RNA–Protein interactions for RNA: ENST00000459775.5

USP39-210, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 2,148 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-210ENST00000459775 PPP1R15AO75807 674 aaPredicted RBP14.81□□□□□ -0.04
USP39-210ENST00000459775 KCNA4P22459 653 aa14.81□□□□□ -0.04
USP39-210ENST00000459775 IDI1Q13907 227 aa14.81□□□□□ -0.04
USP39-210ENST00000459775 ZNF326Q5BKZ1 582 aaKnown RBP14.81□□□□□ -0.04
USP39-210ENST00000459775 CLTCL1P53675 1640 aa14.81□□□□□ -0.04
USP39-210ENST00000459775 TRPM2O94759 1503 aa14.8□□□□□ -0.04
USP39-210ENST00000459775 SPHKAPQ2M3C7 1700 aa14.8□□□□□ -0.04
USP39-210ENST00000459775 NOS1P29475 1434 aa14.8□□□□□ -0.04
USP39-210ENST00000459775 ARHGAP31Q2M1Z3 1444 aa14.8□□□□□ -0.04
USP39-210ENST00000459775 CPS1P31327 1500 aa14.8□□□□□ -0.04
USP39-210ENST00000459775 DCAF11Q8TEB1 546 aa14.8□□□□□ -0.04
USP39-210ENST00000459775 ZC3H13Q5T200 1668 aaKnown RBP14.79□□□□□ -0.04
USP39-210ENST00000459775 SYNMO15061 1565 aa14.79□□□□□ -0.04
USP39-210ENST00000459775 SENP3Q9H4L4 574 aaPredicted RBP14.79□□□□□ -0.04
USP39-210ENST00000459775 NBPF8Q3BBV2 869 aa14.78□□□□□ -0.04
USP39-210ENST00000459775 ERVK-7P63135 1459 aa14.78□□□□□ -0.04
USP39-210ENST00000459775 ZNF335Q9H4Z2 1342 aaPredicted RBP14.77□□□□□ -0.04
USP39-210ENST00000459775 NUTM2DQ5VT03 806 aaPredicted RBP14.77□□□□□ -0.04
USP39-210ENST00000459775 MED1Q15648 1581 aaPredicted RBP14.77□□□□□ -0.04
USP39-210ENST00000459775 A2ML1A8K2U0 1454 aa14.76□□□□□ -0.05
USP39-210ENST00000459775 SPATA31E1Q6ZUB1 1445 aa14.76□□□□□ -0.05
USP39-210ENST00000459775 NCKAP5LQ9HCH0 1330 aa14.76□□□□□ -0.05
USP39-210ENST00000459775 PLEKHG5O94827 1062 aa14.75□□□□□ -0.05
USP39-210ENST00000459775 POLR1AO95602 1720 aaPredicted RBP14.74□□□□□ -0.05
USP39-210ENST00000459775 TAOK2Q9UL54 1235 aa14.72□□□□□ -0.05
USP39-210ENST00000459775 TOM1O60784 492 aa14.72□□□□□ -0.05
USP39-210ENST00000459775 SLC52A1Q9NWF4 448 aa14.72□□□□□ -0.05
USP39-210ENST00000459775 HIRIP3Q9BW71 556 aaPredicted RBP14.71□□□□□ -0.05
USP39-210ENST00000459775 TNRQ92752 1358 aa14.71□□□□□ -0.05
USP39-210ENST00000459775 STAG3Q9UJ98 1225 aa14.7□□□□□ -0.06
USP39-210ENST00000459775 PIK3C2BO00750 1634 aa14.69□□□□□ -0.06
USP39-210ENST00000459775 ADGRF5Q8IZF2 1346 aa14.68□□□□□ -0.06
USP39-210ENST00000459775 PODXL2Q9NZ53 605 aa14.67□□□□□ -0.06
USP39-210ENST00000459775 NEURL4Q96JN8 1562 aa14.67□□□□□ -0.06
USP39-210ENST00000459775 ADGRB3O60242 1522 aa14.67□□□□□ -0.06
USP39-210ENST00000459775 NBPF1Q3BBV0 1214 aa14.66□□□□□ -0.06
USP39-210ENST00000459775 HSPA1LP34931 641 aa14.65□□□□□ -0.06
USP39-210ENST00000459775 KIF1BO60333 1816 aa14.65□□□□□ -0.06
USP39-210ENST00000459775 NLRP1Q9C000 1473 aa14.64□□□□□ -0.07
USP39-210ENST00000459775 TMEM131LA2VDJ0 1609 aa14.64□□□□□ -0.07
USP39-210ENST00000459775 PRAG1Q86YV5 1406 aa14.63□□□□□ -0.07
USP39-210ENST00000459775 PHF23Q9BUL5 403 aaPredicted RBP14.63□□□□□ -0.07
USP39-210ENST00000459775 MYO5BQ9ULV0 1848 aa14.63□□□□□ -0.07
USP39-210ENST00000459775 MED14O60244 1454 aa14.63□□□□□ -0.07
USP39-210ENST00000459775 SCAF1Q9H7N4 1312 aaKnown RBP14.63□□□□□ -0.07
USP39-210ENST00000459775 CFAP70Q5T0N1 1121 aa14.62□□□□□ -0.07
USP39-210ENST00000459775 PIP4K2BP78356 416 aa14.6□□□□□ -0.07
USP39-210ENST00000459775 ANKLE2Q86XL3 938 aa14.6□□□□□ -0.07
USP39-210ENST00000459775 NEXMIFQ5QGS0 1516 aa14.59□□□□□ -0.07
USP39-210ENST00000459775 NPHP4O75161 1426 aaPredicted RBP14.59□□□□□ -0.07
USP39-210ENST00000459775 LTKP29376 864 aa14.59□□□□□ -0.07
USP39-210ENST00000459775 THEMISQ8N1K5 641 aaPredicted RBP14.59□□□□□ -0.07
USP39-210ENST00000459775 RIMS2Q9UQ26 1411 aa14.58□□□□□ -0.08
USP39-210ENST00000459775 TMEM132EQ6IEE7 984 aa14.58□□□□□ -0.08
USP39-210ENST00000459775 IQGAP1P46940 1657 aa14.58□□□□□ -0.08
USP39-210ENST00000459775 RPGRIP1LQ68CZ1 1315 aa14.58□□□□□ -0.08
USP39-210ENST00000459775 CARD11Q9BXL7 1154 aa14.57□□□□□ -0.08
USP39-210ENST00000459775 ROCK2O75116 1388 aaKnown RBP14.57□□□□□ -0.08
USP39-210ENST00000459775 VGFO15240 615 aaPredicted RBP14.57□□□□□ -0.08
USP39-210ENST00000459775 HSPA5P11021 654 aaKnown RBP14.57□□□□□ -0.08
USP39-210ENST00000459775 TMEM2Q9UHN6 1383 aa14.56□□□□□ -0.08
USP39-210ENST00000459775 IFT172Q9UG01 1749 aa14.56□□□□□ -0.08
USP39-210ENST00000459775 ALKQ9UM73 1620 aa14.56□□□□□ -0.08
USP39-210ENST00000459775 UBR1Q8IWV7 1749 aa14.56□□□□□ -0.08
USP39-210ENST00000459775 PPLO60437 1756 aa14.55□□□□□ -0.08
USP39-210ENST00000459775 ZFYVE9O95405 1425 aa14.55□□□□□ -0.08
USP39-210ENST00000459775 MYOM2P54296 1465 aa14.55□□□□□ -0.08
USP39-210ENST00000459775 RALGAPBQ86X10 1494 aa14.55□□□□□ -0.08
USP39-210ENST00000459775 ZNF316A6NFI3 1004 aaPredicted RBP14.54□□□□□ -0.08
USP39-210ENST00000459775 TXNDC2Q86VQ3 553 aa14.54□□□□□ -0.08
USP39-210ENST00000459775 BCANQ96GW7 911 aa14.54□□□□□ -0.08
USP39-210ENST00000459775 PIK3C2GO75747 1445 aa14.54□□□□□ -0.08
USP39-210ENST00000459775 TRPM1Q7Z4N2 1603 aa14.53□□□□□ -0.08
USP39-210ENST00000459775 NRXN1Q9ULB1 1477 aa14.53□□□□□ -0.08
USP39-210ENST00000459775 C14orf93Q9H972 538 aaKnown RBP14.53□□□□□ -0.08
USP39-210ENST00000459775 EIF4G2P78344 907 aaKnown RBP eCLIP14.52□□□□□ -0.09
USP39-210ENST00000459775 LRRC7Q96NW7 1537 aa14.52□□□□□ -0.09
USP39-210ENST00000459775 USP47Q96K76 1375 aa14.52□□□□□ -0.09
USP39-210ENST00000459775 STAC3Q96MF2 364 aa14.51□□□□□ -0.09
USP39-210ENST00000459775 SLC26A8Q96RN1 970 aa14.51□□□□□ -0.09
USP39-210ENST00000459775 ST20-MTHFSA0A0A6YYL1 179 aa14.5□□□□□ -0.09
USP39-210ENST00000459775 C11orf95C9JLR9 678 aaPredicted RBP14.5□□□□□ -0.09
USP39-210ENST00000459775 STK26Q9P289 416 aa14.5□□□□□ -0.09
USP39-210ENST00000459775 TRAK1Q9UPV9 953 aa14.49□□□□□ -0.09
USP39-210ENST00000459775 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.48□□□□□ -0.09
USP39-210ENST00000459775 EID1Q9Y6B2 187 aa14.48□□□□□ -0.09
USP39-210ENST00000459775 GPRASP1Q5JY77 1395 aa14.48□□□□□ -0.09
USP39-210ENST00000459775 ARHGAP23Q9P227 1491 aa14.47□□□□□ -0.09
USP39-210ENST00000459775 METP08581 1390 aa14.46□□□□□ -0.09
USP39-210ENST00000459775 SLIT1O75093 1534 aa14.46□□□□□ -0.1
USP39-210ENST00000459775 STRCP1A6NGW2 1772 aa14.46□□□□□ -0.1
USP39-210ENST00000459775 HDGFP51858 240 aaKnown RBP14.45□□□□□ -0.1
USP39-210ENST00000459775 ASXL1Q8IXJ9 1541 aa14.45□□□□□ -0.1
USP39-210ENST00000459775 SAFB2Q14151 953 aaKnown RBP eCLIP14.45□□□□□ -0.1
USP39-210ENST00000459775 KDM5AP29375 1690 aaKnown RBP14.45□□□□□ -0.1
USP39-210ENST00000459775 ADGRB1O14514 1584 aa14.45□□□□□ -0.1
USP39-210ENST00000459775 SCAF11Q99590 1463 aaKnown RBP14.44□□□□□ -0.1
USP39-210ENST00000459775 NRXN3Q9Y4C0 1643 aa14.44□□□□□ -0.1
USP39-210ENST00000459775 POLR3GLQ9BT43 218 aa14.44□□□□□ -0.1
USP39-210ENST00000459775 ADAMTS13Q76LX8 1427 aa14.44□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms