RNA–Protein interactions for RNA: ENST00000449223.3

RPS28-202, Transcript of ribosomal protein S28, humanhuman

TSL 2

Gene RPS28, Length 1,523 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-202ENST00000449223 RALGAPBQ86X10 1494 aa27.55■■■□□ 2
RPS28-202ENST00000449223 CHGAP10645 457 aaKnown RBP27.55■■■□□ 2
RPS28-202ENST00000449223 TRPM1Q7Z4N2 1603 aa27.55■■■□□ 2
RPS28-202ENST00000449223 KIAA1210Q9ULL0 1709 aa27.52■■■□□ 2
RPS28-202ENST00000449223 ZNF326Q5BKZ1 582 aaKnown RBP27.52■■■□□ 2
RPS28-202ENST00000449223 KDM2AQ9Y2K7 1162 aa27.51■■■□□ 2
RPS28-202ENST00000449223 CEP170BQ9Y4F5 1589 aaPredicted RBP27.51■■□□□ 1.99
RPS28-202ENST00000449223 STAG3Q9UJ98 1225 aa27.48■■□□□ 1.99
RPS28-202ENST00000449223 PIK3C2GO75747 1445 aa27.48■■□□□ 1.99
RPS28-202ENST00000449223 KDM4FA0A1W2PPD8 638 aa27.46■■□□□ 1.99
RPS28-202ENST00000449223 SLIT1O75093 1534 aa27.46■■□□□ 1.99
RPS28-202ENST00000449223 LAMC1P11047 1609 aa27.46■■□□□ 1.99
RPS28-202ENST00000449223 VGFO15240 615 aaPredicted RBP27.46■■□□□ 1.99
RPS28-202ENST00000449223 GPRASP1Q5JY77 1395 aa27.45■■□□□ 1.99
RPS28-202ENST00000449223 ARHGAP23Q9P227 1491 aa27.45■■□□□ 1.98
RPS28-202ENST00000449223 RIMS2Q9UQ26 1411 aa27.45■■□□□ 1.98
RPS28-202ENST00000449223 TMEM2Q9UHN6 1383 aa27.44■■□□□ 1.98
RPS28-202ENST00000449223 ADGRF5Q8IZF2 1346 aa27.44■■□□□ 1.98
RPS28-202ENST00000449223 PLPPR3Q6T4P5 718 aa27.41■■□□□ 1.98
RPS28-202ENST00000449223 ABCF1Q8NE71 845 aaKnown RBP eCLIP27.39■■□□□ 1.98
RPS28-202ENST00000449223 SETBP1Q9Y6X0 1596 aa27.38■■□□□ 1.97
RPS28-202ENST00000449223 THEMISQ8N1K5 641 aaPredicted RBP27.38■■□□□ 1.97
RPS28-202ENST00000449223 HDGFP51858 240 aaKnown RBP27.37■■□□□ 1.97
RPS28-202ENST00000449223 ROCK2O75116 1388 aaKnown RBP27.37■■□□□ 1.97
RPS28-202ENST00000449223 C14orf93Q9H972 538 aaKnown RBP27.33■■□□□ 1.97
RPS28-202ENST00000449223 NRXN3Q9Y4C0 1643 aa27.33■■□□□ 1.97
RPS28-202ENST00000449223 ADGRB1O14514 1584 aa27.32■■□□□ 1.96
RPS28-202ENST00000449223 SETD1AO15047 1707 aaKnown RBP27.31■■□□□ 1.96
RPS28-202ENST00000449223 NBPF1Q3BBV0 1214 aa27.31■■□□□ 1.96
RPS28-202ENST00000449223 IQGAP1P46940 1657 aa27.3■■□□□ 1.96
RPS28-202ENST00000449223 CARD11Q9BXL7 1154 aa27.29■■□□□ 1.96
RPS28-202ENST00000449223 ALKQ9UM73 1620 aa27.29■■□□□ 1.96
RPS28-202ENST00000449223 PLEKHG1Q9ULL1 1385 aa27.28■■□□□ 1.96
RPS28-202ENST00000449223 CFAP70Q5T0N1 1121 aa27.28■■□□□ 1.96
RPS28-202ENST00000449223 NUTM2DQ5VT03 806 aaPredicted RBP27.28■■□□□ 1.96
RPS28-202ENST00000449223 EIF4G2P78344 907 aaKnown RBP eCLIP27.27■■□□□ 1.96
RPS28-202ENST00000449223 SCAF11Q99590 1463 aaKnown RBP27.27■■□□□ 1.96
RPS28-202ENST00000449223 USP47Q96K76 1375 aa27.27■■□□□ 1.96
RPS28-202ENST00000449223 LTKP29376 864 aa27.26■■□□□ 1.95
RPS28-202ENST00000449223 EID1Q9Y6B2 187 aa27.25■■□□□ 1.95
RPS28-202ENST00000449223 ASXL1Q8IXJ9 1541 aa27.25■■□□□ 1.95
RPS28-202ENST00000449223 ZNF316A6NFI3 1004 aaPredicted RBP27.23■■□□□ 1.95
RPS28-202ENST00000449223 TXNDC2Q86VQ3 553 aa27.22■■□□□ 1.95
RPS28-202ENST00000449223 MED14O60244 1454 aa27.22■■□□□ 1.95
RPS28-202ENST00000449223 POLR1AO95602 1720 aaPredicted RBP27.21■■□□□ 1.95
RPS28-202ENST00000449223 DIP2AQ14689 1571 aa27.21■■□□□ 1.95
RPS28-202ENST00000449223 HSPA5P11021 654 aaKnown RBP27.21■■□□□ 1.95
RPS28-202ENST00000449223 ADAMTS13Q76LX8 1427 aa27.2■■□□□ 1.94
RPS28-202ENST00000449223 LMTK3Q96Q04 1460 aa27.18■■□□□ 1.94
RPS28-202ENST00000449223 ANKLE2Q86XL3 938 aa27.16■■□□□ 1.94
RPS28-202ENST00000449223 EIF3AQ14152 1382 aaKnown RBP27.14■■□□□ 1.94
RPS28-202ENST00000449223 ARHGEF28Q8N1W1 1705 aaKnown RBP27.13■■□□□ 1.93
RPS28-202ENST00000449223 YTHDC2Q9H6S0 1430 aaKnown RBP27.12■■□□□ 1.93
RPS28-202ENST00000449223 KNDC1Q76NI1 1749 aa27.11■■□□□ 1.93
RPS28-202ENST00000449223 DLC1Q96QB1 1528 aa27.1■■□□□ 1.93
RPS28-202ENST00000449223 TMEM132EQ6IEE7 984 aa27.1■■□□□ 1.93
RPS28-202ENST00000449223 ST20-MTHFSA0A0A6YYL1 179 aa27.09■■□□□ 1.93
RPS28-202ENST00000449223 TBX22Q9Y458 520 aa27.09■■□□□ 1.93
RPS28-202ENST00000449223 METP08581 1390 aa27.08■■□□□ 1.93
RPS28-202ENST00000449223 LRPPRCP42704 1394 aaKnown RBP27.08■■□□□ 1.93
RPS28-202ENST00000449223 TECPR2O15040 1411 aa27.07■■□□□ 1.92
RPS28-202ENST00000449223 ABCC11Q96J66 1382 aa27.06■■□□□ 1.92
RPS28-202ENST00000449223 SBNO2Q9Y2G9 1366 aa27.06■■□□□ 1.92
RPS28-202ENST00000449223 HIRIP3Q9BW71 556 aaPredicted RBP27.06■■□□□ 1.92
RPS28-202ENST00000449223 NPHP4O75161 1426 aaPredicted RBP27.06■■□□□ 1.92
RPS28-202ENST00000449223 PIK3R4Q99570 1358 aa27.06■■□□□ 1.92
RPS28-202ENST00000449223 TESK2Q96S53 571 aa27.04■■□□□ 1.92
RPS28-202ENST00000449223 CPS1P31327 1500 aa27.04■■□□□ 1.92
RPS28-202ENST00000449223 QRICH2Q9H0J4 1663 aa27.02■■□□□ 1.92
RPS28-202ENST00000449223 BCANQ96GW7 911 aa27.01■■□□□ 1.91
RPS28-202ENST00000449223 TRAK1Q9UPV9 953 aa27.01■■□□□ 1.91
RPS28-202ENST00000449223 XRN1Q8IZH2 1706 aaKnown RBP27■■□□□ 1.91
RPS28-202ENST00000449223 SLC24A1O60721 1099 aa27■■□□□ 1.91
RPS28-202ENST00000449223 SENP3Q9H4L4 574 aaPredicted RBP27■■□□□ 1.91
RPS28-202ENST00000449223 CENPJQ9HC77 1338 aaPredicted RBP26.99■■□□□ 1.91
RPS28-202ENST00000449223 SIRT1Q96EB6 747 aa26.99■■□□□ 1.91
RPS28-202ENST00000449223 SLC26A8Q96RN1 970 aa26.99■■□□□ 1.91
RPS28-202ENST00000449223 STRCQ7RTU9 1775 aa26.98■■□□□ 1.91
RPS28-202ENST00000449223 FAM135BQ49AJ0 1406 aa26.98■■□□□ 1.91
RPS28-202ENST00000449223 PTPRUQ92729 1446 aa26.98■■□□□ 1.91
RPS28-202ENST00000449223 CHD2O14647 1828 aaKnown RBP26.97■■□□□ 1.91
RPS28-202ENST00000449223 NCKAP5LQ9HCH0 1330 aa26.97■■□□□ 1.91
RPS28-202ENST00000449223 C11orf95C9JLR9 678 aaPredicted RBP26.95■■□□□ 1.91
RPS28-202ENST00000449223 PTCH1Q13635 1447 aa26.95■■□□□ 1.91
RPS28-202ENST00000449223 WASHC2AQ641Q2 1341 aa26.95■■□□□ 1.91
RPS28-202ENST00000449223 CCDC7Q96M83 1385 aa26.95■■□□□ 1.9
RPS28-202ENST00000449223 HSPA2P54652 639 aa26.95■■□□□ 1.9
RPS28-202ENST00000449223 STK26Q9P289 416 aa26.93■■□□□ 1.9
RPS28-202ENST00000449223 KIF7Q2M1P5 1343 aa26.92■■□□□ 1.9
RPS28-202ENST00000449223 NWD1Q149M9 1564 aa26.92■■□□□ 1.9
RPS28-202ENST00000449223 TMF1P82094 1093 aa26.9■■□□□ 1.9
RPS28-202ENST00000449223 DISP3Q9P2K9 1392 aa26.9■■□□□ 1.9
RPS28-202ENST00000449223 PRAM1Q96QH2 718 aa26.88■■□□□ 1.89
RPS28-202ENST00000449223 ROBO2Q9HCK4 1378 aa26.88■■□□□ 1.89
RPS28-202ENST00000449223 AMOTL2Q9Y2J4 779 aa26.87■■□□□ 1.89
RPS28-202ENST00000449223 TULP4Q9NRJ4 1543 aa26.85■■□□□ 1.89
RPS28-202ENST00000449223 ADGRB2O60241 1585 aa26.84■■□□□ 1.89
RPS28-202ENST00000449223 PLEKHH1Q9ULM0 1364 aa26.84■■□□□ 1.89
RPS28-202ENST00000449223 CDCA8Q53HL2 280 aa26.84■■□□□ 1.89
RPS28-202ENST00000449223 POGKQ9P215 609 aa26.84■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms