -0.13
SF3A1-207ENST00000471342 METP08581 1390 aa14.26□□□□□ -0.13
SF3A1-207ENST00000471342 NCKAP5LQ9HCH0 1330 aa14.26□□□□□ -0.13
SF3A1-207ENST00000471342 VGFO15240 615 aaPredicted RBP14.26□□□□□ -0.13
SF3A1-207ENST00000471342 ZEB1P37275 1124 aaPredicted RBP14.26□□□□□ -0.13
SF3A1-207ENST00000471342 ZNF326Q5BKZ1 582 aaKnown RBP14.26□□□□□ -0.13
SF3A1-207ENST00000471342 TRPM1Q7Z4N2 1603 aa14.26□□□□□ -0.13
SF3A1-207ENST00000471342 ALKQ9UM73 1620 aa14.25□□□□□ -0.13
SF3A1-207ENST00000471342 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.24□□□□□ -0.13
SF3A1-207ENST00000471342 STRCQ7RTU9 1775 aa14.24□□□□□ -0.13
SF3A1-207ENST00000471342 STAG3Q9UJ98 1225 aa14.22□□□□□ -0.13
SF3A1-207ENST00000471342 TBX22Q9Y458 520 aa14.22□□□□□ -0.13
SF3A1-207ENST00000471342 TMEM132EQ6IEE7 984 aa14.21□□□□□ -0.13
SF3A1-207ENST00000471342 ANKLE2Q86XL3 938 aa14.21□□□□□ -0.13
SF3A1-207ENST00000471342 KIAA1210Q9ULL0 1709 aa14.21□□□□□ -0.14
SF3A1-207ENST00000471342 IQGAP1P46940 1657 aa14.2□□□□□ -0.14
SF3A1-207ENST00000471342 NPHP4O75161 1426 aaPredicted RBP14.2□□□□□ -0.14
SF3A1-207ENST00000471342 SLC26A8Q96RN1 970 aa14.19□□□□□ -0.14
SF3A1-207ENST00000471342 PHF23Q9BUL5 403 aaPredicted RBP14.19□□□□□ -0.14
SF3A1-207ENST00000471342 TESK2Q96S53 571 aa14.18□□□□□ -0.14
SF3A1-207ENST00000471342 TECPR2O15040 1411 aa14.17□□□□□ -0.14
SF3A1-207ENST00000471342 LAMC1P11047 1609 aa14.17□□□□□ -0.14
SF3A1-207ENST00000471342 ABCC11Q96J66 1382 aa14.17□□□□□ -0.14
SF3A1-207ENST00000471342 C11orf95C9JLR9 678 aaPredicted RBP14.16□□□□□ -0.14
SF3A1-207ENST00000471342 EID1Q9Y6B2 187 aa14.16□□□□□ -0.14
SF3A1-207ENST00000471342 LRPPRCP42704 1394 aaKnown RBP14.16□□□□□ -0.14
SF3A1-207ENST00000471342 YTHDC2Q9H6S0 1430 aaKnown RBP14.15□□□□□ -0.14
SF3A1-207ENST00000471342 ROCK2O75116 1388 aaKnown RBP14.14□□□□□ -0.15
SF3A1-207ENST00000471342 ROBO2Q9HCK4 1378 aa14.14□□□□□ -0.15
SF3A1-207ENST00000471342 PLEKHH1Q9ULM0 1364 aa14.14□□□□□ -0.15
SF3A1-207ENST00000471342 HDGFP51858 240 aaKnown RBP14.14□□□□□ -0.15
SF3A1-207ENST00000471342 HSPA5P11021 654 aaKnown RBP14.13□□□□□ -0.15
SF3A1-207ENST00000471342 SIRT1Q96EB6 747 aa14.13□□□□□ -0.15
SF3A1-207ENST00000471342 DIP2AQ14689 1571 aa14.13□□□□□ -0.15
SF3A1-207ENST00000471342 PIK3R4Q99570 1358 aa14.12□□□□□ -0.15
SF3A1-207ENST00000471342 CARD11Q9BXL7 1154 aa14.12□□□□□ -0.15
SF3A1-207ENST00000471342 POLR1AO95602 1720 aaPredicted RBP14.12□□□□□ -0.15
SF3A1-207ENST00000471342 XRN1Q8IZH2 1706 aaKnown RBP14.12□□□□□ -0.15
SF3A1-207ENST00000471342 DLC1Q96QB1 1528 aa14.11□□□□□ -0.15
SF3A1-207ENST00000471342 USP47Q96K76 1375 aa14.1□□□□□ -0.15
SF3A1-207ENST00000471342 NWD1Q149M9 1564 aa14.1□□□□□ -0.15
SF3A1-207ENST00000471342 STRCP1A6NGW2 1772 aa14.1□□□□□ -0.15
SF3A1-207ENST00000471342 ST20-MTHFSA0A0A6YYL1 179 aa14.1□□□□□ -0.15
SF3A1-207ENST00000471342 KCNA6P17658 529 aa14.1□□□□□ -0.15
SF3A1-207ENST00000471342 HIRIP3Q9BW71 556 aaPredicted RBP14.1□□□□□ -0.15
SF3A1-207ENST00000471342 TRAK1Q9UPV9 953 aa14.09□□□□□ -0.15
SF3A1-207ENST00000471342 AMOTL2Q9Y2J4 779 aa14.09□□□□□ -0.15
SF3A1-207ENST00000471342 CPS1P31327 1500 aa14.09□□□□□ -0.15
SF3A1-207ENST00000471342 FAM135BQ49AJ0 1406 aa14.08□□□□□ -0.15
SF3A1-207ENST00000471342 WAPLQ7Z5K2 1190 aa14.08□□□□□ -0.16
SF3A1-207ENST00000471342 ILDR1Q86SU0 546 aaPredicted RBP14.07□□□□□ -0.16
SF3A1-207ENST00000471342 SBNO2Q9Y2G9 1366 aa14.07□□□□□ -0.16
SF3A1-207ENST00000471342 PTCH1Q13635 1447 aa14.07□□□□□ -0.16
SF3A1-207ENST00000471342 CHD2O14647 1828 aaKnown RBP14.06□□□□□ -0.16
SF3A1-207ENST00000471342 STK26Q9P289 416 aa14.06□□□□□ -0.16
SF3A1-207ENST00000471342 ZNF335Q9H4Z2 1342 aaPredicted RBP14.06□□□□□ -0.16
SF3A1-207ENST00000471342 KNDC1Q76NI1 1749 aa14.06□□□□□ -0.16
SF3A1-207ENST00000471342 ARHGEF28Q8N1W1 1705 aaKnown RBP14.06□□□□□ -0.16
SF3A1-207ENST00000471342 LTBP4Q8N2S1 1624 aa14.04□□□□□ -0.16
SF3A1-207ENST00000471342 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.04□□□□□ -0.16
SF3A1-207ENST00000471342 EIF4G2P78344 907 aaKnown RBP eCLIP14.04□□□□□ -0.16
SF3A1-207ENST00000471342 PRAM1Q96QH2 718 aa14.04□□□□□ -0.16
SF3A1-207ENST00000471342 DISP3Q9P2K9 1392 aa14.04□□□□□ -0.16
SF3A1-207ENST00000471342 TULP4Q9NRJ4 1543 aa14.03□□□□□ -0.16
SF3A1-207ENST00000471342 WASHC2AQ641Q2 1341 aa14.02□□□□□ -0.17
SF3A1-207ENST00000471342 RBM33Q96EV2 1170 aaKnown RBP14.02□□□□□ -0.17
SF3A1-207ENST00000471342 CENPJQ9HC77 1338 aaPredicted RBP14.01□□□□□ -0.17
SF3A1-207ENST00000471342 LRRC7Q96NW7 1537 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms