RNA–Protein interactions for RNA: ENST00000466100.1

VCP-204, Transcript of valosin containing protein, humanhuman

TSL 2

Gene VCP, Length 508 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-204ENST00000466100 RGL3Q3MIN7 710 aa16.14■□□□□ 0.17
VCP-204ENST00000466100 L3MBTL2Q969R5 705 aa16.14■□□□□ 0.17
VCP-204ENST00000466100 TIMELESSQ9UNS1 1208 aa16.14■□□□□ 0.17
VCP-204ENST00000466100 RPGRIP1LQ68CZ1 1315 aa16.13■□□□□ 0.17
VCP-204ENST00000466100 NRXN3Q9Y4C0 1643 aa16.12■□□□□ 0.17
VCP-204ENST00000466100 STAG3Q9UJ98 1225 aa16.12■□□□□ 0.17
VCP-204ENST00000466100 IQGAP1P46940 1657 aa16.11■□□□□ 0.17
VCP-204ENST00000466100 SETD1AO15047 1707 aaKnown RBP16.11■□□□□ 0.17
VCP-204ENST00000466100 THEMISQ8N1K5 641 aaPredicted RBP16.11■□□□□ 0.17
VCP-204ENST00000466100 STRCQ7RTU9 1775 aa16.1■□□□□ 0.17
VCP-204ENST00000466100 ZNF326Q5BKZ1 582 aaKnown RBP16.1■□□□□ 0.17
VCP-204ENST00000466100 KIAA1210Q9ULL0 1709 aa16.1■□□□□ 0.17
VCP-204ENST00000466100 PRAG1Q86YV5 1406 aa16.1■□□□□ 0.17
VCP-204ENST00000466100 SCAF11Q99590 1463 aaKnown RBP16.1■□□□□ 0.17
VCP-204ENST00000466100 SETBP1Q9Y6X0 1596 aa16.09■□□□□ 0.17
VCP-204ENST00000466100 TRPM1Q7Z4N2 1603 aa16.09■□□□□ 0.17
VCP-204ENST00000466100 PIK3C2GO75747 1445 aa16.09■□□□□ 0.17
VCP-204ENST00000466100 LAMC1P11047 1609 aa16.08■□□□□ 0.17
VCP-204ENST00000466100 DCAF11Q8TEB1 546 aa16.08■□□□□ 0.16
VCP-204ENST00000466100 LTKP29376 864 aa16.07■□□□□ 0.16
VCP-204ENST00000466100 STAC3Q96MF2 364 aa16.07■□□□□ 0.16
VCP-204ENST00000466100 ADGRF5Q8IZF2 1346 aa16.07■□□□□ 0.16
VCP-204ENST00000466100 MED14O60244 1454 aa16.06■□□□□ 0.16
VCP-204ENST00000466100 PLEKHG1Q9ULL1 1385 aa16.05■□□□□ 0.16
VCP-204ENST00000466100 PPP1R15AO75807 674 aaPredicted RBP16.05■□□□□ 0.16
VCP-204ENST00000466100 VGFO15240 615 aaPredicted RBP16.04■□□□□ 0.16
VCP-204ENST00000466100 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.04■□□□□ 0.16
VCP-204ENST00000466100 ASXL1Q8IXJ9 1541 aa16.04■□□□□ 0.16
VCP-204ENST00000466100 RALGAPBQ86X10 1494 aa16.03■□□□□ 0.16
VCP-204ENST00000466100 HSPA2P54652 639 aa16.03■□□□□ 0.16
VCP-204ENST00000466100 NBPF8Q3BBV2 869 aa16.03■□□□□ 0.16
VCP-204ENST00000466100 NUTM2DQ5VT03 806 aaPredicted RBP16.03■□□□□ 0.16
VCP-204ENST00000466100 KDM2AQ9Y2K7 1162 aa16.03■□□□□ 0.16
VCP-204ENST00000466100 ALKQ9UM73 1620 aa16.03■□□□□ 0.16
VCP-204ENST00000466100 DIP2AQ14689 1571 aa16.03■□□□□ 0.16
VCP-204ENST00000466100 ADAMTS13Q76LX8 1427 aa16.02■□□□□ 0.16
VCP-204ENST00000466100 ZEB1P37275 1124 aaPredicted RBP16.02■□□□□ 0.16
VCP-204ENST00000466100 TXNDC2Q86VQ3 553 aa16.02■□□□□ 0.16
VCP-204ENST00000466100 ADGRB1O14514 1584 aa16.01■□□□□ 0.15
VCP-204ENST00000466100 EID1Q9Y6B2 187 aa16.01■□□□□ 0.15
VCP-204ENST00000466100 HDGFP51858 240 aaKnown RBP16■□□□□ 0.15
VCP-204ENST00000466100 ANKLE2Q86XL3 938 aa16■□□□□ 0.15
VCP-204ENST00000466100 NPHP4O75161 1426 aaPredicted RBP16■□□□□ 0.15
VCP-204ENST00000466100 GPRASP1Q5JY77 1395 aa15.98■□□□□ 0.15
VCP-204ENST00000466100 NCKAP5LQ9HCH0 1330 aa15.97■□□□□ 0.15
VCP-204ENST00000466100 KNDC1Q76NI1 1749 aa15.97■□□□□ 0.15
VCP-204ENST00000466100 CHD2O14647 1828 aaKnown RBP15.96■□□□□ 0.15
VCP-204ENST00000466100 C14orf93Q9H972 538 aaKnown RBP15.96■□□□□ 0.15
VCP-204ENST00000466100 XRN1Q8IZH2 1706 aaKnown RBP15.95■□□□□ 0.14
VCP-204ENST00000466100 CFAP70Q5T0N1 1121 aa15.95■□□□□ 0.14
VCP-204ENST00000466100 ARHGEF28Q8N1W1 1705 aaKnown RBP15.94■□□□□ 0.14
VCP-204ENST00000466100 NWD1Q149M9 1564 aa15.93■□□□□ 0.14
VCP-204ENST00000466100 METP08581 1390 aa15.93■□□□□ 0.14
VCP-204ENST00000466100 NBPF1Q3BBV0 1214 aa15.92■□□□□ 0.14
VCP-204ENST00000466100 AEBP2Q6ZN18 517 aaPredicted RBP15.92■□□□□ 0.14
VCP-204ENST00000466100 SENP3Q9H4L4 574 aaPredicted RBP15.92■□□□□ 0.14
VCP-204ENST00000466100 STRCP1A6NGW2 1772 aa15.92■□□□□ 0.14
VCP-204ENST00000466100 ROCK2O75116 1388 aaKnown RBP15.91■□□□□ 0.14
VCP-204ENST00000466100 TBX22Q9Y458 520 aa15.91■□□□□ 0.14
VCP-204ENST00000466100 PTPRUQ92729 1446 aa15.91■□□□□ 0.14
VCP-204ENST00000466100 PIK3R4Q99570 1358 aa15.9■□□□□ 0.14
VCP-204ENST00000466100 CPS1P31327 1500 aa15.9■□□□□ 0.14
VCP-204ENST00000466100 SLC26A8Q96RN1 970 aa15.9■□□□□ 0.14
VCP-204ENST00000466100 TECPR2O15040 1411 aa15.89■□□□□ 0.13
VCP-204ENST00000466100 YTHDC2Q9H6S0 1430 aaKnown RBP15.89■□□□□ 0.13
VCP-204ENST00000466100 DLC1Q96QB1 1528 aa15.89■□□□□ 0.13
VCP-204ENST00000466100 LRPPRCP42704 1394 aaKnown RBP15.88■□□□□ 0.13
VCP-204ENST00000466100 TMEM132EQ6IEE7 984 aa15.87■□□□□ 0.13
VCP-204ENST00000466100 BCANQ96GW7 911 aa15.86■□□□□ 0.13
VCP-204ENST00000466100 QRICH2Q9H0J4 1663 aa15.85■□□□□ 0.13
VCP-204ENST00000466100 ABCC11Q96J66 1382 aa15.85■□□□□ 0.13
VCP-204ENST00000466100 PTCH1Q13635 1447 aa15.85■□□□□ 0.13
VCP-204ENST00000466100 CARD11Q9BXL7 1154 aa15.84■□□□□ 0.13
VCP-204ENST00000466100 USP47Q96K76 1375 aa15.83■□□□□ 0.12
VCP-204ENST00000466100 NKTRP30414 1462 aaKnown RBP15.83■□□□□ 0.12
VCP-204ENST00000466100 XIRP1Q702N8 1843 aaKnown RBP15.82■□□□□ 0.12
VCP-204ENST00000466100 FAM135BQ49AJ0 1406 aa15.81■□□□□ 0.12
VCP-204ENST00000466100 ROBO2Q9HCK4 1378 aa15.81■□□□□ 0.12
VCP-204ENST00000466100 DMRT2Q9Y5R5 561 aa15.81■□□□□ 0.12
VCP-204ENST00000466100 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.8■□□□□ 0.12
VCP-204ENST00000466100 KCNA6P17658 529 aa15.79■□□□□ 0.12
VCP-204ENST00000466100 AMOTL2Q9Y2J4 779 aa15.79■□□□□ 0.12
VCP-204ENST00000466100 NALCNQ8IZF0 1738 aa15.79■□□□□ 0.12
VCP-204ENST00000466100 EIF3AQ14152 1382 aaKnown RBP15.78■□□□□ 0.12
VCP-204ENST00000466100 SIRT1Q96EB6 747 aa15.78■□□□□ 0.12
VCP-204ENST00000466100 STK26Q9P289 416 aa15.78■□□□□ 0.12
VCP-204ENST00000466100 TRAK1Q9UPV9 953 aa15.78■□□□□ 0.12
VCP-204ENST00000466100 LTBP4Q8N2S1 1624 aa15.78■□□□□ 0.12
VCP-204ENST00000466100 ADGRB2O60241 1585 aa15.78■□□□□ 0.12
VCP-204ENST00000466100 PLEKHH1Q9ULM0 1364 aa15.77■□□□□ 0.12
VCP-204ENST00000466100 SBNO2Q9Y2G9 1366 aa15.76■□□□□ 0.11
VCP-204ENST00000466100 ZNF335Q9H4Z2 1342 aaPredicted RBP15.76■□□□□ 0.11
VCP-204ENST00000466100 HSPA5P11021 654 aaKnown RBP15.76■□□□□ 0.11
VCP-204ENST00000466100 EIF4G2P78344 907 aaKnown RBP eCLIP15.75■□□□□ 0.11
VCP-204ENST00000466100 CENPJQ9HC77 1338 aaPredicted RBP15.74■□□□□ 0.11
VCP-204ENST00000466100 PRAM1Q96QH2 718 aa15.74■□□□□ 0.11
VCP-204ENST00000466100 TESK2Q96S53 571 aa15.74■□□□□ 0.11
VCP-204ENST00000466100 LRRC7Q96NW7 1537 aa15.73■□□□□ 0.11
VCP-204ENST00000466100 TULP4Q9NRJ4 1543 aa15.73■□□□□ 0.11
VCP-204ENST00000466100 ST20-MTHFSA0A0A6YYL1 179 aa15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms