RNA–Protein interactions for RNA: ENST00000468300.5

BRCA1-208, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best) BASIC

Gene BRCA1, Length 3,273 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-208ENST00000468300 KLHL34Q8N239 644 aa11.73□□□□□ -0.53
BRCA1-208ENST00000468300 C11orf95C9JLR9 678 aaPredicted RBP11.72□□□□□ -0.53
BRCA1-208ENST00000468300 NBPF1Q3BBV0 1214 aa11.72□□□□□ -0.53
BRCA1-208ENST00000468300 ZNF326Q5BKZ1 582 aaKnown RBP11.72□□□□□ -0.53
BRCA1-208ENST00000468300 IQGAP1P46940 1657 aa11.72□□□□□ -0.53
BRCA1-208ENST00000468300 IDI1Q13907 227 aa11.71□□□□□ -0.53
BRCA1-208ENST00000468300 MLECQ14165 292 aa11.71□□□□□ -0.53
BRCA1-208ENST00000468300 ZMYM3Q14202 1370 aa11.71□□□□□ -0.53
BRCA1-208ENST00000468300 FER1L4A9Z1Z3 1794 aa11.71□□□□□ -0.54
BRCA1-208ENST00000468300 C3P01024 1663 aa11.71□□□□□ -0.54
BRCA1-208ENST00000468300 EIF4G2P78344 907 aaKnown RBP eCLIP11.7□□□□□ -0.54
BRCA1-208ENST00000468300 USP47Q96K76 1375 aa11.7□□□□□ -0.54
BRCA1-208ENST00000468300 ADGRF5Q8IZF2 1346 aa11.7□□□□□ -0.54
BRCA1-208ENST00000468300 WASHC2AQ641Q2 1341 aa11.69□□□□□ -0.54
BRCA1-208ENST00000468300 PIK3C2GO75747 1445 aa11.68□□□□□ -0.54
BRCA1-208ENST00000468300 ROCK2O75116 1388 aaKnown RBP11.68□□□□□ -0.54
BRCA1-208ENST00000468300 STAC3Q96MF2 364 aa11.68□□□□□ -0.54
BRCA1-208ENST00000468300 SLC52A1Q9NWF4 448 aa11.68□□□□□ -0.54
BRCA1-208ENST00000468300 ARXQ96QS3 562 aa11.67□□□□□ -0.54
BRCA1-208ENST00000468300 KDM5AP29375 1690 aaKnown RBP11.66□□□□□ -0.54
BRCA1-208ENST00000468300 ADAMTSL3P82987 1691 aa11.66□□□□□ -0.54
BRCA1-208ENST00000468300 ADGRB1O14514 1584 aa11.66□□□□□ -0.54
BRCA1-208ENST00000468300 A2ML1A8K2U0 1454 aa11.66□□□□□ -0.54
BRCA1-208ENST00000468300 CARD11Q9BXL7 1154 aa11.66□□□□□ -0.54
BRCA1-208ENST00000468300 UBR1Q8IWV7 1749 aa11.66□□□□□ -0.54
BRCA1-208ENST00000468300 SETBP1Q9Y6X0 1596 aa11.65□□□□□ -0.54
BRCA1-208ENST00000468300 ARID4BQ4LE39 1312 aaPredicted RBP11.65□□□□□ -0.54
BRCA1-208ENST00000468300 ZFYVE9O95405 1425 aa11.65□□□□□ -0.54
BRCA1-208ENST00000468300 RPGRIP1LQ68CZ1 1315 aa11.65□□□□□ -0.54
BRCA1-208ENST00000468300 MIER1Q8N108 512 aa11.64□□□□□ -0.55
BRCA1-208ENST00000468300 CCDC7Q96M83 1385 aa11.64□□□□□ -0.55
BRCA1-208ENST00000468300 SETD1AO15047 1707 aaKnown RBP11.64□□□□□ -0.55
BRCA1-208ENST00000468300 DDX10Q13206 875 aaKnown RBP11.63□□□□□ -0.55
BRCA1-208ENST00000468300 KIF7Q2M1P5 1343 aa11.63□□□□□ -0.55
BRCA1-208ENST00000468300 ASXL1Q8IXJ9 1541 aa11.63□□□□□ -0.55
BRCA1-208ENST00000468300 MYO3AQ8NEV4 1616 aa11.63□□□□□ -0.55
BRCA1-208ENST00000468300 ST20-MTHFSA0A0A6YYL1 179 aa11.62□□□□□ -0.55
BRCA1-208ENST00000468300 TULP1O00294 542 aaPredicted RBP11.62□□□□□ -0.55
BRCA1-208ENST00000468300 CFAP70Q5T0N1 1121 aa11.62□□□□□ -0.55
BRCA1-208ENST00000468300 TESK2Q96S53 571 aa11.62□□□□□ -0.55
BRCA1-208ENST00000468300 NRXN3Q9Y4C0 1643 aa11.62□□□□□ -0.55
BRCA1-208ENST00000468300 CHGAP10645 457 aaKnown RBP11.62□□□□□ -0.55
BRCA1-208ENST00000468300 RIMS1Q86UR5 1692 aaKnown RBP11.62□□□□□ -0.55
BRCA1-208ENST00000468300 SCAF11Q99590 1463 aaKnown RBP11.61□□□□□ -0.55
BRCA1-208ENST00000468300 TNRQ92752 1358 aa11.61□□□□□ -0.55
BRCA1-208ENST00000468300 CEBPAP49715 358 aaPredicted RBP11.61□□□□□ -0.55
BRCA1-208ENST00000468300 C14orf93Q9H972 538 aaKnown RBP11.61□□□□□ -0.55
BRCA1-208ENST00000468300 NUTM2DQ5VT03 806 aaPredicted RBP11.6□□□□□ -0.55
BRCA1-208ENST00000468300 PTPRMP28827 1452 aa11.59□□□□□ -0.55
BRCA1-208ENST00000468300 ARHGEF28Q8N1W1 1705 aaKnown RBP11.58□□□□□ -0.55
BRCA1-208ENST00000468300 ALKQ9UM73 1620 aa11.58□□□□□ -0.56
BRCA1-208ENST00000468300 DISP3Q9P2K9 1392 aa11.57□□□□□ -0.56
BRCA1-208ENST00000468300 NLRP1Q9C000 1473 aa11.57□□□□□ -0.56
BRCA1-208ENST00000468300 RIMS2Q9UQ26 1411 aa11.56□□□□□ -0.56
BRCA1-208ENST00000468300 VGFO15240 615 aaPredicted RBP11.56□□□□□ -0.56
BRCA1-208ENST00000468300 ESF1Q9H501 851 aaKnown RBP11.56□□□□□ -0.56
BRCA1-208ENST00000468300 MYOM1P52179 1685 aa11.55□□□□□ -0.56
BRCA1-208ENST00000468300 QRICH2Q9H0J4 1663 aa11.55□□□□□ -0.56
BRCA1-208ENST00000468300 ZNF142P52746 1687 aaPredicted RBP11.54□□□□□ -0.56
BRCA1-208ENST00000468300 SLIT1O75093 1534 aa11.54□□□□□ -0.56
BRCA1-208ENST00000468300 ARHGAP23Q9P227 1491 aa11.54□□□□□ -0.56
BRCA1-208ENST00000468300 TMEM132EQ6IEE7 984 aa11.54□□□□□ -0.56
BRCA1-208ENST00000468300 TMEM2Q9UHN6 1383 aa11.53□□□□□ -0.56
BRCA1-208ENST00000468300 CEP170BQ9Y4F5 1589 aaPredicted RBP11.52□□□□□ -0.57
BRCA1-208ENST00000468300 PODXL2Q9NZ53 605 aa11.51□□□□□ -0.57
BRCA1-208ENST00000468300 SBNO2Q9Y2G9 1366 aa11.5□□□□□ -0.57
BRCA1-208ENST00000468300 MED14O60244 1454 aa11.5□□□□□ -0.57
BRCA1-208ENST00000468300 LTKP29376 864 aa11.5□□□□□ -0.57
BRCA1-208ENST00000468300 ADAMTS13Q76LX8 1427 aa11.49□□□□□ -0.57
BRCA1-208ENST00000468300 EIF3AQ14152 1382 aaKnown RBP11.49□□□□□ -0.57
BRCA1-208ENST00000468300 KNDC1Q76NI1 1749 aa11.49□□□□□ -0.57
BRCA1-208ENST00000468300 STAG3Q9UJ98 1225 aa11.49□□□□□ -0.57
BRCA1-208ENST00000468300 YTHDC2Q9H6S0 1430 aaKnown RBP11.49□□□□□ -0.57
BRCA1-208ENST00000468300 AMER1Q5JTC6 1135 aaPredicted RBP11.48□□□□□ -0.57
BRCA1-208ENST00000468300 SENP3Q9H4L4 574 aaPredicted RBP11.48□□□□□ -0.57
BRCA1-208ENST00000468300 TRAK1Q9UPV9 953 aa11.48□□□□□ -0.57
BRCA1-208ENST00000468300 TULP4Q9NRJ4 1543 aa11.48□□□□□ -0.57
BRCA1-208ENST00000468300 METP08581 1390 aa11.48□□□□□ -0.57
BRCA1-208ENST00000468300 DLC1Q96QB1 1528 aa11.47□□□□□ -0.57
BRCA1-208ENST00000468300 PLEKHG1Q9ULL1 1385 aa11.47□□□□□ -0.57
BRCA1-208ENST00000468300 PER1O15534 1290 aaPredicted RBP11.46□□□□□ -0.58
BRCA1-208ENST00000468300 TMF1P82094 1093 aa11.46□□□□□ -0.58
BRCA1-208ENST00000468300 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.46□□□□□ -0.58
BRCA1-208ENST00000468300 CENPJQ9HC77 1338 aaPredicted RBP11.45□□□□□ -0.58
BRCA1-208ENST00000468300 CPS1P31327 1500 aa11.44□□□□□ -0.58
BRCA1-208ENST00000468300 SETD1BQ9UPS6 1966 aaKnown RBP11.44□□□□□ -0.58
BRCA1-208ENST00000468300 LRPPRCP42704 1394 aaKnown RBP11.44□□□□□ -0.58
BRCA1-208ENST00000468300 TECPR2O15040 1411 aa11.44□□□□□ -0.58
BRCA1-208ENST00000468300 PTPRUQ92729 1446 aa11.43□□□□□ -0.58
BRCA1-208ENST00000468300 PRKRIP1Q9H875 184 aaPredicted RBP11.43□□□□□ -0.58
BRCA1-208ENST00000468300 ABCC11Q96J66 1382 aa11.43□□□□□ -0.58
BRCA1-208ENST00000468300 POLR3GLQ9BT43 218 aa11.42□□□□□ -0.58
BRCA1-208ENST00000468300 PLEKHH1Q9ULM0 1364 aa11.42□□□□□ -0.58
BRCA1-208ENST00000468300 ANP32CO43423 234 aa11.42□□□□□ -0.58
BRCA1-208ENST00000468300 STK26Q9P289 416 aa11.41□□□□□ -0.58
BRCA1-208ENST00000468300 DIP2AQ14689 1571 aa11.41□□□□□ -0.58
BRCA1-208ENST00000468300 TXNDC2Q86VQ3 553 aa11.41□□□□□ -0.58
BRCA1-208ENST00000468300 CCER2I3L3R5 266 aa11.41□□□□□ -0.58
BRCA1-208ENST00000468300 CCDC184Q52MB2 194 aa11.41□□□□□ -0.58
BRCA1-208ENST00000468300 XRN1Q8IZH2 1706 aaKnown RBP11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms