RNA–Protein interactions for RNA: ENST00000460912.6

SYNE1-215, Transcript of spectrin repeat containing nuclear envelope protein 1, human

TSL 1 (best)

Gene SYNE1, Length 3,664 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE1-215	ENST00000460912	ANP32C	O43423	234 aa		12.32	□□□□□ -0.44
SYNE1-215	ENST00000460912	KNDC1	Q76NI1	1749 aa		12.31	□□□□□ -0.44
SYNE1-215	ENST00000460912	SETBP1	Q9Y6X0	1596 aa		12.31	□□□□□ -0.44
SYNE1-215	ENST00000460912	TSHZ2	Q9NRE2	1034 aa		12.31	□□□□□ -0.44
SYNE1-215	ENST00000460912	USP47	Q96K76	1375 aa		12.31	□□□□□ -0.44
SYNE1-215	ENST00000460912	SLC4A1AP	Q9BWU0	796 aa	Known RBP	12.3	□□□□□ -0.44
SYNE1-215	ENST00000460912	LRPPRC	P42704	1394 aa	Known RBP	12.29	□□□□□ -0.44
SYNE1-215	ENST00000460912	PPP6R1	Q9UPN7	881 aa		12.29	□□□□□ -0.44
SYNE1-215	ENST00000460912	NUP155	O75694	1391 aa		12.28	□□□□□ -0.44
SYNE1-215	ENST00000460912	TRIM52	Q96A61	297 aa		12.28	□□□□□ -0.44
SYNE1-215	ENST00000460912	RNF123	Q5XPI4	1314 aa		12.28	□□□□□ -0.44
SYNE1-215	ENST00000460912	PKD2	Q13563	968 aa		12.27	□□□□□ -0.45
SYNE1-215	ENST00000460912	ADGRB1	O14514	1584 aa		12.27	□□□□□ -0.45
SYNE1-215	ENST00000460912	ASXL1	Q8IXJ9	1541 aa		12.26	□□□□□ -0.45
SYNE1-215	ENST00000460912	CFAP65	Q6ZU64	1925 aa	Known RBP	12.26	□□□□□ -0.45
SYNE1-215	ENST00000460912	ARHGEF28	Q8N1W1	1705 aa	Known RBP	12.25	□□□□□ -0.45
SYNE1-215	ENST00000460912	SLIT1	O75093	1534 aa		12.25	□□□□□ -0.45
SYNE1-215	ENST00000460912	ZFYVE9	O95405	1425 aa		12.25	□□□□□ -0.45
SYNE1-215	ENST00000460912	INSR	P06213	1382 aa		12.24	□□□□□ -0.45
SYNE1-215	ENST00000460912	ARHGAP23	Q9P227	1491 aa		12.24	□□□□□ -0.45
SYNE1-215	ENST00000460912	ZBED9	Q6R2W3	1325 aa		12.23	□□□□□ -0.45
SYNE1-215	ENST00000460912	ROCK2	O75116	1388 aa	Known RBP	12.22	□□□□□ -0.45
SYNE1-215	ENST00000460912	SMG6	Q86US8	1419 aa	Known RBP	12.22	□□□□□ -0.45
SYNE1-215	ENST00000460912	KTN1	Q86UP2	1357 aa	Known RBP	12.22	□□□□□ -0.45
SYNE1-215	ENST00000460912	PARD3	Q8TEW0	1356 aa		12.21	□□□□□ -0.45
SYNE1-215	ENST00000460912	A2ML1	A8K2U0	1454 aa		12.2	□□□□□ -0.46
SYNE1-215	ENST00000460912	MED14	O60244	1454 aa		12.2	□□□□□ -0.46
SYNE1-215	ENST00000460912	PIK3C2G	O75747	1445 aa		12.19	□□□□□ -0.46
SYNE1-215	ENST00000460912	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	12.18	□□□□□ -0.46
SYNE1-215	ENST00000460912	XRN1	Q8IZH2	1706 aa	Known RBP	12.18	□□□□□ -0.46
SYNE1-215	ENST00000460912	PTPRM	P28827	1452 aa		12.18	□□□□□ -0.46
SYNE1-215	ENST00000460912	PER1	O15534	1290 aa	Predicted RBP	12.17	□□□□□ -0.46
SYNE1-215	ENST00000460912	TESK2	Q96S53	571 aa		12.17	□□□□□ -0.46
SYNE1-215	ENST00000460912	ERICH6B	Q5W0A0	696 aa		12.17	□□□□□ -0.46
SYNE1-215	ENST00000460912	NLRP1	Q9C000	1473 aa		12.17	□□□□□ -0.46
SYNE1-215	ENST00000460912	KANK1	Q14678	1352 aa		12.16	□□□□□ -0.46
SYNE1-215	ENST00000460912	BLM	P54132	1417 aa	Predicted RBP	12.16	□□□□□ -0.46
SYNE1-215	ENST00000460912	STRC	Q7RTU9	1775 aa		12.16	□□□□□ -0.46
SYNE1-215	ENST00000460912	CCDC144A	A2RUR9	1427 aa		12.16	□□□□□ -0.46
SYNE1-215	ENST00000460912	KIF3B	O15066	747 aa		12.15	□□□□□ -0.46
SYNE1-215	ENST00000460912	DIP2A	Q14689	1571 aa		12.15	□□□□□ -0.46
SYNE1-215	ENST00000460912	FKBP8	Q14318	412 aa		12.15	□□□□□ -0.47
SYNE1-215	ENST00000460912	CHD2	O14647	1828 aa	Known RBP	12.14	□□□□□ -0.47
SYNE1-215	ENST00000460912	USP32	Q8NFA0	1604 aa		12.14	□□□□□ -0.47
SYNE1-215	ENST00000460912	PNISR	Q8TF01	805 aa	Known RBP	12.14	□□□□□ -0.47
SYNE1-215	ENST00000460912	QRICH2	Q9H0J4	1663 aa		12.13	□□□□□ -0.47
SYNE1-215	ENST00000460912	ZMYM3	Q14202	1370 aa		12.13	□□□□□ -0.47
SYNE1-215	ENST00000460912	BRD4	O60885	1362 aa	Predicted RBP	12.13	□□□□□ -0.47
SYNE1-215	ENST00000460912	DISP3	Q9P2K9	1392 aa		12.13	□□□□□ -0.47
SYNE1-215	ENST00000460912	NWD1	Q149M9	1564 aa		12.12	□□□□□ -0.47
SYNE1-215	ENST00000460912	ALK	Q9UM73	1620 aa		12.12	□□□□□ -0.47
SYNE1-215	ENST00000460912	CPS1	P31327	1500 aa		12.12	□□□□□ -0.47
SYNE1-215	ENST00000460912	STRCP1	A6NGW2	1772 aa		12.12	□□□□□ -0.47
SYNE1-215	ENST00000460912	SHPRH	Q149N8	1683 aa		12.12	□□□□□ -0.47
SYNE1-215	ENST00000460912	TOPAZ1	Q8N9V7	1692 aa		12.11	□□□□□ -0.47
SYNE1-215	ENST00000460912	BCL11A	Q9H165	835 aa		12.11	□□□□□ -0.47
SYNE1-215	ENST00000460912	ADGRB2	O60241	1585 aa		12.11	□□□□□ -0.47
SYNE1-215	ENST00000460912	DLC1	Q96QB1	1528 aa		12.11	□□□□□ -0.47
SYNE1-215	ENST00000460912	XIRP1	Q702N8	1843 aa	Known RBP	12.11	□□□□□ -0.47
SYNE1-215	ENST00000460912	SETD1B	Q9UPS6	1966 aa	Known RBP	12.09	□□□□□ -0.47
SYNE1-215	ENST00000460912	PRKCSH	P14314	528 aa	Predicted RBP	12.09	□□□□□ -0.47
SYNE1-215	ENST00000460912	ST20-MTHFS	A0A0A6YYL1	179 aa		12.08	□□□□□ -0.48
SYNE1-215	ENST00000460912	HNRNPU	Q00839	825 aa	Known RBP eCLIP	12.08	□□□□□ -0.48
SYNE1-215	ENST00000460912	WASHC2C	Q9Y4E1	1318 aa		12.07	□□□□□ -0.48
SYNE1-215	ENST00000460912	NBPF1	Q3BBV0	1214 aa		12.06	□□□□□ -0.48
SYNE1-215	ENST00000460912	USP54	Q70EL1	1684 aa		12.05	□□□□□ -0.48
SYNE1-215	ENST00000460912	SCAF11	Q99590	1463 aa	Known RBP	12.05	□□□□□ -0.48
SYNE1-215	ENST00000460912	TECPR2	O15040	1411 aa		12.04	□□□□□ -0.48
SYNE1-215	ENST00000460912	MYBBP1A	Q9BQG0	1328 aa	Known RBP	12.04	□□□□□ -0.48
SYNE1-215	ENST00000460912	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	12.04	□□□□□ -0.48
SYNE1-215	ENST00000460912	STAC3	Q96MF2	364 aa		12.04	□□□□□ -0.48
SYNE1-215	ENST00000460912	NPC1L1	Q9UHC9	1359 aa		12.04	□□□□□ -0.48
SYNE1-215	ENST00000460912	CARD11	Q9BXL7	1154 aa		12.04	□□□□□ -0.48
SYNE1-215	ENST00000460912	RPGRIP1L	Q68CZ1	1315 aa		12.03	□□□□□ -0.48
SYNE1-215	ENST00000460912	DCAF11	Q8TEB1	546 aa		12.03	□□□□□ -0.48
SYNE1-215	ENST00000460912	MRS2	Q9HD23	443 aa		12.03	□□□□□ -0.48
SYNE1-215	ENST00000460912	ADAMTS13	Q76LX8	1427 aa		12.03	□□□□□ -0.48
SYNE1-215	ENST00000460912	AKAP12	Q02952	1782 aa		12.02	□□□□□ -0.48
SYNE1-215	ENST00000460912	MARF1	Q9Y4F3	1742 aa	Known RBP	12.02	□□□□□ -0.49
SYNE1-215	ENST00000460912	TNR	Q92752	1358 aa		12.02	□□□□□ -0.49
SYNE1-215	ENST00000460912	RALBP1	Q15311	655 aa		12.01	□□□□□ -0.49
SYNE1-215	ENST00000460912	NRK	Q7Z2Y5	1582 aa		12.01	□□□□□ -0.49
SYNE1-215	ENST00000460912	LMTK3	Q96Q04	1460 aa		12.01	□□□□□ -0.49
SYNE1-215	ENST00000460912	SLC52A1	Q9NWF4	448 aa		12.01	□□□□□ -0.49
SYNE1-215	ENST00000460912	ANKRD26	Q9UPS8	1709 aa		12.01	□□□□□ -0.49
SYNE1-215	ENST00000460912	SBNO2	Q9Y2G9	1366 aa		12.01	□□□□□ -0.49
SYNE1-215	ENST00000460912	NALCN	Q8IZF0	1738 aa		12	□□□□□ -0.49
SYNE1-215	ENST00000460912	RBM19	Q9Y4C8	960 aa	Known RBP	12	□□□□□ -0.49
SYNE1-215	ENST00000460912	FBXO31	Q5XUX0	539 aa	Predicted RBP	12	□□□□□ -0.49
SYNE1-215	ENST00000460912	IDI1	Q13907	227 aa		11.99	□□□□□ -0.49
SYNE1-215	ENST00000460912	NUDC	Q9Y266	331 aa		11.99	□□□□□ -0.49
SYNE1-215	ENST00000460912	TULP4	Q9NRJ4	1543 aa		11.99	□□□□□ -0.49
SYNE1-215	ENST00000460912	TRH	P20396	242 aa	Predicted RBP	11.99	□□□□□ -0.49
SYNE1-215	ENST00000460912	FANCI	Q9NVI1	1328 aa		11.98	□□□□□ -0.49
SYNE1-215	ENST00000460912	GGT6	Q6P531	493 aa		11.98	□□□□□ -0.49
SYNE1-215	ENST00000460912	VIRMA	Q69YN4	1812 aa	Known RBP	11.98	□□□□□ -0.49
SYNE1-215	ENST00000460912	MON2	Q7Z3U7	1717 aa		11.98	□□□□□ -0.49
SYNE1-215	ENST00000460912	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	11.97	□□□□□ -0.49
SYNE1-215	ENST00000460912	PPP4R2	Q9NY27	417 aa		11.97	□□□□□ -0.49
SYNE1-215	ENST00000460912	FMN2	Q9NZ56	1722 aa		11.97	□□□□□ -0.49

Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms