RNA–Protein interactions for RNA: ENST00000458034.1

RFX3-211, Transcript of regulatory factor X3, humanhuman

TSL 3

Gene RFX3, Length 814 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-211ENST00000458034 FANCIQ9NVI1 1328 aa14.68□□□□□ -0.06
RFX3-211ENST00000458034 PTPRTO14522 1441 aa14.68□□□□□ -0.06
RFX3-211ENST00000458034 CLTCL1P53675 1640 aa14.68□□□□□ -0.06
RFX3-211ENST00000458034 VWDEQ8N2E2 1590 aa14.68□□□□□ -0.06
RFX3-211ENST00000458034 PDE3BQ13370 1112 aa14.67□□□□□ -0.06
RFX3-211ENST00000458034 NBPF1Q3BBV0 1214 aa14.67□□□□□ -0.06
RFX3-211ENST00000458034 SCAPERQ9BY12 1400 aa14.66□□□□□ -0.06
RFX3-211ENST00000458034 KIF1BO60333 1816 aa14.66□□□□□ -0.06
RFX3-211ENST00000458034 CFAP74Q9C0B2 1584 aa14.66□□□□□ -0.06
RFX3-211ENST00000458034 FANCAO15360 1455 aa14.66□□□□□ -0.06
RFX3-211ENST00000458034 CDCA8Q53HL2 280 aa14.66□□□□□ -0.06
RFX3-211ENST00000458034 SYNMO15061 1565 aa14.65□□□□□ -0.06
RFX3-211ENST00000458034 DISP3Q9P2K9 1392 aa14.65□□□□□ -0.06
RFX3-211ENST00000458034 TESK2Q96S53 571 aa14.65□□□□□ -0.06
RFX3-211ENST00000458034 SCAF11Q99590 1463 aaKnown RBP14.64□□□□□ -0.07
RFX3-211ENST00000458034 EIF3AQ14152 1382 aaKnown RBP14.64□□□□□ -0.07
RFX3-211ENST00000458034 ADGRL1O94910 1474 aa14.63□□□□□ -0.07
RFX3-211ENST00000458034 SLC24A1O60721 1099 aa14.63□□□□□ -0.07
RFX3-211ENST00000458034 PER1O15534 1290 aaPredicted RBP14.62□□□□□ -0.07
RFX3-211ENST00000458034 B4GALNT3Q6L9W6 998 aa14.62□□□□□ -0.07
RFX3-211ENST00000458034 KDM5AP29375 1690 aaKnown RBP14.61□□□□□ -0.07
RFX3-211ENST00000458034 BLMP54132 1417 aaPredicted RBP14.61□□□□□ -0.07
RFX3-211ENST00000458034 MYOM2P54296 1465 aa14.61□□□□□ -0.07
RFX3-211ENST00000458034 KCNA4P22459 653 aa14.6□□□□□ -0.07
RFX3-211ENST00000458034 IFT172Q9UG01 1749 aa14.6□□□□□ -0.07
RFX3-211ENST00000458034 MAP3K4Q9Y6R4 1608 aa14.59□□□□□ -0.07
RFX3-211ENST00000458034 CCDC136Q96JN2 1154 aa14.59□□□□□ -0.07
RFX3-211ENST00000458034 RBM42Q9BTD8 480 aaKnown RBP14.59□□□□□ -0.07
RFX3-211ENST00000458034 PANK3Q9H999 370 aa14.59□□□□□ -0.07
RFX3-211ENST00000458034 EFCAB6Q5THR3 1501 aa14.59□□□□□ -0.07
RFX3-211ENST00000458034 MROH1Q8NDA8 1641 aa14.59□□□□□ -0.07
RFX3-211ENST00000458034 LMTK2Q8IWU2 1503 aa14.58□□□□□ -0.08
RFX3-211ENST00000458034 AFAP1Q8N556 730 aa14.58□□□□□ -0.08
RFX3-211ENST00000458034 ERICH6Q7L0X2 663 aa14.57□□□□□ -0.08
RFX3-211ENST00000458034 MYT1LQ9UL68 1186 aa14.57□□□□□ -0.08
RFX3-211ENST00000458034 KIDINS220Q9ULH0 1771 aa14.57□□□□□ -0.08
RFX3-211ENST00000458034 MYOM1P52179 1685 aa14.56□□□□□ -0.08
RFX3-211ENST00000458034 RRP1P56182 461 aaKnown RBP14.56□□□□□ -0.08
RFX3-211ENST00000458034 CC2D1BQ5T0F9 858 aaKnown RBP14.56□□□□□ -0.08
RFX3-211ENST00000458034 ASXL2Q76L83 1435 aa14.56□□□□□ -0.08
RFX3-211ENST00000458034 ZNF518AQ6AHZ1 1483 aa14.56□□□□□ -0.08
RFX3-211ENST00000458034 ASXL1Q8IXJ9 1541 aa14.56□□□□□ -0.08
RFX3-211ENST00000458034 ABCA6Q8N139 1617 aa14.55□□□□□ -0.08
RFX3-211ENST00000458034 SAMD1Q6SPF0 538 aaPredicted RBP14.55□□□□□ -0.08
RFX3-211ENST00000458034 KNSTRNQ9Y448 316 aa14.55□□□□□ -0.08
RFX3-211ENST00000458034 KIF3BO15066 747 aa14.54□□□□□ -0.08
RFX3-211ENST00000458034 RCAN3Q9UKA8 241 aa14.54□□□□□ -0.08
RFX3-211ENST00000458034 NPC1L1Q9UHC9 1359 aa14.54□□□□□ -0.08
RFX3-211ENST00000458034 MYO3AQ8NEV4 1616 aa14.54□□□□□ -0.08
RFX3-211ENST00000458034 PPRC1Q5VV67 1664 aaKnown RBP14.53□□□□□ -0.08
RFX3-211ENST00000458034 MROH2AA6NES4 1674 aa14.52□□□□□ -0.09
RFX3-211ENST00000458034 SETBP1Q9Y6X0 1596 aa14.51□□□□□ -0.09
RFX3-211ENST00000458034 PIK3C2GO75747 1445 aa14.51□□□□□ -0.09
RFX3-211ENST00000458034 NPM1P06748 294 aaKnown RBP eCLIP14.51□□□□□ -0.09
RFX3-211ENST00000458034 CHRDL2Q6WN34 429 aa14.51□□□□□ -0.09
RFX3-211ENST00000458034 WDR43Q15061 677 aaKnown RBP eCLIP14.5□□□□□ -0.09
RFX3-211ENST00000458034 HECW2Q9P2P5 1572 aa14.5□□□□□ -0.09
RFX3-211ENST00000458034 ADGRB3O60242 1522 aa14.5□□□□□ -0.09
RFX3-211ENST00000458034 NRXN1Q9ULB1 1477 aa14.49□□□□□ -0.09
RFX3-211ENST00000458034 PPLO60437 1756 aa14.48□□□□□ -0.09
RFX3-211ENST00000458034 MLH3Q9UHC1 1453 aa14.47□□□□□ -0.09
RFX3-211ENST00000458034 PPP2R1AP30153 589 aa14.47□□□□□ -0.09
RFX3-211ENST00000458034 POGZQ7Z3K3 1410 aa14.47□□□□□ -0.09
RFX3-211ENST00000458034 SBNO2Q9Y2G9 1366 aa14.47□□□□□ -0.09
RFX3-211ENST00000458034 ZC3H13Q5T200 1668 aaKnown RBP14.46□□□□□ -0.09
RFX3-211ENST00000458034 AMER1Q5JTC6 1135 aaPredicted RBP14.45□□□□□ -0.1
RFX3-211ENST00000458034 UGGT1Q9NYU2 1555 aa14.45□□□□□ -0.1
RFX3-211ENST00000458034 ERVK-7P63135 1459 aa14.44□□□□□ -0.1
RFX3-211ENST00000458034 SALL2Q9Y467 1007 aaPredicted RBP14.44□□□□□ -0.1
RFX3-211ENST00000458034 QRICH2Q9H0J4 1663 aa14.43□□□□□ -0.1
RFX3-211ENST00000458034 CD109Q6YHK3 1445 aa14.43□□□□□ -0.1
RFX3-211ENST00000458034 TCERG1O14776 1098 aaKnown RBP14.43□□□□□ -0.1
RFX3-211ENST00000458034 CAMSAP1Q5T5Y3 1602 aa14.43□□□□□ -0.1
RFX3-211ENST00000458034 SENP3-EIF4A1A0A087X0R7 540 aa14.42□□□□□ -0.1
RFX3-211ENST00000458034 ANP32AP39687 249 aaKnown RBP14.42□□□□□ -0.1
RFX3-211ENST00000458034 NGEFQ8N5V2 710 aa14.42□□□□□ -0.1
RFX3-211ENST00000458034 NEO1Q92859 1461 aa14.42□□□□□ -0.1
RFX3-211ENST00000458034 RPGRIP1LQ68CZ1 1315 aa14.41□□□□□ -0.1
RFX3-211ENST00000458034 EXOC6Q8TAG9 804 aa14.41□□□□□ -0.1
RFX3-211ENST00000458034 FRMPD1Q5SYB0 1578 aa14.41□□□□□ -0.1
RFX3-211ENST00000458034 CFAP70Q5T0N1 1121 aa14.4□□□□□ -0.1
RFX3-211ENST00000458034 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.4□□□□□ -0.1
RFX3-211ENST00000458034 ADAMTS8Q9UP79 889 aa14.4□□□□□ -0.1
RFX3-211ENST00000458034 USP32Q8NFA0 1604 aa14.4□□□□□ -0.1
RFX3-211ENST00000458034 ABCC3O15438 1527 aa14.4□□□□□ -0.1
RFX3-211ENST00000458034 NOS1P29475 1434 aa14.4□□□□□ -0.1
RFX3-211ENST00000458034 ADGRF5Q8IZF2 1346 aa14.4□□□□□ -0.1
RFX3-211ENST00000458034 MS4A1P11836 297 aa14.39□□□□□ -0.11
RFX3-211ENST00000458034 CDCA7LQ96GN5 454 aa14.39□□□□□ -0.11
RFX3-211ENST00000458034 OSCARQ8IYS5 282 aa14.38□□□□□ -0.11
RFX3-211ENST00000458034 CFAP65Q6ZU64 1925 aaKnown RBP14.38□□□□□ -0.11
RFX3-211ENST00000458034 NPATQ14207 1427 aa14.38□□□□□ -0.11
RFX3-211ENST00000458034 CENPJQ9HC77 1338 aaPredicted RBP14.38□□□□□ -0.11
RFX3-211ENST00000458034 PIK3C2BO00750 1634 aa14.37□□□□□ -0.11
RFX3-211ENST00000458034 GOLGA2Q08379 1002 aa14.37□□□□□ -0.11
RFX3-211ENST00000458034 NOP58Q9Y2X3 529 aaKnown RBP14.37□□□□□ -0.11
RFX3-211ENST00000458034 CHGAP10645 457 aaKnown RBP14.35□□□□□ -0.11
RFX3-211ENST00000458034 POLA2Q14181 598 aa14.35□□□□□ -0.11
RFX3-211ENST00000458034 ZNF521Q96K83 1311 aa14.35□□□□□ -0.11
RFX3-211ENST00000458034 PLEKHH1Q9ULM0 1364 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms