RNA–Protein interactions for RNA: ENST00000453285.1

SDC4P-201, Transcript of syndecan 4 pseudogene, humanhuman

BASIC

Gene SDC4P, Length 601 nt, Biotype processed pseudogene, Subcellular localisation Exosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4P-201ENST00000453285 UBR1Q8IWV7 1749 aa8.52□□□□□ -1.05
SDC4P-201ENST00000453285 HSPA5P11021 654 aaKnown RBP8.52□□□□□ -1.05
SDC4P-201ENST00000453285 ZNF326Q5BKZ1 582 aaKnown RBP8.52□□□□□ -1.05
SDC4P-201ENST00000453285 HIRIP3Q9BW71 556 aaPredicted RBP8.52□□□□□ -1.05
SDC4P-201ENST00000453285 ESF1Q9H501 851 aaKnown RBP8.52□□□□□ -1.05
SDC4P-201ENST00000453285 IQGAP1P46940 1657 aa8.52□□□□□ -1.05
SDC4P-201ENST00000453285 RPGRIP1LQ68CZ1 1315 aa8.52□□□□□ -1.05
SDC4P-201ENST00000453285 LMTK3Q96Q04 1460 aa8.51□□□□□ -1.05
SDC4P-201ENST00000453285 GPRASP1Q5JY77 1395 aa8.51□□□□□ -1.05
SDC4P-201ENST00000453285 CHGAP10645 457 aaKnown RBP8.51□□□□□ -1.05
SDC4P-201ENST00000453285 EIF4G2P78344 907 aaKnown RBP eCLIP8.51□□□□□ -1.05
SDC4P-201ENST00000453285 NBPF1Q3BBV0 1214 aa8.51□□□□□ -1.05
SDC4P-201ENST00000453285 ADGRF5Q8IZF2 1346 aa8.51□□□□□ -1.05
SDC4P-201ENST00000453285 A2ML1A8K2U0 1454 aa8.5□□□□□ -1.05
SDC4P-201ENST00000453285 TNRQ92752 1358 aa8.49□□□□□ -1.05
SDC4P-201ENST00000453285 ZFYVE9O95405 1425 aa8.49□□□□□ -1.05
SDC4P-201ENST00000453285 CEBPAP49715 358 aaPredicted RBP8.49□□□□□ -1.05
SDC4P-201ENST00000453285 ROCK2O75116 1388 aaKnown RBP8.48□□□□□ -1.05
SDC4P-201ENST00000453285 USP47Q96K76 1375 aa8.48□□□□□ -1.05
SDC4P-201ENST00000453285 PIK3C2GO75747 1445 aa8.48□□□□□ -1.05
SDC4P-201ENST00000453285 DIEXFQ68CQ4 756 aaKnown RBP8.48□□□□□ -1.05
SDC4P-201ENST00000453285 CARD11Q9BXL7 1154 aa8.48□□□□□ -1.05
SDC4P-201ENST00000453285 SETD1AO15047 1707 aaKnown RBP8.48□□□□□ -1.05
SDC4P-201ENST00000453285 SETBP1Q9Y6X0 1596 aa8.48□□□□□ -1.05
SDC4P-201ENST00000453285 C11orf95C9JLR9 678 aaPredicted RBP8.47□□□□□ -1.05
SDC4P-201ENST00000453285 MYO3AQ8NEV4 1616 aa8.47□□□□□ -1.05
SDC4P-201ENST00000453285 NLRP1Q9C000 1473 aa8.46□□□□□ -1.05
SDC4P-201ENST00000453285 CFAP70Q5T0N1 1121 aa8.46□□□□□ -1.06
SDC4P-201ENST00000453285 C14orf93Q9H972 538 aaKnown RBP8.46□□□□□ -1.06
SDC4P-201ENST00000453285 ADGRB1O14514 1584 aa8.46□□□□□ -1.06
SDC4P-201ENST00000453285 NRXN3Q9Y4C0 1643 aa8.45□□□□□ -1.06
SDC4P-201ENST00000453285 VGFO15240 615 aaPredicted RBP8.45□□□□□ -1.06
SDC4P-201ENST00000453285 NUTM2DQ5VT03 806 aaPredicted RBP8.45□□□□□ -1.06
SDC4P-201ENST00000453285 WASHC2AQ641Q2 1341 aa8.45□□□□□ -1.06
SDC4P-201ENST00000453285 RIMS2Q9UQ26 1411 aa8.45□□□□□ -1.06
SDC4P-201ENST00000453285 ZNF142P52746 1687 aaPredicted RBP8.44□□□□□ -1.06
SDC4P-201ENST00000453285 ARHGEF28Q8N1W1 1705 aaKnown RBP8.44□□□□□ -1.06
SDC4P-201ENST00000453285 ST20-MTHFSA0A0A6YYL1 179 aa8.44□□□□□ -1.06
SDC4P-201ENST00000453285 STAG3Q9UJ98 1225 aa8.44□□□□□ -1.06
SDC4P-201ENST00000453285 SCAF11Q99590 1463 aaKnown RBP8.44□□□□□ -1.06
SDC4P-201ENST00000453285 ASXL1Q8IXJ9 1541 aa8.44□□□□□ -1.06
SDC4P-201ENST00000453285 ALKQ9UM73 1620 aa8.43□□□□□ -1.06
SDC4P-201ENST00000453285 CCDC7Q96M83 1385 aa8.43□□□□□ -1.06
SDC4P-201ENST00000453285 DDX10Q13206 875 aaKnown RBP8.42□□□□□ -1.06
SDC4P-201ENST00000453285 TESK2Q96S53 571 aa8.42□□□□□ -1.06
SDC4P-201ENST00000453285 TMEM2Q9UHN6 1383 aa8.42□□□□□ -1.06
SDC4P-201ENST00000453285 PTPRMP28827 1452 aa8.42□□□□□ -1.06
SDC4P-201ENST00000453285 ARHGAP23Q9P227 1491 aa8.42□□□□□ -1.06
SDC4P-201ENST00000453285 SLIT1O75093 1534 aa8.42□□□□□ -1.06
SDC4P-201ENST00000453285 CEP170BQ9Y4F5 1589 aaPredicted RBP8.42□□□□□ -1.06
SDC4P-201ENST00000453285 QRICH2Q9H0J4 1663 aa8.41□□□□□ -1.06
SDC4P-201ENST00000453285 KIF7Q2M1P5 1343 aa8.41□□□□□ -1.06
SDC4P-201ENST00000453285 PLPPR3Q6T4P5 718 aa8.41□□□□□ -1.06
SDC4P-201ENST00000453285 TMEM132EQ6IEE7 984 aa8.4□□□□□ -1.06
SDC4P-201ENST00000453285 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.4□□□□□ -1.06
SDC4P-201ENST00000453285 LTKP29376 864 aa8.39□□□□□ -1.07
SDC4P-201ENST00000453285 KNDC1Q76NI1 1749 aa8.39□□□□□ -1.07
SDC4P-201ENST00000453285 DISP3Q9P2K9 1392 aa8.38□□□□□ -1.07
SDC4P-201ENST00000453285 HDGFP51858 240 aaKnown RBP8.38□□□□□ -1.07
SDC4P-201ENST00000453285 MIER1Q8N108 512 aa8.38□□□□□ -1.07
SDC4P-201ENST00000453285 THEMISQ8N1K5 641 aaPredicted RBP8.38□□□□□ -1.07
SDC4P-201ENST00000453285 MED14O60244 1454 aa8.38□□□□□ -1.07
SDC4P-201ENST00000453285 ADAMTS13Q76LX8 1427 aa8.37□□□□□ -1.07
SDC4P-201ENST00000453285 PLEKHG1Q9ULL1 1385 aa8.37□□□□□ -1.07
SDC4P-201ENST00000453285 MYOM1P52179 1685 aa8.37□□□□□ -1.07
SDC4P-201ENST00000453285 SENP3Q9H4L4 574 aaPredicted RBP8.37□□□□□ -1.07
SDC4P-201ENST00000453285 TRAK1Q9UPV9 953 aa8.37□□□□□ -1.07
SDC4P-201ENST00000453285 YTHDC2Q9H6S0 1430 aaKnown RBP8.37□□□□□ -1.07
SDC4P-201ENST00000453285 EIF3AQ14152 1382 aaKnown RBP8.36□□□□□ -1.07
SDC4P-201ENST00000453285 SBNO2Q9Y2G9 1366 aa8.36□□□□□ -1.07
SDC4P-201ENST00000453285 DLC1Q96QB1 1528 aa8.36□□□□□ -1.07
SDC4P-201ENST00000453285 TXNDC2Q86VQ3 553 aa8.36□□□□□ -1.07
SDC4P-201ENST00000453285 FBXO41Q8TF61 875 aa8.36□□□□□ -1.07
SDC4P-201ENST00000453285 CHD2O14647 1828 aaKnown RBP8.36□□□□□ -1.07
SDC4P-201ENST00000453285 METP08581 1390 aa8.35□□□□□ -1.07
SDC4P-201ENST00000453285 CENPJQ9HC77 1338 aaPredicted RBP8.35□□□□□ -1.07
SDC4P-201ENST00000453285 KDM4FA0A1W2PPD8 638 aa8.35□□□□□ -1.07
SDC4P-201ENST00000453285 TMF1P82094 1093 aa8.35□□□□□ -1.07
SDC4P-201ENST00000453285 PHF23Q9BUL5 403 aaPredicted RBP8.35□□□□□ -1.07
SDC4P-201ENST00000453285 LRPPRCP42704 1394 aaKnown RBP8.35□□□□□ -1.07
SDC4P-201ENST00000453285 EID1Q9Y6B2 187 aa8.34□□□□□ -1.07
SDC4P-201ENST00000453285 DIP2AQ14689 1571 aa8.34□□□□□ -1.07
SDC4P-201ENST00000453285 ABCC11Q96J66 1382 aa8.34□□□□□ -1.07
SDC4P-201ENST00000453285 TECPR2O15040 1411 aa8.33□□□□□ -1.08
SDC4P-201ENST00000453285 SLC24A1O60721 1099 aa8.33□□□□□ -1.08
SDC4P-201ENST00000453285 STK26Q9P289 416 aa8.33□□□□□ -1.08
SDC4P-201ENST00000453285 CPS1P31327 1500 aa8.33□□□□□ -1.08
SDC4P-201ENST00000453285 TULP4Q9NRJ4 1543 aa8.33□□□□□ -1.08
SDC4P-201ENST00000453285 XRN1Q8IZH2 1706 aaKnown RBP8.32□□□□□ -1.08
SDC4P-201ENST00000453285 PTPRUQ92729 1446 aa8.32□□□□□ -1.08
SDC4P-201ENST00000453285 SIRT1Q96EB6 747 aa8.32□□□□□ -1.08
SDC4P-201ENST00000453285 POLR3GLQ9BT43 218 aa8.32□□□□□ -1.08
SDC4P-201ENST00000453285 TBX22Q9Y458 520 aa8.32□□□□□ -1.08
SDC4P-201ENST00000453285 SIPA1L2Q9P2F8 1722 aaPredicted RBP8.32□□□□□ -1.08
SDC4P-201ENST00000453285 ANKLE2Q86XL3 938 aa8.31□□□□□ -1.08
SDC4P-201ENST00000453285 PRAM1Q96QH2 718 aa8.31□□□□□ -1.08
SDC4P-201ENST00000453285 FAM135BQ49AJ0 1406 aa8.3□□□□□ -1.08
SDC4P-201ENST00000453285 PER1O15534 1290 aaPredicted RBP8.3□□□□□ -1.08
SDC4P-201ENST00000453285 CDCA8Q53HL2 280 aa8.3□□□□□ -1.08
SDC4P-201ENST00000453285 WAPLQ7Z5K2 1190 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms