RNA–Protein interactions for RNA: ENST00000460801.5

PTPRN-210, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 2

Gene PTPRN, Length 2,239 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-210ENST00000460801 DIP2BQ9P265 1576 aa18.96■□□□□ 0.63
PTPRN-210ENST00000460801 ADGRF5Q8IZF2 1346 aa18.96■□□□□ 0.63
PTPRN-210ENST00000460801 CAMSAP1Q5T5Y3 1602 aa18.96■□□□□ 0.63
PTPRN-210ENST00000460801 BRD4O60885 1362 aaPredicted RBP18.96■□□□□ 0.63
PTPRN-210ENST00000460801 PARD3Q8TEW0 1356 aa18.95■□□□□ 0.62
PTPRN-210ENST00000460801 NEFLP07196 543 aa18.95■□□□□ 0.62
PTPRN-210ENST00000460801 PNISRQ8TF01 805 aaKnown RBP18.95■□□□□ 0.62
PTPRN-210ENST00000460801 YEATS2Q9ULM3 1422 aa18.94■□□□□ 0.62
PTPRN-210ENST00000460801 NOS1P29475 1434 aa18.94■□□□□ 0.62
PTPRN-210ENST00000460801 FAM69CQ0P6D2 419 aa18.94■□□□□ 0.62
PTPRN-210ENST00000460801 TMC1Q8TDI8 760 aa18.94■□□□□ 0.62
PTPRN-210ENST00000460801 EIF3AQ14152 1382 aaKnown RBP18.93■□□□□ 0.62
PTPRN-210ENST00000460801 CFAP70Q5T0N1 1121 aa18.93■□□□□ 0.62
PTPRN-210ENST00000460801 PANK3Q9H999 370 aa18.93■□□□□ 0.62
PTPRN-210ENST00000460801 ZMYM4Q5VZL5 1548 aa18.92■□□□□ 0.62
PTPRN-210ENST00000460801 ARHGAP31Q2M1Z3 1444 aa18.92■□□□□ 0.62
PTPRN-210ENST00000460801 SIGLEC1Q9BZZ2 1709 aa18.92■□□□□ 0.62
PTPRN-210ENST00000460801 ZC3H13Q5T200 1668 aaKnown RBP18.91■□□□□ 0.62
PTPRN-210ENST00000460801 PPLO60437 1756 aa18.91■□□□□ 0.62
PTPRN-210ENST00000460801 CDCA8Q53HL2 280 aa18.9■□□□□ 0.62
PTPRN-210ENST00000460801 PELP1Q8IZL8 1130 aaKnown RBP18.9■□□□□ 0.62
PTPRN-210ENST00000460801 LRPPRCP42704 1394 aaKnown RBP18.9■□□□□ 0.62
PTPRN-210ENST00000460801 PIK3C2BO00750 1634 aa18.9■□□□□ 0.62
PTPRN-210ENST00000460801 RPGRIP1LQ68CZ1 1315 aa18.89■□□□□ 0.61
PTPRN-210ENST00000460801 CHGAP10645 457 aaKnown RBP18.88■□□□□ 0.61
PTPRN-210ENST00000460801 NLRP13Q86W25 1043 aa18.88■□□□□ 0.61
PTPRN-210ENST00000460801 SYNMO15061 1565 aa18.88■□□□□ 0.61
PTPRN-210ENST00000460801 SETBP1Q9Y6X0 1596 aa18.88■□□□□ 0.61
PTPRN-210ENST00000460801 SLC24A1O60721 1099 aa18.87■□□□□ 0.61
PTPRN-210ENST00000460801 PIK3C2GO75747 1445 aa18.86■□□□□ 0.61
PTPRN-210ENST00000460801 TSPOAP1O95153 1857 aa18.85■□□□□ 0.61
PTPRN-210ENST00000460801 MYO3AQ8NEV4 1616 aa18.84■□□□□ 0.61
PTPRN-210ENST00000460801 BCANQ96GW7 911 aa18.84■□□□□ 0.61
PTPRN-210ENST00000460801 C14orf93Q9H972 538 aaKnown RBP18.84■□□□□ 0.61
PTPRN-210ENST00000460801 CC2D1BQ5T0F9 858 aaKnown RBP18.83■□□□□ 0.6
PTPRN-210ENST00000460801 MYOM1P52179 1685 aa18.83■□□□□ 0.6
PTPRN-210ENST00000460801 KDM5AP29375 1690 aaKnown RBP18.82■□□□□ 0.6
PTPRN-210ENST00000460801 SBNO2Q9Y2G9 1366 aa18.82■□□□□ 0.6
PTPRN-210ENST00000460801 ERVK-7P63135 1459 aa18.81■□□□□ 0.6
PTPRN-210ENST00000460801 REREQ9P2R6 1566 aa18.81■□□□□ 0.6
PTPRN-210ENST00000460801 ADGRB1O14514 1584 aa18.81■□□□□ 0.6
PTPRN-210ENST00000460801 SMG6Q86US8 1419 aaKnown RBP18.8■□□□□ 0.6
PTPRN-210ENST00000460801 SLC52A1Q9NWF4 448 aa18.8■□□□□ 0.6
PTPRN-210ENST00000460801 NEXMIFQ5QGS0 1516 aa18.79■□□□□ 0.6
PTPRN-210ENST00000460801 IDI1Q13907 227 aa18.79■□□□□ 0.6
PTPRN-210ENST00000460801 KNSTRNQ9Y448 316 aa18.79■□□□□ 0.6
PTPRN-210ENST00000460801 PREX1Q8TCU6 1659 aa18.78■□□□□ 0.6
PTPRN-210ENST00000460801 AGLP35573 1532 aa18.78■□□□□ 0.6
PTPRN-210ENST00000460801 AMER1Q5JTC6 1135 aaPredicted RBP18.78■□□□□ 0.6
PTPRN-210ENST00000460801 VGFO15240 615 aaPredicted RBP18.77■□□□□ 0.6
PTPRN-210ENST00000460801 NPC1L1Q9UHC9 1359 aa18.76■□□□□ 0.59
PTPRN-210ENST00000460801 CENPJQ9HC77 1338 aaPredicted RBP18.76■□□□□ 0.59
PTPRN-210ENST00000460801 INSRP06213 1382 aa18.76■□□□□ 0.59
PTPRN-210ENST00000460801 ASXL1Q8IXJ9 1541 aa18.76■□□□□ 0.59
PTPRN-210ENST00000460801 ZFYVE9O95405 1425 aa18.75■□□□□ 0.59
PTPRN-210ENST00000460801 ERICH6BQ5W0A0 696 aa18.75■□□□□ 0.59
PTPRN-210ENST00000460801 PPP6R1Q9UPN7 881 aa18.75■□□□□ 0.59
PTPRN-210ENST00000460801 NUDCQ9Y266 331 aa18.74■□□□□ 0.59
PTPRN-210ENST00000460801 KIF13AQ9H1H9 1805 aa18.74■□□□□ 0.59
PTPRN-210ENST00000460801 TRAK1Q9UPV9 953 aa18.73■□□□□ 0.59
PTPRN-210ENST00000460801 TMEM131LA2VDJ0 1609 aa18.73■□□□□ 0.59
PTPRN-210ENST00000460801 TMEM132EQ6IEE7 984 aa18.72■□□□□ 0.59
PTPRN-210ENST00000460801 MYO5BQ9ULV0 1848 aa18.72■□□□□ 0.59
PTPRN-210ENST00000460801 QRICH2Q9H0J4 1663 aa18.71■□□□□ 0.59
PTPRN-210ENST00000460801 IRX6P78412 446 aaPredicted RBP18.71■□□□□ 0.59
PTPRN-210ENST00000460801 PPP2R1AP30153 589 aa18.7■□□□□ 0.58
PTPRN-210ENST00000460801 NUTM2DQ5VT03 806 aaPredicted RBP18.69■□□□□ 0.58
PTPRN-210ENST00000460801 FBXO31Q5XUX0 539 aaPredicted RBP18.69■□□□□ 0.58
PTPRN-210ENST00000460801 BLMP54132 1417 aaPredicted RBP18.68■□□□□ 0.58
PTPRN-210ENST00000460801 SENP3-EIF4A1A0A087X0R7 540 aa18.68■□□□□ 0.58
PTPRN-210ENST00000460801 CARD14Q9BXL6 1004 aa18.67■□□□□ 0.58
PTPRN-210ENST00000460801 ARHGEF28Q8N1W1 1705 aaKnown RBP18.67■□□□□ 0.58
PTPRN-210ENST00000460801 RNF123Q5XPI4 1314 aa18.67■□□□□ 0.58
PTPRN-210ENST00000460801 ARHGEF40Q8TER5 1519 aa18.66■□□□□ 0.58
PTPRN-210ENST00000460801 CLTCQ00610 1675 aaKnown RBP18.66■□□□□ 0.58
PTPRN-210ENST00000460801 PUS7Q96PZ0 661 aaKnown RBP18.64■□□□□ 0.57
PTPRN-210ENST00000460801 PDE3BQ13370 1112 aa18.64■□□□□ 0.57
PTPRN-210ENST00000460801 TSHZ2Q9NRE2 1034 aa18.63■□□□□ 0.57
PTPRN-210ENST00000460801 SPATA31D1Q6ZQQ2 1576 aa18.63■□□□□ 0.57
PTPRN-210ENST00000460801 PPP4R2Q9NY27 417 aa18.62■□□□□ 0.57
PTPRN-210ENST00000460801 ADAMTS8Q9UP79 889 aa18.61■□□□□ 0.57
PTPRN-210ENST00000460801 TULP4Q9NRJ4 1543 aa18.59■□□□□ 0.57
PTPRN-210ENST00000460801 EVC2Q86UK5 1308 aa18.59■□□□□ 0.57
PTPRN-210ENST00000460801 SLC12A5Q9H2X9 1139 aa18.59■□□□□ 0.57
PTPRN-210ENST00000460801 WDR43Q15061 677 aaKnown RBP eCLIP18.57■□□□□ 0.56
PTPRN-210ENST00000460801 SALL2Q9Y467 1007 aaPredicted RBP18.57■□□□□ 0.56
PTPRN-210ENST00000460801 A2ML1A8K2U0 1454 aa18.57■□□□□ 0.56
PTPRN-210ENST00000460801 MLECQ14165 292 aa18.57■□□□□ 0.56
PTPRN-210ENST00000460801 STAG3Q9UJ98 1225 aa18.56■□□□□ 0.56
PTPRN-210ENST00000460801 NSD3Q9BZ95 1437 aa18.56■□□□□ 0.56
PTPRN-210ENST00000460801 ALKQ9UM73 1620 aa18.56■□□□□ 0.56
PTPRN-210ENST00000460801 PTPRMP28827 1452 aa18.56■□□□□ 0.56
PTPRN-210ENST00000460801 USP32Q8NFA0 1604 aa18.55■□□□□ 0.56
PTPRN-210ENST00000460801 YTHDC2Q9H6S0 1430 aaKnown RBP18.54■□□□□ 0.56
PTPRN-210ENST00000460801 STK26Q9P289 416 aa18.53■□□□□ 0.56
PTPRN-210ENST00000460801 CDCA7LQ96GN5 454 aa18.52■□□□□ 0.56
PTPRN-210ENST00000460801 ZMYM3Q14202 1370 aa18.52■□□□□ 0.55
PTPRN-210ENST00000460801 ANKRD36BQ8N2N9 1353 aa18.51■□□□□ 0.55
PTPRN-210ENST00000460801 RIMS2Q9UQ26 1411 aa18.51■□□□□ 0.55
PTPRN-210ENST00000460801 SENP3Q9H4L4 574 aaPredicted RBP18.5■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms