RNA–Protein interactions for RNA: ENST00000456560.6

SEMA3B-209, Transcript of semaphorin 3B, humanhuman

TSL 1 (best) BASIC

Gene SEMA3B, Length 2,221 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3B-209ENST00000456560 EFCAB6Q5THR3 1501 aa24.72■■□□□ 1.55
SEMA3B-209ENST00000456560 LMTK2Q8IWU2 1503 aa24.71■■□□□ 1.55
SEMA3B-209ENST00000456560 INSRP06213 1382 aa24.7■■□□□ 1.55
SEMA3B-209ENST00000456560 CC2D1BQ5T0F9 858 aaKnown RBP24.7■■□□□ 1.54
SEMA3B-209ENST00000456560 KIF13AQ9H1H9 1805 aa24.69■■□□□ 1.54
SEMA3B-209ENST00000456560 SENP3-EIF4A1A0A087X0R7 540 aa24.69■■□□□ 1.54
SEMA3B-209ENST00000456560 RAPGEF3O95398 923 aa24.68■■□□□ 1.54
SEMA3B-209ENST00000456560 ZMYM4Q5VZL5 1548 aa24.68■■□□□ 1.54
SEMA3B-209ENST00000456560 MYOM2P54296 1465 aa24.68■■□□□ 1.54
SEMA3B-209ENST00000456560 PPRC1Q5VV67 1664 aaKnown RBP24.67■■□□□ 1.54
SEMA3B-209ENST00000456560 UGGT1Q9NYU2 1555 aa24.67■■□□□ 1.54
SEMA3B-209ENST00000456560 B4GALNT3Q6L9W6 998 aa24.67■■□□□ 1.54
SEMA3B-209ENST00000456560 CFAP74Q9C0B2 1584 aa24.66■■□□□ 1.54
SEMA3B-209ENST00000456560 KIF1BO60333 1816 aa24.65■■□□□ 1.54
SEMA3B-209ENST00000456560 NEO1Q92859 1461 aa24.65■■□□□ 1.54
SEMA3B-209ENST00000456560 CDCA8Q53HL2 280 aa24.65■■□□□ 1.54
SEMA3B-209ENST00000456560 SYNMO15061 1565 aa24.64■■□□□ 1.54
SEMA3B-209ENST00000456560 IFT172Q9UG01 1749 aa24.64■■□□□ 1.53
SEMA3B-209ENST00000456560 POGZQ7Z3K3 1410 aa24.64■■□□□ 1.53
SEMA3B-209ENST00000456560 BLMP54132 1417 aaPredicted RBP24.63■■□□□ 1.53
SEMA3B-209ENST00000456560 EIF3AQ14152 1382 aaKnown RBP24.62■■□□□ 1.53
SEMA3B-209ENST00000456560 MLH3Q9UHC1 1453 aa24.62■■□□□ 1.53
SEMA3B-209ENST00000456560 ABCA6Q8N139 1617 aa24.62■■□□□ 1.53
SEMA3B-209ENST00000456560 TRHP20396 242 aaPredicted RBP24.61■■□□□ 1.53
SEMA3B-209ENST00000456560 PDE3BQ13370 1112 aa24.61■■□□□ 1.53
SEMA3B-209ENST00000456560 FRMPD1Q5SYB0 1578 aa24.6■■□□□ 1.53
SEMA3B-209ENST00000456560 NRXN1Q9ULB1 1477 aa24.6■■□□□ 1.53
SEMA3B-209ENST00000456560 MSH5O43196 834 aa24.59■■□□□ 1.53
SEMA3B-209ENST00000456560 MROH2AA6NES4 1674 aa24.59■■□□□ 1.53
SEMA3B-209ENST00000456560 MYOM1P52179 1685 aa24.59■■□□□ 1.53
SEMA3B-209ENST00000456560 ADGRF5Q8IZF2 1346 aa24.59■■□□□ 1.53
SEMA3B-209ENST00000456560 AMER1Q5JTC6 1135 aaPredicted RBP24.58■■□□□ 1.52
SEMA3B-209ENST00000456560 CFAP70Q5T0N1 1121 aa24.58■■□□□ 1.52
SEMA3B-209ENST00000456560 KNSTRNQ9Y448 316 aa24.58■■□□□ 1.52
SEMA3B-209ENST00000456560 HECW2Q9P2P5 1572 aa24.56■■□□□ 1.52
SEMA3B-209ENST00000456560 BCL11AQ9H165 835 aa24.56■■□□□ 1.52
SEMA3B-209ENST00000456560 ADGRB3O60242 1522 aa24.56■■□□□ 1.52
SEMA3B-209ENST00000456560 FANCIQ9NVI1 1328 aa24.55■■□□□ 1.52
SEMA3B-209ENST00000456560 KDM5AP29375 1690 aaKnown RBP24.54■■□□□ 1.52
SEMA3B-209ENST00000456560 ASXL1Q8IXJ9 1541 aa24.53■■□□□ 1.52
SEMA3B-209ENST00000456560 NPC1L1Q9UHC9 1359 aa24.53■■□□□ 1.52
SEMA3B-209ENST00000456560 SLC24A1O60721 1099 aa24.53■■□□□ 1.52
SEMA3B-209ENST00000456560 PPP2R1AP30153 589 aa24.53■■□□□ 1.52
SEMA3B-209ENST00000456560 NPATQ14207 1427 aa24.52■■□□□ 1.52
SEMA3B-209ENST00000456560 SALL2Q9Y467 1007 aaPredicted RBP24.51■■□□□ 1.51
SEMA3B-209ENST00000456560 ERVK-7P63135 1459 aa24.51■■□□□ 1.51
SEMA3B-209ENST00000456560 RRP1P56182 461 aaKnown RBP24.5■■□□□ 1.51
SEMA3B-209ENST00000456560 MYO3AQ8NEV4 1616 aa24.5■■□□□ 1.51
SEMA3B-209ENST00000456560 RCAN3Q9UKA8 241 aa24.5■■□□□ 1.51
SEMA3B-209ENST00000456560 RICTORQ6R327 1708 aa24.49■■□□□ 1.51
SEMA3B-209ENST00000456560 SETBP1Q9Y6X0 1596 aa24.48■■□□□ 1.51
SEMA3B-209ENST00000456560 NOS1P29475 1434 aa24.48■■□□□ 1.51
SEMA3B-209ENST00000456560 ABCC3O15438 1527 aa24.47■■□□□ 1.51
SEMA3B-209ENST00000456560 CDCA7LQ96GN5 454 aa24.47■■□□□ 1.51
SEMA3B-209ENST00000456560 CCDC136Q96JN2 1154 aa24.47■■□□□ 1.51
SEMA3B-209ENST00000456560 ADAMTS8Q9UP79 889 aa24.46■■□□□ 1.51
SEMA3B-209ENST00000456560 PPLO60437 1756 aa24.46■■□□□ 1.51
SEMA3B-209ENST00000456560 PIK3C2GO75747 1445 aa24.46■■□□□ 1.51
SEMA3B-209ENST00000456560 SBNO2Q9Y2G9 1366 aa24.46■■□□□ 1.51
SEMA3B-209ENST00000456560 GGT6Q6P531 493 aa24.46■■□□□ 1.51
SEMA3B-209ENST00000456560 ERICH6Q7L0X2 663 aa24.45■■□□□ 1.5
SEMA3B-209ENST00000456560 YEATS2Q9ULM3 1422 aa24.44■■□□□ 1.5
SEMA3B-209ENST00000456560 CFAP65Q6ZU64 1925 aaKnown RBP24.42■■□□□ 1.5
SEMA3B-209ENST00000456560 C14orf93Q9H972 538 aaKnown RBP24.41■■□□□ 1.5
SEMA3B-209ENST00000456560 RPGRIP1LQ68CZ1 1315 aa24.41■■□□□ 1.5
SEMA3B-209ENST00000456560 CAMSAP1Q5T5Y3 1602 aa24.41■■□□□ 1.5
SEMA3B-209ENST00000456560 CHGAP10645 457 aaKnown RBP24.4■■□□□ 1.5
SEMA3B-209ENST00000456560 DIP2CQ9Y2E4 1556 aa24.4■■□□□ 1.5
SEMA3B-209ENST00000456560 ADGRB1O14514 1584 aa24.39■■□□□ 1.49
SEMA3B-209ENST00000456560 WDR43Q15061 677 aaKnown RBP eCLIP24.38■■□□□ 1.492e-6■□□□□ 9.3
SEMA3B-209ENST00000456560 SIGLEC1Q9BZZ2 1709 aa24.38■■□□□ 1.49
SEMA3B-209ENST00000456560 CARD14Q9BXL6 1004 aa24.38■■□□□ 1.49
SEMA3B-209ENST00000456560 CENPJQ9HC77 1338 aaPredicted RBP24.37■■□□□ 1.49
SEMA3B-209ENST00000456560 EXOC6Q8TAG9 804 aa24.37■■□□□ 1.49
SEMA3B-209ENST00000456560 PIK3C2BO00750 1634 aa24.36■■□□□ 1.49
SEMA3B-209ENST00000456560 ZC3H13Q5T200 1668 aaKnown RBP24.35■■□□□ 1.49
SEMA3B-209ENST00000456560 PLEKHH1Q9ULM0 1364 aa24.34■■□□□ 1.49
SEMA3B-209ENST00000456560 ZNF521Q96K83 1311 aa24.33■■□□□ 1.49
SEMA3B-209ENST00000456560 ARHGAP31Q2M1Z3 1444 aa24.32■■□□□ 1.48
SEMA3B-209ENST00000456560 QRICH2Q9H0J4 1663 aa24.31■■□□□ 1.48
SEMA3B-209ENST00000456560 TRAK1Q9UPV9 953 aa24.3■■□□□ 1.48
SEMA3B-209ENST00000456560 NEXMIFQ5QGS0 1516 aa24.28■■□□□ 1.48
SEMA3B-209ENST00000456560 TMEM132EQ6IEE7 984 aa24.27■■□□□ 1.48
SEMA3B-209ENST00000456560 DUSP27Q5VZP5 1158 aa24.26■■□□□ 1.47
SEMA3B-209ENST00000456560 VGFO15240 615 aaPredicted RBP24.24■■□□□ 1.47
SEMA3B-209ENST00000456560 PLIN1O60240 522 aa24.23■■□□□ 1.47
SEMA3B-209ENST00000456560 GOLGA2Q08379 1002 aa24.23■■□□□ 1.47
SEMA3B-209ENST00000456560 POLR3AO14802 1390 aaPredicted RBP24.21■■□□□ 1.47
SEMA3B-209ENST00000456560 PUS7Q96PZ0 661 aaKnown RBP24.21■■□□□ 1.47
SEMA3B-209ENST00000456560 ZFYVE9O95405 1425 aa24.21■■□□□ 1.47
SEMA3B-209ENST00000456560 NSD3Q9BZ95 1437 aa24.21■■□□□ 1.47
SEMA3B-209ENST00000456560 SLFN5Q08AF3 891 aa24.2■■□□□ 1.47
SEMA3B-209ENST00000456560 IDI1Q13907 227 aa24.2■■□□□ 1.47
SEMA3B-209ENST00000456560 TRMT2AQ8IZ69 625 aaKnown RBP24.2■■□□□ 1.47
SEMA3B-209ENST00000456560 SLC12A5Q9H2X9 1139 aa24.2■■□□□ 1.47
SEMA3B-209ENST00000456560 ARHGEF28Q8N1W1 1705 aaKnown RBP24.2■■□□□ 1.46
SEMA3B-209ENST00000456560 CCDC146Q8IYE0 955 aa24.19■■□□□ 1.46
SEMA3B-209ENST00000456560 USP32Q8NFA0 1604 aa24.19■■□□□ 1.46
SEMA3B-209ENST00000456560 SLC52A1Q9NWF4 448 aa24.19■■□□□ 1.46
SEMA3B-209ENST00000456560 MLECQ14165 292 aa24.18■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms