RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 MROH2AA6NES4 1674 aa16.58■□□□□ 0.25
HDAC4-208ENST00000463007 ZNF518AQ6AHZ1 1483 aa16.58■□□□□ 0.25
HDAC4-208ENST00000463007 NEFMP07197 916 aa16.58■□□□□ 0.24
HDAC4-208ENST00000463007 PER1O15534 1290 aaPredicted RBP16.58■□□□□ 0.24
HDAC4-208ENST00000463007 RGL3Q3MIN7 710 aa16.58■□□□□ 0.24
HDAC4-208ENST00000463007 MYOM1P52179 1685 aa16.57■□□□□ 0.24
HDAC4-208ENST00000463007 PNISRQ8TF01 805 aaKnown RBP16.57■□□□□ 0.24
HDAC4-208ENST00000463007 SLC4A3P48751 1232 aa16.57■□□□□ 0.24
HDAC4-208ENST00000463007 CDCA7LQ96GN5 454 aa16.57■□□□□ 0.24
HDAC4-208ENST00000463007 BRD4O60885 1362 aaPredicted RBP16.56■□□□□ 0.24
HDAC4-208ENST00000463007 MYOM2P54296 1465 aa16.56■□□□□ 0.24
HDAC4-208ENST00000463007 MAP3K4Q9Y6R4 1608 aa16.56■□□□□ 0.24
HDAC4-208ENST00000463007 SMG6Q86US8 1419 aaKnown RBP16.56■□□□□ 0.24
HDAC4-208ENST00000463007 POGZQ7Z3K3 1410 aa16.55■□□□□ 0.24
HDAC4-208ENST00000463007 MYT1LQ9UL68 1186 aa16.55■□□□□ 0.24
HDAC4-208ENST00000463007 NRXN1Q9ULB1 1477 aa16.55■□□□□ 0.24
HDAC4-208ENST00000463007 CC2D1BQ5T0F9 858 aaKnown RBP16.55■□□□□ 0.24
HDAC4-208ENST00000463007 ABCA6Q8N139 1617 aa16.55■□□□□ 0.24
HDAC4-208ENST00000463007 KIF1BO60333 1816 aa16.54■□□□□ 0.24
HDAC4-208ENST00000463007 MLH3Q9UHC1 1453 aa16.54■□□□□ 0.24
HDAC4-208ENST00000463007 UGGT1Q9NYU2 1555 aa16.54■□□□□ 0.24
HDAC4-208ENST00000463007 HECW2Q9P2P5 1572 aa16.54■□□□□ 0.24
HDAC4-208ENST00000463007 ZMYM4Q5VZL5 1548 aa16.53■□□□□ 0.24
HDAC4-208ENST00000463007 MYBBP1AQ9BQG0 1328 aaKnown RBP16.53■□□□□ 0.24
HDAC4-208ENST00000463007 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.52■□□□□ 0.24
HDAC4-208ENST00000463007 SYNMO15061 1565 aa16.52■□□□□ 0.24
HDAC4-208ENST00000463007 RALBP1Q15311 655 aa16.52■□□□□ 0.24
HDAC4-208ENST00000463007 STAC3Q96MF2 364 aa16.52■□□□□ 0.24
HDAC4-208ENST00000463007 RCAN3Q9UKA8 241 aa16.52■□□□□ 0.24
HDAC4-208ENST00000463007 MYO3AQ8NEV4 1616 aa16.52■□□□□ 0.24
HDAC4-208ENST00000463007 ADGRB3O60242 1522 aa16.52■□□□□ 0.23
HDAC4-208ENST00000463007 SCAF11Q99590 1463 aaKnown RBP16.51■□□□□ 0.23
HDAC4-208ENST00000463007 PDE4AP27815 886 aa16.51■□□□□ 0.23
HDAC4-208ENST00000463007 RNF123Q5XPI4 1314 aa16.5■□□□□ 0.23
HDAC4-208ENST00000463007 RRP1P56182 461 aaKnown RBP16.5■□□□□ 0.23
HDAC4-208ENST00000463007 WASHC2CQ9Y4E1 1318 aa16.5■□□□□ 0.23
HDAC4-208ENST00000463007 KANK1Q14678 1352 aa16.49■□□□□ 0.23
HDAC4-208ENST00000463007 INSRP06213 1382 aa16.48■□□□□ 0.23
HDAC4-208ENST00000463007 OSCARQ8IYS5 282 aa16.48■□□□□ 0.23
HDAC4-208ENST00000463007 PPLO60437 1756 aa16.48■□□□□ 0.23
HDAC4-208ENST00000463007 RICTORQ6R327 1708 aa16.48■□□□□ 0.23
HDAC4-208ENST00000463007 CD109Q6YHK3 1445 aa16.47■□□□□ 0.23
HDAC4-208ENST00000463007 SIGLEC1Q9BZZ2 1709 aa16.47■□□□□ 0.23
HDAC4-208ENST00000463007 NEO1Q92859 1461 aa16.46■□□□□ 0.23
HDAC4-208ENST00000463007 PIK3C2BO00750 1634 aa16.46■□□□□ 0.23
HDAC4-208ENST00000463007 KIF3BO15066 747 aa16.45■□□□□ 0.22
HDAC4-208ENST00000463007 SETBP1Q9Y6X0 1596 aa16.45■□□□□ 0.22
HDAC4-208ENST00000463007 ZC3H13Q5T200 1668 aaKnown RBP16.45■□□□□ 0.22
HDAC4-208ENST00000463007 ABCC3O15438 1527 aa16.44■□□□□ 0.22
HDAC4-208ENST00000463007 DIP2CQ9Y2E4 1556 aa16.44■□□□□ 0.22
HDAC4-208ENST00000463007 CAMSAP1Q5T5Y3 1602 aa16.44■□□□□ 0.22
HDAC4-208ENST00000463007 BLMP54132 1417 aaPredicted RBP16.43■□□□□ 0.22
HDAC4-208ENST00000463007 NPATQ14207 1427 aa16.43■□□□□ 0.22
HDAC4-208ENST00000463007 KDM5AP29375 1690 aaKnown RBP16.43■□□□□ 0.22
HDAC4-208ENST00000463007 NLRP13Q86W25 1043 aa16.42■□□□□ 0.22
HDAC4-208ENST00000463007 DAXXQ9UER7 740 aaPredicted RBP16.42■□□□□ 0.22
HDAC4-208ENST00000463007 TMF1P82094 1093 aa16.42■□□□□ 0.22
HDAC4-208ENST00000463007 CRBNQ96SW2 442 aa16.42■□□□□ 0.22
HDAC4-208ENST00000463007 GLI2P10070 1586 aa16.4■□□□□ 0.22
HDAC4-208ENST00000463007 RGS3P49796 1198 aa16.4■□□□□ 0.22
HDAC4-208ENST00000463007 C20orf194Q5TEA3 1177 aa16.4■□□□□ 0.22
HDAC4-208ENST00000463007 ADGRB1O14514 1584 aa16.4■□□□□ 0.22
HDAC4-208ENST00000463007 ERVK-7P63135 1459 aa16.39■□□□□ 0.22
HDAC4-208ENST00000463007 PANK3Q9H999 370 aa16.39■□□□□ 0.21
HDAC4-208ENST00000463007 NOS1P29475 1434 aa16.38■□□□□ 0.21
HDAC4-208ENST00000463007 TCERG1O14776 1098 aaKnown RBP16.38■□□□□ 0.21
HDAC4-208ENST00000463007 PIK3C2GO75747 1445 aa16.38■□□□□ 0.21
HDAC4-208ENST00000463007 BACH2Q9BYV9 841 aa16.38■□□□□ 0.21
HDAC4-208ENST00000463007 NPC1L1Q9UHC9 1359 aa16.37■□□□□ 0.21
HDAC4-208ENST00000463007 SBNO2Q9Y2G9 1366 aa16.37■□□□□ 0.21
HDAC4-208ENST00000463007 BRPF3Q9ULD4 1205 aa16.37■□□□□ 0.21
HDAC4-208ENST00000463007 ADGRF5Q8IZF2 1346 aa16.36■□□□□ 0.21
HDAC4-208ENST00000463007 ASXL1Q8IXJ9 1541 aa16.36■□□□□ 0.21
HDAC4-208ENST00000463007 EIF3AQ14152 1382 aaKnown RBP16.35■□□□□ 0.21
HDAC4-208ENST00000463007 AMER1Q5JTC6 1135 aaPredicted RBP16.34■□□□□ 0.21
HDAC4-208ENST00000463007 EIF5BO60841 1220 aaKnown RBP16.34■□□□□ 0.21
HDAC4-208ENST00000463007 ARXQ96QS3 562 aa16.34■□□□□ 0.21
HDAC4-208ENST00000463007 ARHGAP31Q2M1Z3 1444 aa16.33■□□□□ 0.21
HDAC4-208ENST00000463007 NEXMIFQ5QGS0 1516 aa16.33■□□□□ 0.2
HDAC4-208ENST00000463007 QRICH2Q9H0J4 1663 aa16.33■□□□□ 0.2
HDAC4-208ENST00000463007 NPM1P06748 294 aaKnown RBP eCLIP16.32■□□□□ 0.2
HDAC4-208ENST00000463007 CFAP65Q6ZU64 1925 aaKnown RBP16.3■□□□□ 0.2
HDAC4-208ENST00000463007 CFAP70Q5T0N1 1121 aa16.3■□□□□ 0.2
HDAC4-208ENST00000463007 ARHGEF28Q8N1W1 1705 aaKnown RBP16.3■□□□□ 0.2
HDAC4-208ENST00000463007 USP32Q8NFA0 1604 aa16.29■□□□□ 0.2
HDAC4-208ENST00000463007 CCDC146Q8IYE0 955 aa16.28■□□□□ 0.2
HDAC4-208ENST00000463007 CDCA8Q53HL2 280 aa16.28■□□□□ 0.2
HDAC4-208ENST00000463007 ADAMTS8Q9UP79 889 aa16.28■□□□□ 0.2
HDAC4-208ENST00000463007 PREX1Q8TCU6 1659 aa16.27■□□□□ 0.2
HDAC4-208ENST00000463007 DIP2BQ9P265 1576 aa16.27■□□□□ 0.2
HDAC4-208ENST00000463007 NFKBIBQ15653 356 aa16.26■□□□□ 0.19
HDAC4-208ENST00000463007 MYO5BQ9ULV0 1848 aa16.26■□□□□ 0.19
HDAC4-208ENST00000463007 REREQ9P2R6 1566 aa16.26■□□□□ 0.19
HDAC4-208ENST00000463007 YEATS2Q9ULM3 1422 aa16.26■□□□□ 0.19
HDAC4-208ENST00000463007 RIMBP3CA6NJZ7 1639 aa16.26■□□□□ 0.19
HDAC4-208ENST00000463007 RIMBP3BA6NNM3 1639 aa16.26■□□□□ 0.19
HDAC4-208ENST00000463007 RIMBP3Q9UFD9 1639 aa16.26■□□□□ 0.19
HDAC4-208ENST00000463007 PPM1GO15355 546 aaPredicted RBP16.26■□□□□ 0.19
HDAC4-208ENST00000463007 PDE3BQ13370 1112 aa16.25■□□□□ 0.19
HDAC4-208ENST00000463007 TMEM131LA2VDJ0 1609 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms