RNA–Protein interactions for RNA: ENST00000450000.5

CPSF7-208, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 4

Gene CPSF7, Length 574 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-208	ENST00000450000	IQGAP3	Q86VI3	1631 aa		33.16	■■■□□ 2.9
CPSF7-208	ENST00000450000	RIMS2	Q9UQ26	1411 aa		33.14	■■■□□ 2.9
CPSF7-208	ENST00000450000	STRCP1	A6NGW2	1772 aa		33.13	■■■□□ 2.89
CPSF7-208	ENST00000450000	PROSER2	Q86WR7	435 aa	Predicted RBP	33.12	■■■□□ 2.89
CPSF7-208	ENST00000450000		E9PCH4	1651 aa		33.1	■■■□□ 2.89
CPSF7-208	ENST00000450000	PLEKHG1	Q9ULL1	1385 aa		33.09	■■■□□ 2.89
CPSF7-208	ENST00000450000	NUTM2D	Q5VT03	806 aa	Predicted RBP	33.07	■■■□□ 2.88
CPSF7-208	ENST00000450000	TRIM52	Q96A61	297 aa		33.07	■■■□□ 2.88
CPSF7-208	ENST00000450000	ZFYVE9	O95405	1425 aa		33.06	■■■□□ 2.88
CPSF7-208	ENST00000450000	TMEM131L	A2VDJ0	1609 aa		33.05	■■■□□ 2.88
CPSF7-208	ENST00000450000	TMEM94	Q12767	1356 aa		33.05	■■■□□ 2.88
CPSF7-208	ENST00000450000	ZNF326	Q5BKZ1	582 aa	Known RBP	33.03	■■■□□ 2.88
CPSF7-208	ENST00000450000	NAIP	Q13075	1403 aa		33.01	■■■□□ 2.87
CPSF7-208	ENST00000450000	TBX22	Q9Y458	520 aa		33	■■■□□ 2.87
CPSF7-208	ENST00000450000	RBM33	Q96EV2	1170 aa	Known RBP	32.99	■■■□□ 2.87
CPSF7-208	ENST00000450000	MYO5B	Q9ULV0	1848 aa		32.96	■■■□□ 2.87
CPSF7-208	ENST00000450000	NKTR	P30414	1462 aa	Known RBP	32.95	■■■□□ 2.87
CPSF7-208	ENST00000450000	ILDR2	Q71H61	639 aa		32.95	■■■□□ 2.87
CPSF7-208	ENST00000450000	ALK	Q9UM73	1620 aa		32.95	■■■□□ 2.86
CPSF7-208	ENST00000450000	C14orf37	Q86TY3	774 aa		32.94	■■■□□ 2.86
CPSF7-208	ENST00000450000	MSH6	P52701	1360 aa		32.94	■■■□□ 2.86
CPSF7-208	ENST00000450000	HFM1	A2PYH4	1435 aa		32.92	■■■□□ 2.86
CPSF7-208	ENST00000450000	SLC4A1AP	Q9BWU0	796 aa	Known RBP	32.9	■■■□□ 2.86
CPSF7-208	ENST00000450000	PHF23	Q9BUL5	403 aa	Predicted RBP	32.88	■■■□□ 2.85
CPSF7-208	ENST00000450000	NWD1	Q149M9	1564 aa		32.87	■■■□□ 2.85
CPSF7-208	ENST00000450000	SPHKAP	Q2M3C7	1700 aa		32.87	■■■□□ 2.85
CPSF7-208	ENST00000450000	PIK3R4	Q99570	1358 aa		32.84	■■■□□ 2.85
CPSF7-208	ENST00000450000	FAM135B	Q49AJ0	1406 aa		32.84	■■■□□ 2.85
CPSF7-208	ENST00000450000	XIRP1	Q702N8	1843 aa	Known RBP	32.84	■■■□□ 2.85
CPSF7-208	ENST00000450000	ADAMTS13	Q76LX8	1427 aa		32.83	■■■□□ 2.85
CPSF7-208	ENST00000450000	DIP2A	Q14689	1571 aa		32.83	■■■□□ 2.85
CPSF7-208	ENST00000450000	AMOTL2	Q9Y2J4	779 aa		32.81	■■■□□ 2.84
CPSF7-208	ENST00000450000	SOCS7	O14512	581 aa		32.79	■■■□□ 2.84
CPSF7-208	ENST00000450000	SLAIN2	Q9P270	581 aa		32.79	■■■□□ 2.84
CPSF7-208	ENST00000450000	MED1	Q15648	1581 aa	Predicted RBP	32.79	■■■□□ 2.84
CPSF7-208	ENST00000450000	TRPM2	O94759	1503 aa		32.78	■■■□□ 2.84
CPSF7-208	ENST00000450000	CHD2	O14647	1828 aa	Known RBP	32.77	■■■□□ 2.84
CPSF7-208	ENST00000450000	NCOA3	Q9Y6Q9	1424 aa		32.77	■■■□□ 2.84
CPSF7-208	ENST00000450000	ATF3	P18847	181 aa		32.76	■■■□□ 2.83
CPSF7-208	ENST00000450000	CADPS2	Q86UW7	1296 aa		32.73	■■■□□ 2.83
CPSF7-208	ENST00000450000	C19orf44	Q9H6X5	657 aa		32.73	■■■□□ 2.83
CPSF7-208	ENST00000450000	CLTCL1	P53675	1640 aa		32.73	■■■□□ 2.83
CPSF7-208	ENST00000450000	VGF	O15240	615 aa	Predicted RBP	32.72	■■■□□ 2.83
CPSF7-208	ENST00000450000	ROBO1	Q9Y6N7	1651 aa		32.66	■■■□□ 2.82
CPSF7-208	ENST00000450000	FOXD1	Q16676	465 aa		32.66	■■■□□ 2.82
CPSF7-208	ENST00000450000	RPGRIP1L	Q68CZ1	1315 aa		32.66	■■■□□ 2.82
CPSF7-208	ENST00000450000	ACIN1	Q9UKV3	1341 aa	Known RBP	32.66	■■■□□ 2.82
CPSF7-208	ENST00000450000	SETBP1	Q9Y6X0	1596 aa		32.66	■■■□□ 2.82
CPSF7-208	ENST00000450000	KIF1B	O60333	1816 aa		32.65	■■■□□ 2.82
CPSF7-208	ENST00000450000	PTPRU	Q92729	1446 aa		32.64	■■■□□ 2.82
CPSF7-208	ENST00000450000	MPHOSPH9	Q99550	1183 aa		32.63	■■■□□ 2.81
CPSF7-208	ENST00000450000	NEXMIF	Q5QGS0	1516 aa		32.62	■■■□□ 2.81
CPSF7-208	ENST00000450000	MET	P08581	1390 aa		32.61	■■■□□ 2.81
CPSF7-208	ENST00000450000	CCDC144A	A2RUR9	1427 aa		32.59	■■■□□ 2.81
CPSF7-208	ENST00000450000	NRXN3	Q9Y4C0	1643 aa		32.56	■■■□□ 2.8
CPSF7-208	ENST00000450000	RGL3	Q3MIN7	710 aa		32.55	■■■□□ 2.8
CPSF7-208	ENST00000450000	SETD5	Q9C0A6	1442 aa		32.53	■■■□□ 2.8
CPSF7-208	ENST00000450000	JCAD	Q9P266	1359 aa		32.52	■■■□□ 2.8
CPSF7-208	ENST00000450000	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	32.51	■■■□□ 2.8
CPSF7-208	ENST00000450000	DCC	P43146	1447 aa		32.5	■■■□□ 2.79
CPSF7-208	ENST00000450000	PHLPP1	O60346	1717 aa		32.48	■■■□□ 2.79
CPSF7-208	ENST00000450000	XRN1	Q8IZH2	1706 aa	Known RBP	32.48	■■■□□ 2.79
CPSF7-208	ENST00000450000	BRINP3	Q76B58	766 aa		32.45	■■■□□ 2.79
CPSF7-208	ENST00000450000	ADGRL3	Q9HAR2	1447 aa		32.43	■■■□□ 2.78
CPSF7-208	ENST00000450000	MEX3C	Q5U5Q3	659 aa	Known RBP	32.41	■■■□□ 2.78
CPSF7-208	ENST00000450000	ANKRD30B	Q9BXX2	1392 aa		32.41	■■■□□ 2.78
CPSF7-208	ENST00000450000	RAB3GAP2	Q9H2M9	1393 aa		32.38	■■■□□ 2.77
CPSF7-208	ENST00000450000	ADGRF5	Q8IZF2	1346 aa		32.38	■■■□□ 2.77
CPSF7-208	ENST00000450000	PTCH1	Q13635	1447 aa		32.37	■■■□□ 2.77
CPSF7-208	ENST00000450000	SPATA31A6	Q5VVP1	1343 aa		32.37	■■■□□ 2.77
CPSF7-208	ENST00000450000	MST1R	Q04912	1400 aa		32.36	■■■□□ 2.77
CPSF7-208	ENST00000450000	RGS17	Q9UGC6	210 aa	Predicted RBP	32.36	■■■□□ 2.77
CPSF7-208	ENST00000450000	ROBO2	Q9HCK4	1378 aa		32.35	■■■□□ 2.77
CPSF7-208	ENST00000450000	PPL	O60437	1756 aa		32.35	■■■□□ 2.77
CPSF7-208	ENST00000450000	SPATA31E1	Q6ZUB1	1445 aa		32.34	■■■□□ 2.77
CPSF7-208	ENST00000450000	STK26	Q9P289	416 aa		32.34	■■■□□ 2.77
CPSF7-208	ENST00000450000	COL16A1	Q07092	1604 aa	Predicted RBP	32.33	■■■□□ 2.77
CPSF7-208	ENST00000450000	AHDC1	Q5TGY3	1603 aa	Predicted RBP	32.33	■■■□□ 2.77
CPSF7-208	ENST00000450000	ASXL1	Q8IXJ9	1541 aa		32.31	■■■□□ 2.76
CPSF7-208	ENST00000450000	LRRC59	Q96AG4	307 aa	Known RBP	32.3	■■■□□ 2.76
CPSF7-208	ENST00000450000	NUTM2B	A6NNL0	878 aa	Predicted RBP	32.28	■■■□□ 2.76
CPSF7-208	ENST00000450000	NUTM2E	B1AL46	878 aa	Predicted RBP	32.28	■■■□□ 2.76
CPSF7-208	ENST00000450000	NUTM2A	Q8IVF1	878 aa	Predicted RBP	32.28	■■■□□ 2.76
CPSF7-208	ENST00000450000	POTEA	Q6S8J7	498 aa		32.26	■■■□□ 2.75
CPSF7-208	ENST00000450000	TMEM132E	Q6IEE7	984 aa		32.25	■■■□□ 2.75
CPSF7-208	ENST00000450000	SETD1A	O15047	1707 aa	Known RBP	32.25	■■■□□ 2.75
CPSF7-208	ENST00000450000	NALCN	Q8IZF0	1738 aa		32.24	■■■□□ 2.75
CPSF7-208	ENST00000450000	PRAG1	Q86YV5	1406 aa		32.24	■■■□□ 2.75
CPSF7-208	ENST00000450000	C1orf167	Q5SNV9	1468 aa		32.23	■■■□□ 2.75
CPSF7-208	ENST00000450000	DDX17	Q92841	729 aa	Known RBP	32.23	■■■□□ 2.75
CPSF7-208	ENST00000450000	LRPPRC	P42704	1394 aa	Known RBP	32.21	■■■□□ 2.75
CPSF7-208	ENST00000450000	ZNF772	Q68DY9	489 aa	Predicted RBP	32.2	■■■□□ 2.75
CPSF7-208	ENST00000450000	PIK3C2G	O75747	1445 aa		32.19	■■■□□ 2.74
CPSF7-208	ENST00000450000	WAPL	Q7Z5K2	1190 aa		32.19	■■■□□ 2.74
CPSF7-208	ENST00000450000	ORAI2	Q96SN7	254 aa		32.19	■■■□□ 2.74
CPSF7-208	ENST00000450000	HRC	P23327	699 aa		32.18	■■■□□ 2.74
CPSF7-208	ENST00000450000	ESCO1	Q5FWF5	840 aa		32.17	■■■□□ 2.74
CPSF7-208	ENST00000450000	ABCC11	Q96J66	1382 aa		32.17	■■■□□ 2.74
CPSF7-208	ENST00000450000	SHPRH	Q149N8	1683 aa		32.16	■■■□□ 2.74
CPSF7-208	ENST00000450000	C14orf93	Q9H972	538 aa	Known RBP	32.16	■■■□□ 2.74

Retrieved 100 of 20,778 RNA–protein pairs in 85 ms