RNA–Protein interactions for RNA: ENST00000465727.5

SDF4-205, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,095 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-205ENST00000465727 UBE2Q2Q8WVN8 375 aa25.58■■□□□ 1.69
SDF4-205ENST00000465727 ATP10AO60312 1499 aa25.58■■□□□ 1.69
SDF4-205ENST00000465727 MAST1Q9Y2H9 1570 aa25.58■■□□□ 1.69
SDF4-205ENST00000465727 WDR7Q9Y4E6 1490 aa25.57■■□□□ 1.68
SDF4-205ENST00000465727 PIK3C2GO75747 1445 aa25.56■■□□□ 1.68
SDF4-205ENST00000465727 SAMD9LQ8IVG5 1584 aa25.56■■□□□ 1.68
SDF4-205ENST00000465727 PPP2R1AP30153 589 aa25.56■■□□□ 1.68
SDF4-205ENST00000465727 RSPH6AQ9H0K4 717 aa25.56■■□□□ 1.68
SDF4-205ENST00000465727 SYNMO15061 1565 aa25.56■■□□□ 1.68
SDF4-205ENST00000465727 PREX2Q70Z35 1606 aa25.56■■□□□ 1.68
SDF4-205ENST00000465727 SLFN5Q08AF3 891 aa25.56■■□□□ 1.68
SDF4-205ENST00000465727 RGL3Q3MIN7 710 aa25.55■■□□□ 1.68
SDF4-205ENST00000465727 TRMT2AQ8IZ69 625 aaKnown RBP25.55■■□□□ 1.68
SDF4-205ENST00000465727 HNRNPMP52272 730 aaKnown RBP eCLIP25.54■■□□□ 1.689e-7■■□□□ 13.3
SDF4-205ENST00000465727 MAGI2Q86UL8 1455 aa25.54■■□□□ 1.68
SDF4-205ENST00000465727 ABCC2Q92887 1545 aa25.53■■□□□ 1.68
SDF4-205ENST00000465727 NKTRP30414 1462 aaKnown RBP25.53■■□□□ 1.68
SDF4-205ENST00000465727 KNSTRNQ9Y448 316 aa25.53■■□□□ 1.68
SDF4-205ENST00000465727 CDC42BPBQ9Y5S2 1711 aa25.52■■□□□ 1.68
SDF4-205ENST00000465727 RGS3P49796 1198 aa25.52■■□□□ 1.68
SDF4-205ENST00000465727 IQGAP1P46940 1657 aa25.5■■□□□ 1.67
SDF4-205ENST00000465727 NPC1L1Q9UHC9 1359 aa25.5■■□□□ 1.67
SDF4-205ENST00000465727 NINLQ9Y2I6 1382 aa25.5■■□□□ 1.67
SDF4-205ENST00000465727 ASXL1Q8IXJ9 1541 aa25.49■■□□□ 1.67
SDF4-205ENST00000465727 PLXNC1O60486 1568 aa25.49■■□□□ 1.67
SDF4-205ENST00000465727 CDCA8Q53HL2 280 aa25.49■■□□□ 1.67
SDF4-205ENST00000465727 MAPK8IP3Q9UPT6 1336 aa25.48■■□□□ 1.67
SDF4-205ENST00000465727 AMER1Q5JTC6 1135 aaPredicted RBP25.48■■□□□ 1.67
SDF4-205ENST00000465727 NGEFQ8N5V2 710 aa25.48■■□□□ 1.67
SDF4-205ENST00000465727 BECN1Q14457 450 aa25.48■■□□□ 1.67
SDF4-205ENST00000465727 JPH4Q96JJ6 628 aa25.47■■□□□ 1.67
SDF4-205ENST00000465727 CGNL1Q0VF96 1302 aa25.45■■□□□ 1.67
SDF4-205ENST00000465727 USP19O94966 1318 aa25.45■■□□□ 1.66
SDF4-205ENST00000465727 CYB5RLQ6IPT4 315 aa25.43■■□□□ 1.66
SDF4-205ENST00000465727 ZMYM3Q14202 1370 aa25.43■■□□□ 1.66
SDF4-205ENST00000465727 E9PSI1 815 aa25.43■■□□□ 1.66
SDF4-205ENST00000465727 PDE3AQ14432 1141 aa25.43■■□□□ 1.66
SDF4-205ENST00000465727 L1TD1Q5T7N2 865 aaKnown RBP25.42■■□□□ 1.66
SDF4-205ENST00000465727 MADDQ8WXG6 1647 aa25.42■■□□□ 1.66
SDF4-205ENST00000465727 EIF5BO60841 1220 aaKnown RBP25.41■■□□□ 1.66
SDF4-205ENST00000465727 SYCP2Q9BX26 1530 aa25.4■■□□□ 1.66
SDF4-205ENST00000465727 MYOM1P52179 1685 aa25.39■■□□□ 1.65
SDF4-205ENST00000465727 DUOX2Q9NRD8 1548 aa25.38■■□□□ 1.65
SDF4-205ENST00000465727 AAMPQ13685 434 aa25.38■■□□□ 1.65
SDF4-205ENST00000465727 ERCC6L2Q5T890 1561 aa25.37■■□□□ 1.65
SDF4-205ENST00000465727 NLRP1Q9C000 1473 aa25.37■■□□□ 1.65
SDF4-205ENST00000465727 STAC3Q96MF2 364 aa25.36■■□□□ 1.65
SDF4-205ENST00000465727 SHROOM2Q13796 1616 aa25.36■■□□□ 1.65
SDF4-205ENST00000465727 SCAF11Q99590 1463 aaKnown RBP25.36■■□□□ 1.65
SDF4-205ENST00000465727 SCAPERQ9BY12 1400 aa25.36■■□□□ 1.65
SDF4-205ENST00000465727 IGHDP01880 384 aa25.35■■□□□ 1.65
SDF4-205ENST00000465727 CLUAP1Q96AJ1 413 aa25.35■■□□□ 1.65
SDF4-205ENST00000465727 SPHKAPQ2M3C7 1700 aa25.34■■□□□ 1.65
SDF4-205ENST00000465727 BCAR3O75815 825 aa25.34■■□□□ 1.65
SDF4-205ENST00000465727 POGKQ9P215 609 aa25.33■■□□□ 1.65
SDF4-205ENST00000465727 KDM5AP29375 1690 aaKnown RBP25.32■■□□□ 1.64
SDF4-205ENST00000465727 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.32■■□□□ 1.646e-9■■□□□ 12.6
SDF4-205ENST00000465727 APAF1O14727 1248 aa25.32■■□□□ 1.64
SDF4-205ENST00000465727 SPINK5Q9NQ38 1064 aaPredicted RBP25.32■■□□□ 1.64
SDF4-205ENST00000465727 UPF2Q9HAU5 1272 aaKnown RBP25.31■■□□□ 1.64
SDF4-205ENST00000465727 ANTXR1Q9H6X2 564 aa25.3■■□□□ 1.64
SDF4-205ENST00000465727 ARHGAP5Q13017 1502 aa25.3■■□□□ 1.64
SDF4-205ENST00000465727 CCDC146Q8IYE0 955 aa25.29■■□□□ 1.64
SDF4-205ENST00000465727 TTC37Q6PGP7 1564 aa25.28■■□□□ 1.64
SDF4-205ENST00000465727 CENPJQ9HC77 1338 aaPredicted RBP25.28■■□□□ 1.64
SDF4-205ENST00000465727 SLC24A1O60721 1099 aa25.28■■□□□ 1.64
SDF4-205ENST00000465727 KIAA1210Q9ULL0 1709 aa25.27■■□□□ 1.64
SDF4-205ENST00000465727 PMFBP1Q8TBY8 1022 aa25.27■■□□□ 1.64
SDF4-205ENST00000465727 CEP152O94986 1710 aa25.27■■□□□ 1.64
SDF4-205ENST00000465727 SEC24BO95487 1268 aa25.27■■□□□ 1.64
SDF4-205ENST00000465727 TBC1D32Q96NH3 1257 aa25.24■■□□□ 1.63
SDF4-205ENST00000465727 TRPM2O94759 1503 aa25.24■■□□□ 1.63
SDF4-205ENST00000465727 CANXP27824 592 aaKnown RBP25.24■■□□□ 1.63
SDF4-205ENST00000465727 SLKQ9H2G2 1235 aaPredicted RBP25.24■■□□□ 1.63
SDF4-205ENST00000465727 COG6Q9Y2V7 657 aa25.2■■□□□ 1.62
SDF4-205ENST00000465727 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.2■■□□□ 1.623e-6■■■□□ 17.3
SDF4-205ENST00000465727 POLR3AO14802 1390 aaPredicted RBP25.19■■□□□ 1.62
SDF4-205ENST00000465727 RRAGDQ9NQL2 400 aaPredicted RBP25.19■■□□□ 1.62
SDF4-205ENST00000465727 WWC1Q8IX03 1113 aa25.17■■□□□ 1.62
SDF4-205ENST00000465727 PANK1Q8TE04 598 aa25.17■■□□□ 1.62
SDF4-205ENST00000465727 TBC1D2Q9BYX2 928 aa25.17■■□□□ 1.62
SDF4-205ENST00000465727 FSD2A1L4K1 749 aa25.16■■□□□ 1.62
SDF4-205ENST00000465727 NEURL4Q96JN8 1562 aa25.16■■□□□ 1.62
SDF4-205ENST00000465727 GOLGA6L3A6NEY3 463 aa25.16■■□□□ 1.62
SDF4-205ENST00000465727 DMRT2Q9Y5R5 561 aa25.16■■□□□ 1.62
SDF4-205ENST00000465727 PTPRTO14522 1441 aa25.14■■□□□ 1.62
SDF4-205ENST00000465727 CLTCL1P53675 1640 aa25.11■■□□□ 1.61
SDF4-205ENST00000465727 MCM4P33991 863 aa25.11■■□□□ 1.61
SDF4-205ENST00000465727 RARSP54136 660 aaKnown RBP25.11■■□□□ 1.61
SDF4-205ENST00000465727 RWDD1Q9H446 243 aaPredicted RBP25.11■■□□□ 1.61
SDF4-205ENST00000465727 ERVK-7P63135 1459 aa25.11■■□□□ 1.61
SDF4-205ENST00000465727 SHPRHQ149N8 1683 aa25.1■■□□□ 1.61
SDF4-205ENST00000465727 XRCC6P12956 609 aaKnown RBP eCLIP25.1■■□□□ 1.61
SDF4-205ENST00000465727 CLCN1P35523 988 aa25.09■■□□□ 1.61
SDF4-205ENST00000465727 PDZRN3Q9UPQ7 1066 aa25.09■■□□□ 1.61
SDF4-205ENST00000465727 IQSEC2Q5JU85 1478 aa25.09■■□□□ 1.61
SDF4-205ENST00000465727 PCDHB15Q9Y5E8 787 aa25.08■■□□□ 1.6
SDF4-205ENST00000465727 WDR63Q8IWG1 891 aa25.07■■□□□ 1.6
SDF4-205ENST00000465727 CHMP5Q9NZZ3 219 aa25.07■■□□□ 1.6
SDF4-205ENST00000465727 ISY1Q9ULR0 285 aaKnown RBP25.07■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms