RNA–Protein interactions for RNA: ENST00000463315.1

SEMA3D-203, Transcript of semaphorin 3D, humanhuman

TSL 2

Gene SEMA3D, Length 1,257 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3D-203ENST00000463315 HDGFP51858 240 aaKnown RBP20.34■□□□□ 0.85
SEMA3D-203ENST00000463315 SCAF11Q99590 1463 aaKnown RBP20.33■□□□□ 0.85
SEMA3D-203ENST00000463315 TMEM131LA2VDJ0 1609 aa20.33■□□□□ 0.84
SEMA3D-203ENST00000463315 NEURL4Q96JN8 1562 aa20.33■□□□□ 0.84
SEMA3D-203ENST00000463315 TXNDC2Q86VQ3 553 aa20.31■□□□□ 0.84
SEMA3D-203ENST00000463315 NPHP4O75161 1426 aaPredicted RBP20.3■□□□□ 0.84
SEMA3D-203ENST00000463315 NPM3O75607 178 aaKnown RBP20.3■□□□□ 0.84
SEMA3D-203ENST00000463315 LTKP29376 864 aa20.29■□□□□ 0.84
SEMA3D-203ENST00000463315 TRIM26Q12899 539 aaPredicted RBP20.29■□□□□ 0.84
SEMA3D-203ENST00000463315 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.29■□□□□ 0.84
SEMA3D-203ENST00000463315 ZFYVE9O95405 1425 aa20.27■□□□□ 0.84
SEMA3D-203ENST00000463315 KCNA4P22459 653 aa20.27■□□□□ 0.84
SEMA3D-203ENST00000463315 IQGAP1P46940 1657 aa20.26■□□□□ 0.83
SEMA3D-203ENST00000463315 CLTCL1P53675 1640 aa20.25■□□□□ 0.83
SEMA3D-203ENST00000463315 RIMS2Q9UQ26 1411 aa20.25■□□□□ 0.83
SEMA3D-203ENST00000463315 CHGAP10645 457 aaKnown RBP20.24■□□□□ 0.83
SEMA3D-203ENST00000463315 CCDC144AA2RUR9 1427 aa20.23■□□□□ 0.83
SEMA3D-203ENST00000463315 PLEKHG1Q9ULL1 1385 aa20.21■□□□□ 0.83
SEMA3D-203ENST00000463315 MYO5BQ9ULV0 1848 aa20.21■□□□□ 0.83
SEMA3D-203ENST00000463315 RPGRIP1LQ68CZ1 1315 aa20.21■□□□□ 0.83
SEMA3D-203ENST00000463315 KIF1BO60333 1816 aa20.2■□□□□ 0.82
SEMA3D-203ENST00000463315 LTBP4Q8N2S1 1624 aa20.2■□□□□ 0.82
SEMA3D-203ENST00000463315 PPP1R15AO75807 674 aaPredicted RBP20.19■□□□□ 0.82
SEMA3D-203ENST00000463315 CERKQ8TCT0 537 aa20.17■□□□□ 0.82
SEMA3D-203ENST00000463315 ZNF335Q9H4Z2 1342 aaPredicted RBP20.17■□□□□ 0.82
SEMA3D-203ENST00000463315 ANKRD30BQ9BXX2 1392 aa20.17■□□□□ 0.82
SEMA3D-203ENST00000463315 IQSEC2Q5JU85 1478 aa20.17■□□□□ 0.82
SEMA3D-203ENST00000463315 ZNF326Q5BKZ1 582 aaKnown RBP20.16■□□□□ 0.82
SEMA3D-203ENST00000463315 CPS1P31327 1500 aa20.16■□□□□ 0.82
SEMA3D-203ENST00000463315 SPATA31E1Q6ZUB1 1445 aa20.14■□□□□ 0.81
SEMA3D-203ENST00000463315 VGFO15240 615 aaPredicted RBP20.14■□□□□ 0.81
SEMA3D-203ENST00000463315 TBX22Q9Y458 520 aa20.14■□□□□ 0.81
SEMA3D-203ENST00000463315 NEXMIFQ5QGS0 1516 aa20.13■□□□□ 0.81
SEMA3D-203ENST00000463315 DIP2AQ14689 1571 aa20.12■□□□□ 0.81
SEMA3D-203ENST00000463315 PIK3R4Q99570 1358 aa20.1■□□□□ 0.81
SEMA3D-203ENST00000463315 BCANQ96GW7 911 aa20.1■□□□□ 0.81
SEMA3D-203ENST00000463315 SETBP1Q9Y6X0 1596 aa20.09■□□□□ 0.81
SEMA3D-203ENST00000463315 SLC26A8Q96RN1 970 aa20.09■□□□□ 0.81
SEMA3D-203ENST00000463315 ADAMTS13Q76LX8 1427 aa20.09■□□□□ 0.81
SEMA3D-203ENST00000463315 KCNA6P17658 529 aa20.08■□□□□ 0.81
SEMA3D-203ENST00000463315 STAC3Q96MF2 364 aa20.07■□□□□ 0.8
SEMA3D-203ENST00000463315 NUTM2DQ5VT03 806 aaPredicted RBP20.06■□□□□ 0.8
SEMA3D-203ENST00000463315 FBXO41Q8TF61 875 aa20.05■□□□□ 0.8
SEMA3D-203ENST00000463315 PPLO60437 1756 aa20.05■□□□□ 0.8
SEMA3D-203ENST00000463315 NKTRP30414 1462 aaKnown RBP20.04■□□□□ 0.8
SEMA3D-203ENST00000463315 NWD1Q149M9 1564 aa20.04■□□□□ 0.8
SEMA3D-203ENST00000463315 RGL3Q3MIN7 710 aa20.03■□□□□ 0.8
SEMA3D-203ENST00000463315 NRXN3Q9Y4C0 1643 aa20.02■□□□□ 0.8
SEMA3D-203ENST00000463315 LRRC7Q96NW7 1537 aa20.02■□□□□ 0.79
SEMA3D-203ENST00000463315 STRCP1A6NGW2 1772 aa20.01■□□□□ 0.79
SEMA3D-203ENST00000463315 CHD2O14647 1828 aaKnown RBP20■□□□□ 0.79
SEMA3D-203ENST00000463315 IFT172Q9UG01 1749 aa20■□□□□ 0.79
SEMA3D-203ENST00000463315 MYOM2P54296 1465 aa19.99■□□□□ 0.79
SEMA3D-203ENST00000463315 NCOA3Q9Y6Q9 1424 aa19.98■□□□□ 0.79
SEMA3D-203ENST00000463315 DHX57Q6P158 1386 aaKnown RBP19.97■□□□□ 0.79
SEMA3D-203ENST00000463315 NRXN1Q9ULB1 1477 aa19.97■□□□□ 0.79
SEMA3D-203ENST00000463315 ADGRF5Q8IZF2 1346 aa19.96■□□□□ 0.79
SEMA3D-203ENST00000463315 ALKQ9UM73 1620 aa19.95■□□□□ 0.78
SEMA3D-203ENST00000463315 PIK3C2GO75747 1445 aa19.95■□□□□ 0.78
SEMA3D-203ENST00000463315 METP08581 1390 aa19.95■□□□□ 0.78
SEMA3D-203ENST00000463315 PROSER2Q86WR7 435 aaPredicted RBP19.94■□□□□ 0.78
SEMA3D-203ENST00000463315 AMOTL2Q9Y2J4 779 aa19.94■□□□□ 0.78
SEMA3D-203ENST00000463315 PRAG1Q86YV5 1406 aa19.93■□□□□ 0.78
SEMA3D-203ENST00000463315 TOM1O60784 492 aa19.92■□□□□ 0.78
SEMA3D-203ENST00000463315 TMEM94Q12767 1356 aa19.92■□□□□ 0.78
SEMA3D-203ENST00000463315 PTPRUQ92729 1446 aa19.92■□□□□ 0.78
SEMA3D-203ENST00000463315 SETD1AO15047 1707 aaKnown RBP19.91■□□□□ 0.78
SEMA3D-203ENST00000463315 XRN1Q8IZH2 1706 aaKnown RBP19.9■□□□□ 0.78
SEMA3D-203ENST00000463315 ILDR1Q86SU0 546 aaPredicted RBP19.9■□□□□ 0.78
SEMA3D-203ENST00000463315 DCAF11Q8TEB1 546 aa19.9■□□□□ 0.78
SEMA3D-203ENST00000463315 C14orf93Q9H972 538 aaKnown RBP19.9■□□□□ 0.78
SEMA3D-203ENST00000463315 LAMC1P11047 1609 aa19.88■□□□□ 0.77
SEMA3D-203ENST00000463315 UBAP1LF5GYI3 381 aa19.88■□□□□ 0.77
SEMA3D-203ENST00000463315 PCGF6Q9BYE7 350 aa19.88■□□□□ 0.77
SEMA3D-203ENST00000463315 PTCH1Q13635 1447 aa19.87■□□□□ 0.77
SEMA3D-203ENST00000463315 XIRP1Q702N8 1843 aaKnown RBP19.87■□□□□ 0.77
SEMA3D-203ENST00000463315 MSH6P52701 1360 aa19.85■□□□□ 0.77
SEMA3D-203ENST00000463315 TECPR2O15040 1411 aa19.85■□□□□ 0.77
SEMA3D-203ENST00000463315 ABCC11Q96J66 1382 aa19.84■□□□□ 0.77
SEMA3D-203ENST00000463315 C19orf44Q9H6X5 657 aa19.84■□□□□ 0.77
SEMA3D-203ENST00000463315 LRPPRCP42704 1394 aaKnown RBP19.83■□□□□ 0.77
SEMA3D-203ENST00000463315 KDM2AQ9Y2K7 1162 aa19.83■□□□□ 0.77
SEMA3D-203ENST00000463315 CLSPNQ9HAW4 1339 aa19.82■□□□□ 0.76
SEMA3D-203ENST00000463315 SIRT1Q96EB6 747 aa19.82■□□□□ 0.76
SEMA3D-203ENST00000463315 DCCP43146 1447 aa19.82■□□□□ 0.76
SEMA3D-203ENST00000463315 CFAP70Q5T0N1 1121 aa19.81■□□□□ 0.76
SEMA3D-203ENST00000463315 SIN3AQ96ST3 1273 aa19.81■□□□□ 0.76
SEMA3D-203ENST00000463315 CADPS2Q86UW7 1296 aa19.8■□□□□ 0.76
SEMA3D-203ENST00000463315 YTHDC2Q9H6S0 1430 aaKnown RBP19.79■□□□□ 0.76
SEMA3D-203ENST00000463315 ASXL1Q8IXJ9 1541 aa19.79■□□□□ 0.76
SEMA3D-203ENST00000463315 C14orf37Q86TY3 774 aa19.78■□□□□ 0.76
SEMA3D-203ENST00000463315 L3MBTL2Q969R5 705 aa19.78■□□□□ 0.76
SEMA3D-203ENST00000463315 RBM33Q96EV2 1170 aaKnown RBP19.78■□□□□ 0.76
SEMA3D-203ENST00000463315 ROBO2Q9HCK4 1378 aa19.78■□□□□ 0.76
SEMA3D-203ENST00000463315 FAM135BQ49AJ0 1406 aa19.77■□□□□ 0.76
SEMA3D-203ENST00000463315 KNDC1Q76NI1 1749 aa19.77■□□□□ 0.76
SEMA3D-203ENST00000463315 NEUROD1Q13562 356 aa19.77■□□□□ 0.76
SEMA3D-203ENST00000463315 TMEM132EQ6IEE7 984 aa19.77■□□□□ 0.76
SEMA3D-203ENST00000463315 ADGRB1O14514 1584 aa19.77■□□□□ 0.76
SEMA3D-203ENST00000463315 ADGRL3Q9HAR2 1447 aa19.76■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms