RNA–Protein interactions for RNA: ENST00000453259.2

LYSMD3-202, Transcript of LysM domain containing 3, humanhuman

TSL 3

Gene LYSMD3, Length 553 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD3-202ENST00000453259 SLC26A8Q96RN1 970 aa22.28■■□□□ 1.16
LYSMD3-202ENST00000453259 NCOA3Q9Y6Q9 1424 aa22.28■■□□□ 1.16
LYSMD3-202ENST00000453259 PLEKHG1Q9ULL1 1385 aa22.27■■□□□ 1.16
LYSMD3-202ENST00000453259 ZFYVE9O95405 1425 aa22.26■■□□□ 1.15
LYSMD3-202ENST00000453259 ANKRD50Q9ULJ7 1429 aa22.26■■□□□ 1.15
LYSMD3-202ENST00000453259 CHIC2Q9UKJ5 165 aa22.26■■□□□ 1.15
LYSMD3-202ENST00000453259 SLAIN2Q9P270 581 aa22.22■■□□□ 1.15
LYSMD3-202ENST00000453259 BCANQ96GW7 911 aa22.21■■□□□ 1.15
LYSMD3-202ENST00000453259 CHD2O14647 1828 aaKnown RBP22.21■■□□□ 1.15
LYSMD3-202ENST00000453259 JCADQ9P266 1359 aa22.21■■□□□ 1.15
LYSMD3-202ENST00000453259 GCC2Q8IWJ2 1684 aa22.2■■□□□ 1.15
LYSMD3-202ENST00000453259 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.2■■□□□ 1.14
LYSMD3-202ENST00000453259 RIMS2Q9UQ26 1411 aa22.2■■□□□ 1.14
LYSMD3-202ENST00000453259 DIP2AQ14689 1571 aa22.2■■□□□ 1.14
LYSMD3-202ENST00000453259 TMEM131LA2VDJ0 1609 aa22.2■■□□□ 1.14
LYSMD3-202ENST00000453259 PPP1R15AO75807 674 aaPredicted RBP22.19■■□□□ 1.14
LYSMD3-202ENST00000453259 TBX22Q9Y458 520 aa22.19■■□□□ 1.14
LYSMD3-202ENST00000453259 PIK3R4Q99570 1358 aa22.19■■□□□ 1.14
LYSMD3-202ENST00000453259 PHLPP1O60346 1717 aa22.18■■□□□ 1.14
LYSMD3-202ENST00000453259 UNC13BO14795 1591 aa22.18■■□□□ 1.14
LYSMD3-202ENST00000453259 POTEAQ6S8J7 498 aa22.17■■□□□ 1.14
LYSMD3-202ENST00000453259 COL16A1Q07092 1604 aaPredicted RBP22.13■■□□□ 1.13
LYSMD3-202ENST00000453259 MYO5BQ9ULV0 1848 aa22.13■■□□□ 1.13
LYSMD3-202ENST00000453259 SPATA31A6Q5VVP1 1343 aa22.13■■□□□ 1.13
LYSMD3-202ENST00000453259 FAM50AQ14320 339 aaKnown RBP22.13■■□□□ 1.13
LYSMD3-202ENST00000453259 RBM33Q96EV2 1170 aaKnown RBP22.13■■□□□ 1.13
LYSMD3-202ENST00000453259 ROCK1Q13464 1354 aa22.12■■□□□ 1.13
LYSMD3-202ENST00000453259 CADPS2Q86UW7 1296 aa22.12■■□□□ 1.13
LYSMD3-202ENST00000453259 AHDC1Q5TGY3 1603 aaPredicted RBP22.09■■□□□ 1.13
LYSMD3-202ENST00000453259 IQGAP3Q86VI3 1631 aa22.09■■□□□ 1.13
LYSMD3-202ENST00000453259 ADAMTS13Q76LX8 1427 aa22.09■■□□□ 1.13
LYSMD3-202ENST00000453259 C19orf44Q9H6X5 657 aa22.09■■□□□ 1.13
LYSMD3-202ENST00000453259 TRPM2O94759 1503 aa22.08■■□□□ 1.13
LYSMD3-202ENST00000453259 E9PCH4 1651 aa22.07■■□□□ 1.12
LYSMD3-202ENST00000453259 DCCP43146 1447 aa22.07■■□□□ 1.12
LYSMD3-202ENST00000453259 ATF3P18847 181 aa22.06■■□□□ 1.12
LYSMD3-202ENST00000453259 C14orf37Q86TY3 774 aa22.06■■□□□ 1.12
LYSMD3-202ENST00000453259 SHPRHQ149N8 1683 aa22.05■■□□□ 1.12
LYSMD3-202ENST00000453259 ZNF772Q68DY9 489 aaPredicted RBP22.05■■□□□ 1.12
LYSMD3-202ENST00000453259 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.05■■□□□ 1.12
LYSMD3-202ENST00000453259 CHGAP10645 457 aaKnown RBP22.01■■□□□ 1.11
LYSMD3-202ENST00000453259 LRP6O75581 1613 aa22■■□□□ 1.11
LYSMD3-202ENST00000453259 SETBP1Q9Y6X0 1596 aa21.99■■□□□ 1.11
LYSMD3-202ENST00000453259 MEX3CQ5U5Q3 659 aaKnown RBP21.98■■□□□ 1.11
LYSMD3-202ENST00000453259 NUP155O75694 1391 aa21.98■■□□□ 1.11
LYSMD3-202ENST00000453259 SETD1AO15047 1707 aaKnown RBP21.97■■□□□ 1.11
LYSMD3-202ENST00000453259 AMOTL2Q9Y2J4 779 aa21.97■■□□□ 1.11
LYSMD3-202ENST00000453259 CDK12Q9NYV4 1490 aaPredicted RBP21.96■■□□□ 1.11
LYSMD3-202ENST00000453259 XRN1Q8IZH2 1706 aaKnown RBP21.96■■□□□ 1.11
LYSMD3-202ENST00000453259 BRINP3Q76B58 766 aa21.94■■□□□ 1.1
LYSMD3-202ENST00000453259 SETD5Q9C0A6 1442 aa21.94■■□□□ 1.1
LYSMD3-202ENST00000453259 ASXL1Q8IXJ9 1541 aa21.93■■□□□ 1.1
LYSMD3-202ENST00000453259 PTPRUQ92729 1446 aa21.93■■□□□ 1.1
LYSMD3-202ENST00000453259 NRXN3Q9Y4C0 1643 aa21.91■■□□□ 1.1
LYSMD3-202ENST00000453259 NUTM2DQ5VT03 806 aaPredicted RBP21.91■■□□□ 1.1
LYSMD3-202ENST00000453259 SPHKAPQ2M3C7 1700 aa21.91■■□□□ 1.1
LYSMD3-202ENST00000453259 NHSL1Q5SYE7 1610 aa21.9■■□□□ 1.1
LYSMD3-202ENST00000453259 MST1RQ04912 1400 aa21.89■■□□□ 1.1
LYSMD3-202ENST00000453259 RXRBP28702 533 aa21.89■■□□□ 1.09
LYSMD3-202ENST00000453259 ADGRL3Q9HAR2 1447 aa21.88■■□□□ 1.09
LYSMD3-202ENST00000453259 UPF1Q92900 1129 aaKnown RBP eCLIP21.87■■□□□ 1.09
LYSMD3-202ENST00000453259 LRRC59Q96AG4 307 aaKnown RBP21.87■■□□□ 1.09
LYSMD3-202ENST00000453259 TRIM52Q96A61 297 aa21.83■■□□□ 1.09
LYSMD3-202ENST00000453259 METP08581 1390 aa21.83■■□□□ 1.08
LYSMD3-202ENST00000453259 ZNF326Q5BKZ1 582 aaKnown RBP21.82■■□□□ 1.08
LYSMD3-202ENST00000453259 NEXMIFQ5QGS0 1516 aa21.81■■□□□ 1.08
LYSMD3-202ENST00000453259 AFF2P51816 1311 aa21.8■■□□□ 1.08
LYSMD3-202ENST00000453259 PRAG1Q86YV5 1406 aa21.8■■□□□ 1.08
LYSMD3-202ENST00000453259 LAMC1P11047 1609 aa21.8■■□□□ 1.08
LYSMD3-202ENST00000453259 PTCH1Q13635 1447 aa21.8■■□□□ 1.08
LYSMD3-202ENST00000453259 PNPLA6Q8IY17 1366 aa21.79■■□□□ 1.08
LYSMD3-202ENST00000453259 NUTM2BA6NNL0 878 aaPredicted RBP21.79■■□□□ 1.08
LYSMD3-202ENST00000453259 NUTM2EB1AL46 878 aaPredicted RBP21.79■■□□□ 1.08
LYSMD3-202ENST00000453259 NUTM2AQ8IVF1 878 aaPredicted RBP21.79■■□□□ 1.08
LYSMD3-202ENST00000453259 NALCNQ8IZF0 1738 aa21.77■■□□□ 1.08
LYSMD3-202ENST00000453259 CLTCL1P53675 1640 aa21.77■■□□□ 1.07
LYSMD3-202ENST00000453259 RBM6P78332 1123 aaKnown RBP21.76■■□□□ 1.07
LYSMD3-202ENST00000453259 KIF1BO60333 1816 aa21.75■■□□□ 1.07
LYSMD3-202ENST00000453259 ITGAEP38570 1179 aa21.74■■□□□ 1.07
LYSMD3-202ENST00000453259 C1orf167Q5SNV9 1468 aa21.74■■□□□ 1.07
LYSMD3-202ENST00000453259 VGFO15240 615 aaPredicted RBP21.73■■□□□ 1.07
LYSMD3-202ENST00000453259 C8orf37Q96NL8 207 aa21.72■■□□□ 1.07
LYSMD3-202ENST00000453259 RGS12O14924 1447 aa21.72■■□□□ 1.07
LYSMD3-202ENST00000453259 NGLY1Q96IV0 654 aa21.71■■□□□ 1.07
LYSMD3-202ENST00000453259 RPGRIP1LQ68CZ1 1315 aa21.71■■□□□ 1.07
LYSMD3-202ENST00000453259 QTRT2Q9H974 415 aaKnown RBP21.7■■□□□ 1.06
LYSMD3-202ENST00000453259 SOS2Q07890 1332 aaPredicted RBP21.7■■□□□ 1.06
LYSMD3-202ENST00000453259 HFM1A2PYH4 1435 aa21.7■■□□□ 1.06
LYSMD3-202ENST00000453259 NAIPQ13075 1403 aa21.67■■□□□ 1.06
LYSMD3-202ENST00000453259 RRBP1Q9P2E9 1410 aaKnown RBP21.67■■□□□ 1.06
LYSMD3-202ENST00000453259 ROBO2Q9HCK4 1378 aa21.65■■□□□ 1.06
LYSMD3-202ENST00000453259 COL22A1Q8NFW1 1626 aaPredicted RBP21.65■■□□□ 1.06
LYSMD3-202ENST00000453259 ATAD2Q6PL18 1390 aa21.64■■□□□ 1.06
LYSMD3-202ENST00000453259 FOXD1Q16676 465 aa21.64■■□□□ 1.05
LYSMD3-202ENST00000453259 CDC42BPGQ6DT37 1551 aa21.63■■□□□ 1.05
LYSMD3-202ENST00000453259 DDX17Q92841 729 aaKnown RBP21.63■■□□□ 1.05
LYSMD3-202ENST00000453259 FNBP4Q8N3X1 1017 aaPredicted RBP21.62■■□□□ 1.05
LYSMD3-202ENST00000453259 TRPC5Q9UL62 973 aaPredicted RBP21.62■■□□□ 1.05
LYSMD3-202ENST00000453259 NPHP3Q7Z494 1330 aa21.6■■□□□ 1.05
LYSMD3-202ENST00000453259 ADAMTS2O95450 1211 aa21.6■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms