RNA–Protein interactions for RNA: ENST00000470241.2

SMC1A-206, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 3

Gene SMC1A, Length 838 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-206ENST00000470241 RPGRIP1LQ68CZ1 1315 aa15.36■□□□□ 0.05
SMC1A-206ENST00000470241 CLSPNQ9HAW4 1339 aa15.36■□□□□ 0.05
SMC1A-206ENST00000470241 SCAF11Q99590 1463 aaKnown RBP15.35■□□□□ 0.05
SMC1A-206ENST00000470241 NUTM2DQ5VT03 806 aaPredicted RBP15.35■□□□□ 0.05
SMC1A-206ENST00000470241 EID1Q9Y6B2 187 aa15.35■□□□□ 0.05
SMC1A-206ENST00000470241 KIF1BO60333 1816 aa15.35■□□□□ 0.05
SMC1A-206ENST00000470241 MYO5BQ9ULV0 1848 aa15.34■□□□□ 0.05
SMC1A-206ENST00000470241 NEXMIFQ5QGS0 1516 aa15.34■□□□□ 0.05
SMC1A-206ENST00000470241 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.34■□□□□ 0.05
SMC1A-206ENST00000470241 HDGFP51858 240 aaKnown RBP15.33■□□□□ 0.04
SMC1A-206ENST00000470241 MED14O60244 1454 aa15.32■□□□□ 0.04
SMC1A-206ENST00000470241 STRCQ7RTU9 1775 aa15.31■□□□□ 0.04
SMC1A-206ENST00000470241 PPP1R15AO75807 674 aaPredicted RBP15.31■□□□□ 0.04
SMC1A-206ENST00000470241 NPHP4O75161 1426 aaPredicted RBP15.31■□□□□ 0.04
SMC1A-206ENST00000470241 PLEKHG1Q9ULL1 1385 aa15.3■□□□□ 0.04
SMC1A-206ENST00000470241 ADGRF5Q8IZF2 1346 aa15.29■□□□□ 0.04
SMC1A-206ENST00000470241 VGFO15240 615 aaPredicted RBP15.29■□□□□ 0.04
SMC1A-206ENST00000470241 L3MBTL2Q969R5 705 aa15.29■□□□□ 0.04
SMC1A-206ENST00000470241 DCAF11Q8TEB1 546 aa15.28■□□□□ 0.04
SMC1A-206ENST00000470241 SENP3Q9H4L4 574 aaPredicted RBP15.28■□□□□ 0.04
SMC1A-206ENST00000470241 POLR1AO95602 1720 aaPredicted RBP15.27■□□□□ 0.04
SMC1A-206ENST00000470241 MYOM2P54296 1465 aa15.27■□□□□ 0.03
SMC1A-206ENST00000470241 PPLO60437 1756 aa15.26■□□□□ 0.03
SMC1A-206ENST00000470241 KDM2AQ9Y2K7 1162 aa15.26■□□□□ 0.03
SMC1A-206ENST00000470241 DMRT2Q9Y5R5 561 aa15.26■□□□□ 0.03
SMC1A-206ENST00000470241 NRXN1Q9ULB1 1477 aa15.26■□□□□ 0.03
SMC1A-206ENST00000470241 IFT172Q9UG01 1749 aa15.26■□□□□ 0.03
SMC1A-206ENST00000470241 ADAMTS13Q76LX8 1427 aa15.26■□□□□ 0.03
SMC1A-206ENST00000470241 TONSLQ96HA7 1378 aa15.25■□□□□ 0.03
SMC1A-206ENST00000470241 BCANQ96GW7 911 aa15.25■□□□□ 0.03
SMC1A-206ENST00000470241 STAC3Q96MF2 364 aa15.25■□□□□ 0.03
SMC1A-206ENST00000470241 SETBP1Q9Y6X0 1596 aa15.24■□□□□ 0.03
SMC1A-206ENST00000470241 SLC26A8Q96RN1 970 aa15.24■□□□□ 0.03
SMC1A-206ENST00000470241 IQGAP1P46940 1657 aa15.24■□□□□ 0.03
SMC1A-206ENST00000470241 PIK3C2GO75747 1445 aa15.24■□□□□ 0.03
SMC1A-206ENST00000470241 NRXN3Q9Y4C0 1643 aa15.22■□□□□ 0.03
SMC1A-206ENST00000470241 TBX22Q9Y458 520 aa15.22■□□□□ 0.03
SMC1A-206ENST00000470241 TIMELESSQ9UNS1 1208 aa15.21■□□□□ 0.03
SMC1A-206ENST00000470241 PRAG1Q86YV5 1406 aa15.2■□□□□ 0.02
SMC1A-206ENST00000470241 C14orf93Q9H972 538 aaKnown RBP15.2■□□□□ 0.02
SMC1A-206ENST00000470241 ALKQ9UM73 1620 aa15.19■□□□□ 0.02
SMC1A-206ENST00000470241 CFAP70Q5T0N1 1121 aa15.19■□□□□ 0.02
SMC1A-206ENST00000470241 METP08581 1390 aa15.19■□□□□ 0.02
SMC1A-206ENST00000470241 NBPF8Q3BBV2 869 aa15.18■□□□□ 0.02
SMC1A-206ENST00000470241 DIP2AQ14689 1571 aa15.18■□□□□ 0.02
SMC1A-206ENST00000470241 ZNF335Q9H4Z2 1342 aaPredicted RBP15.17■□□□□ 0.02
SMC1A-206ENST00000470241 PIK3R4Q99570 1358 aa15.16■□□□□ 0.02
SMC1A-206ENST00000470241 TMEM132EQ6IEE7 984 aa15.15■□□□□ 0.02
SMC1A-206ENST00000470241 ASXL1Q8IXJ9 1541 aa15.15■□□□□ 0.02
SMC1A-206ENST00000470241 PTPRUQ92729 1446 aa15.15■□□□□ 0.02
SMC1A-206ENST00000470241 SETD1AO15047 1707 aaKnown RBP15.14■□□□□ 0.01
SMC1A-206ENST00000470241 KCNA6P17658 529 aa15.14■□□□□ 0.01
SMC1A-206ENST00000470241 NBPF1Q3BBV0 1214 aa15.13■□□□□ 0.01
SMC1A-206ENST00000470241 ADGRB1O14514 1584 aa15.12■□□□□ 0.01
SMC1A-206ENST00000470241 AMOTL2Q9Y2J4 779 aa15.12■□□□□ 0.01
SMC1A-206ENST00000470241 LAMC1P11047 1609 aa15.11■□□□□ 0.01
SMC1A-206ENST00000470241 NWD1Q149M9 1564 aa15.11■□□□□ 0.01
SMC1A-206ENST00000470241 LRPPRCP42704 1394 aaKnown RBP15.11■□□□□ 0.01
SMC1A-206ENST00000470241 LTBP4Q8N2S1 1624 aa15.1■□□□□ 0.01
SMC1A-206ENST00000470241 YTHDC2Q9H6S0 1430 aaKnown RBP15.09■□□□□ 0.01
SMC1A-206ENST00000470241 ABCC11Q96J66 1382 aa15.09■□□□□ 0.01
SMC1A-206ENST00000470241 KIAA1210Q9ULL0 1709 aa15.09■□□□□ 0.01
SMC1A-206ENST00000470241 STK26Q9P289 416 aa15.08■□□□□ 0
SMC1A-206ENST00000470241 STRCP1A6NGW2 1772 aa15.08■□□□□ 0
SMC1A-206ENST00000470241 NKTRP30414 1462 aaKnown RBP15.08■□□□□ 0
SMC1A-206ENST00000470241 RALGAPBQ86X10 1494 aa15.08■□□□□ 0
SMC1A-206ENST00000470241 TRPM1Q7Z4N2 1603 aa15.07■□□□□ 0
SMC1A-206ENST00000470241 XRN1Q8IZH2 1706 aaKnown RBP15.07■□□□□ 0
SMC1A-206ENST00000470241 CHD2O14647 1828 aaKnown RBP15.07■□□□□ 0
SMC1A-206ENST00000470241 ROCK2O75116 1388 aaKnown RBP15.07■□□□□ 0
SMC1A-206ENST00000470241 GPRASP1Q5JY77 1395 aa15.07■□□□□ 0
SMC1A-206ENST00000470241 ROBO2Q9HCK4 1378 aa15.07■□□□□ 0
SMC1A-206ENST00000470241 TECPR2O15040 1411 aa15.07■□□□□ 0
SMC1A-206ENST00000470241 CPS1P31327 1500 aa15.07■□□□□ 0
SMC1A-206ENST00000470241 PTCH1Q13635 1447 aa15.06■□□□□ 0
SMC1A-206ENST00000470241 PROSER2Q86WR7 435 aaPredicted RBP15.05■□□□□ -0
SMC1A-206ENST00000470241 LRRC7Q96NW7 1537 aa15.05■□□□□ -0
SMC1A-206ENST00000470241 SIRT1Q96EB6 747 aa15.04■□□□□ -0
SMC1A-206ENST00000470241 RBM33Q96EV2 1170 aaKnown RBP15.04■□□□□ -0
SMC1A-206ENST00000470241 TRAK1Q9UPV9 953 aa15.04■□□□□ -0
SMC1A-206ENST00000470241 TMEM94Q12767 1356 aa15.03■□□□□ -0
SMC1A-206ENST00000470241 DLC1Q96QB1 1528 aa15.02■□□□□ -0
SMC1A-206ENST00000470241 PLEKHH1Q9ULM0 1364 aa15.02■□□□□ -0
SMC1A-206ENST00000470241 WAPLQ7Z5K2 1190 aa15.02■□□□□ -0
SMC1A-206ENST00000470241 CARD11Q9BXL7 1154 aa15.02■□□□□ -0
SMC1A-206ENST00000470241 FAM135BQ49AJ0 1406 aa15.01□□□□□ -0.01
SMC1A-206ENST00000470241 PRAM1Q96QH2 718 aa15.01□□□□□ -0.01
SMC1A-206ENST00000470241 KNDC1Q76NI1 1749 aa15□□□□□ -0.01
SMC1A-206ENST00000470241 NCOA3Q9Y6Q9 1424 aa15□□□□□ -0.01
SMC1A-206ENST00000470241 CERKQ8TCT0 537 aa14.99□□□□□ -0.01
SMC1A-206ENST00000470241 POGKQ9P215 609 aa14.98□□□□□ -0.01
SMC1A-206ENST00000470241 SAFB2Q14151 953 aaKnown RBP eCLIP14.97□□□□□ -0.01
SMC1A-206ENST00000470241 ADGRL3Q9HAR2 1447 aa14.96□□□□□ -0.01
SMC1A-206ENST00000470241 IQSEC2Q5JU85 1478 aa14.95□□□□□ -0.02
SMC1A-206ENST00000470241 CENPJQ9HC77 1338 aaPredicted RBP14.95□□□□□ -0.02
SMC1A-206ENST00000470241 ARHGEF28Q8N1W1 1705 aaKnown RBP14.95□□□□□ -0.02
SMC1A-206ENST00000470241 ZEB1P37275 1124 aaPredicted RBP14.95□□□□□ -0.02
SMC1A-206ENST00000470241 C14orf37Q86TY3 774 aa14.95□□□□□ -0.02
SMC1A-206ENST00000470241 C19orf44Q9H6X5 657 aa14.95□□□□□ -0.02
SMC1A-206ENST00000470241 EIF3AQ14152 1382 aaKnown RBP14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms