RNA–Protein interactions for RNA: ENST00000453306.4

VCX3B-204, Transcript of variable charge X-linked 3B, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VCX3B, Length 868 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3B-204ENST00000453306 SLC52A1Q9NWF4 448 aa23.29■■□□□ 1.32
VCX3B-204ENST00000453306 PHF23Q9BUL5 403 aaPredicted RBP23.28■■□□□ 1.32
VCX3B-204ENST00000453306 NOS1P29475 1434 aa23.27■■□□□ 1.32
VCX3B-204ENST00000453306 MPHOSPH9Q99550 1183 aa23.25■■□□□ 1.31
VCX3B-204ENST00000453306 RPRD2Q5VT52 1461 aaKnown RBP23.24■■□□□ 1.31
VCX3B-204ENST00000453306 KCNA6P17658 529 aa23.23■■□□□ 1.31
VCX3B-204ENST00000453306 SLC4A1APQ9BWU0 796 aaKnown RBP23.23■■□□□ 1.31
VCX3B-204ENST00000453306 SENP3Q9H4L4 574 aaPredicted RBP23.23■■□□□ 1.31
VCX3B-204ENST00000453306 ADGRB3O60242 1522 aa23.23■■□□□ 1.31
VCX3B-204ENST00000453306 IQGAP3Q86VI3 1631 aa23.22■■□□□ 1.31
VCX3B-204ENST00000453306 FOXD1Q16676 465 aa23.22■■□□□ 1.31
VCX3B-204ENST00000453306 HDGFP51858 240 aaKnown RBP23.21■■□□□ 1.31
VCX3B-204ENST00000453306 BCANQ96GW7 911 aa23.2■■□□□ 1.3
VCX3B-204ENST00000453306 SLC26A8Q96RN1 970 aa23.19■■□□□ 1.3
VCX3B-204ENST00000453306 PROSER2Q86WR7 435 aaPredicted RBP23.18■■□□□ 1.3
VCX3B-204ENST00000453306 TET3O43151 1660 aa23.18■■□□□ 1.3
VCX3B-204ENST00000453306 TMEM94Q12767 1356 aa23.17■■□□□ 1.3
VCX3B-204ENST00000453306 FAM135BQ49AJ0 1406 aa23.16■■□□□ 1.3
VCX3B-204ENST00000453306 XIRP1Q702N8 1843 aaKnown RBP23.15■■□□□ 1.3
VCX3B-204ENST00000453306 ACIN1Q9UKV3 1341 aaKnown RBP23.14■■□□□ 1.3
VCX3B-204ENST00000453306 PPP1R15AO75807 674 aaPredicted RBP23.14■■□□□ 1.29
VCX3B-204ENST00000453306 NKTRP30414 1462 aaKnown RBP23.13■■□□□ 1.29
VCX3B-204ENST00000453306 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.11■■□□□ 1.29
VCX3B-204ENST00000453306 E9PCH4 1651 aa23.11■■□□□ 1.29
VCX3B-204ENST00000453306 DHX57Q6P158 1386 aaKnown RBP23.11■■□□□ 1.29
VCX3B-204ENST00000453306 PLEKHG1Q9ULL1 1385 aa23.11■■□□□ 1.29
VCX3B-204ENST00000453306 NWD1Q149M9 1564 aa23.1■■□□□ 1.29
VCX3B-204ENST00000453306 ZFYVE9O95405 1425 aa23.09■■□□□ 1.29
VCX3B-204ENST00000453306 RIMS2Q9UQ26 1411 aa23.09■■□□□ 1.29
VCX3B-204ENST00000453306 MSH6P52701 1360 aa23.09■■□□□ 1.29
VCX3B-204ENST00000453306 CHGAP10645 457 aaKnown RBP23.08■■□□□ 1.29
VCX3B-204ENST00000453306 RBM33Q96EV2 1170 aaKnown RBP23.06■■□□□ 1.28
VCX3B-204ENST00000453306 TMEM131LA2VDJ0 1609 aa23.06■■□□□ 1.28
VCX3B-204ENST00000453306 TBX22Q9Y458 520 aa23.05■■□□□ 1.28
VCX3B-204ENST00000453306 ANKRD30BQ9BXX2 1392 aa23.04■■□□□ 1.28
VCX3B-204ENST00000453306 ROBO1Q9Y6N7 1651 aa23.02■■□□□ 1.28
VCX3B-204ENST00000453306 NCOA3Q9Y6Q9 1424 aa23.01■■□□□ 1.27
VCX3B-204ENST00000453306 SLAIN2Q9P270 581 aa23.01■■□□□ 1.27
VCX3B-204ENST00000453306 MYO5BQ9ULV0 1848 aa23.01■■□□□ 1.27
VCX3B-204ENST00000453306 CHD2O14647 1828 aaKnown RBP22.98■■□□□ 1.27
VCX3B-204ENST00000453306 PIK3R4Q99570 1358 aa22.98■■□□□ 1.27
VCX3B-204ENST00000453306 DIP2AQ14689 1571 aa22.97■■□□□ 1.27
VCX3B-204ENST00000453306 C14orf37Q86TY3 774 aa22.97■■□□□ 1.27
VCX3B-204ENST00000453306 TRPM2O94759 1503 aa22.96■■□□□ 1.27
VCX3B-204ENST00000453306 RGS17Q9UGC6 210 aaPredicted RBP22.95■■□□□ 1.26
VCX3B-204ENST00000453306 NUTM2DQ5VT03 806 aaPredicted RBP22.94■■□□□ 1.26
VCX3B-204ENST00000453306 SIN3AQ96ST3 1273 aa22.94■■□□□ 1.26
VCX3B-204ENST00000453306 ADAMTS13Q76LX8 1427 aa22.93■■□□□ 1.26
VCX3B-204ENST00000453306 CADPS2Q86UW7 1296 aa22.92■■□□□ 1.26
VCX3B-204ENST00000453306 JCADQ9P266 1359 aa22.91■■□□□ 1.26
VCX3B-204ENST00000453306 CLTCL1P53675 1640 aa22.91■■□□□ 1.26
VCX3B-204ENST00000453306 ATF3P18847 181 aa22.91■■□□□ 1.26
VCX3B-204ENST00000453306 C19orf44Q9H6X5 657 aa22.91■■□□□ 1.26
VCX3B-204ENST00000453306 SPHKAPQ2M3C7 1700 aa22.91■■□□□ 1.26
VCX3B-204ENST00000453306 PHLPP1O60346 1717 aa22.9■■□□□ 1.26
VCX3B-204ENST00000453306 AMOTL2Q9Y2J4 779 aa22.87■■□□□ 1.25
VCX3B-204ENST00000453306 CCDC144AA2RUR9 1427 aa22.87■■□□□ 1.25
VCX3B-204ENST00000453306 SPATA31E1Q6ZUB1 1445 aa22.86■■□□□ 1.25
VCX3B-204ENST00000453306 ZNF326Q5BKZ1 582 aaKnown RBP22.86■■□□□ 1.25
VCX3B-204ENST00000453306 POTEAQ6S8J7 498 aa22.84■■□□□ 1.25
VCX3B-204ENST00000453306 NEUROD1Q13562 356 aa22.82■■□□□ 1.24
VCX3B-204ENST00000453306 RGL3Q3MIN7 710 aa22.82■■□□□ 1.24
VCX3B-204ENST00000453306 CCER1Q8TC90 406 aaPredicted RBP22.82■■□□□ 1.24
VCX3B-204ENST00000453306 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.82■■□□□ 1.24
VCX3B-204ENST00000453306 SPATA31A6Q5VVP1 1343 aa22.82■■□□□ 1.24
VCX3B-204ENST00000453306 SETBP1Q9Y6X0 1596 aa22.8■■□□□ 1.24
VCX3B-204ENST00000453306 COL16A1Q07092 1604 aaPredicted RBP22.8■■□□□ 1.24
VCX3B-204ENST00000453306 DCCP43146 1447 aa22.8■■□□□ 1.24
VCX3B-204ENST00000453306 PTPRUQ92729 1446 aa22.8■■□□□ 1.24
VCX3B-204ENST00000453306 MEX3CQ5U5Q3 659 aaKnown RBP22.78■■□□□ 1.24
VCX3B-204ENST00000453306 AHDC1Q5TGY3 1603 aaPredicted RBP22.78■■□□□ 1.24
VCX3B-204ENST00000453306 BRINP3Q76B58 766 aa22.75■■□□□ 1.23
VCX3B-204ENST00000453306 NRXN3Q9Y4C0 1643 aa22.74■■□□□ 1.23
VCX3B-204ENST00000453306 ZNF772Q68DY9 489 aaPredicted RBP22.73■■□□□ 1.23
VCX3B-204ENST00000453306 CLSPNQ9HAW4 1339 aa22.73■■□□□ 1.23
VCX3B-204ENST00000453306 XRN1Q8IZH2 1706 aaKnown RBP22.73■■□□□ 1.23
VCX3B-204ENST00000453306 L3MBTL2Q969R5 705 aa22.72■■□□□ 1.23
VCX3B-204ENST00000453306 METP08581 1390 aa22.72■■□□□ 1.23
VCX3B-204ENST00000453306 RPGRIP1LQ68CZ1 1315 aa22.7■■□□□ 1.22
VCX3B-204ENST00000453306 ADGRF5Q8IZF2 1346 aa22.7■■□□□ 1.22
VCX3B-204ENST00000453306 SHPRHQ149N8 1683 aa22.7■■□□□ 1.22
VCX3B-204ENST00000453306 NEXMIFQ5QGS0 1516 aa22.69■■□□□ 1.22
VCX3B-204ENST00000453306 VGFO15240 615 aaPredicted RBP22.69■■□□□ 1.22
VCX3B-204ENST00000453306 LRP6O75581 1613 aa22.68■■□□□ 1.22
VCX3B-204ENST00000453306 ASXL1Q8IXJ9 1541 aa22.67■■□□□ 1.22
VCX3B-204ENST00000453306 MST1RQ04912 1400 aa22.67■■□□□ 1.22
VCX3B-204ENST00000453306 KIF1BO60333 1816 aa22.67■■□□□ 1.22
VCX3B-204ENST00000453306 ADGRL3Q9HAR2 1447 aa22.66■■□□□ 1.22
VCX3B-204ENST00000453306 DCAF11Q8TEB1 546 aa22.66■■□□□ 1.22
VCX3B-204ENST00000453306 KDM2AQ9Y2K7 1162 aa22.66■■□□□ 1.22
VCX3B-204ENST00000453306 LRRC59Q96AG4 307 aaKnown RBP22.65■■□□□ 1.22
VCX3B-204ENST00000453306 NUTM2BA6NNL0 878 aaPredicted RBP22.63■■□□□ 1.21
VCX3B-204ENST00000453306 NUTM2EB1AL46 878 aaPredicted RBP22.63■■□□□ 1.21
VCX3B-204ENST00000453306 NUTM2AQ8IVF1 878 aaPredicted RBP22.63■■□□□ 1.21
VCX3B-204ENST00000453306 PTCH1Q13635 1447 aa22.6■■□□□ 1.21
VCX3B-204ENST00000453306 RXRBP28702 533 aa22.59■■□□□ 1.21
VCX3B-204ENST00000453306 NHSL1Q5SYE7 1610 aa22.59■■□□□ 1.21
VCX3B-204ENST00000453306 NBPF8Q3BBV2 869 aa22.58■■□□□ 1.21
VCX3B-204ENST00000453306 NRXN1Q9ULB1 1477 aa22.58■■□□□ 1.2
VCX3B-204ENST00000453306 SETD1AO15047 1707 aaKnown RBP22.57■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms