RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 RGS17Q9UGC6 210 aaPredicted RBP20.37■□□□□ 0.85
HMGB3-204ENST00000448905 SLAIN2Q9P270 581 aa20.35■□□□□ 0.85
HMGB3-204ENST00000448905 TBX22Q9Y458 520 aa20.35■□□□□ 0.85
HMGB3-204ENST00000448905 RPRD2Q5VT52 1461 aaKnown RBP20.35■□□□□ 0.85
HMGB3-204ENST00000448905 MSH6P52701 1360 aa20.33■□□□□ 0.84
HMGB3-204ENST00000448905 ITGAEP38570 1179 aa20.31■□□□□ 0.84
HMGB3-204ENST00000448905 C14orf37Q86TY3 774 aa20.31■□□□□ 0.84
HMGB3-204ENST00000448905 PLEKHG1Q9ULL1 1385 aa20.31■□□□□ 0.84
HMGB3-204ENST00000448905 ROCK1Q13464 1354 aa20.29■□□□□ 0.84
HMGB3-204ENST00000448905 RIMS2Q9UQ26 1411 aa20.28■□□□□ 0.84
HMGB3-204ENST00000448905 TET3O43151 1660 aa20.28■□□□□ 0.84
HMGB3-204ENST00000448905 NUP155O75694 1391 aa20.27■□□□□ 0.84
HMGB3-204ENST00000448905 NUTM2DQ5VT03 806 aaPredicted RBP20.26■□□□□ 0.83
HMGB3-204ENST00000448905 ADGRB3O60242 1522 aa20.26■□□□□ 0.83
HMGB3-204ENST00000448905 KDM5AP29375 1690 aaKnown RBP20.26■□□□□ 0.83
HMGB3-204ENST00000448905 ATF3P18847 181 aa20.25■□□□□ 0.83
HMGB3-204ENST00000448905 POTEAQ6S8J7 498 aa20.25■□□□□ 0.83
HMGB3-204ENST00000448905 C19orf44Q9H6X5 657 aa20.25■□□□□ 0.83
HMGB3-204ENST00000448905 NKTRP30414 1462 aaKnown RBP20.24■□□□□ 0.83
HMGB3-204ENST00000448905 CADPS2Q86UW7 1296 aa20.24■□□□□ 0.83
HMGB3-204ENST00000448905 NCOA3Q9Y6Q9 1424 aa20.24■□□□□ 0.83
HMGB3-204ENST00000448905 ROBO1Q9Y6N7 1651 aa20.23■□□□□ 0.83
HMGB3-204ENST00000448905 ZFYVE9O95405 1425 aa20.23■□□□□ 0.83
HMGB3-204ENST00000448905 MYO5BQ9ULV0 1848 aa20.21■□□□□ 0.83
HMGB3-204ENST00000448905 PPARGC1BQ86YN6 1023 aaKnown RBP20.2■□□□□ 0.82
HMGB3-204ENST00000448905 AMOTL2Q9Y2J4 779 aa20.2■□□□□ 0.82
HMGB3-204ENST00000448905 PIK3R4Q99570 1358 aa20.2■□□□□ 0.82
HMGB3-204ENST00000448905 ZNF326Q5BKZ1 582 aaKnown RBP20.19■□□□□ 0.82
HMGB3-204ENST00000448905 JCADQ9P266 1359 aa20.18■□□□□ 0.82
HMGB3-204ENST00000448905 GCC2Q8IWJ2 1684 aa20.14■□□□□ 0.81
HMGB3-204ENST00000448905 NWD1Q149M9 1564 aa20.14■□□□□ 0.81
HMGB3-204ENST00000448905 MEX3CQ5U5Q3 659 aaKnown RBP20.14■□□□□ 0.81
HMGB3-204ENST00000448905 CHD2O14647 1828 aaKnown RBP20.13■□□□□ 0.81
HMGB3-204ENST00000448905 PHLPP1O60346 1717 aa20.13■□□□□ 0.81
HMGB3-204ENST00000448905 SPATA31A6Q5VVP1 1343 aa20.12■□□□□ 0.81
HMGB3-204ENST00000448905 ADAMTS13Q76LX8 1427 aa20.11■□□□□ 0.81
HMGB3-204ENST00000448905 TMEM131LA2VDJ0 1609 aa20.1■□□□□ 0.81
HMGB3-204ENST00000448905 ZNF772Q68DY9 489 aaPredicted RBP20.09■□□□□ 0.81
HMGB3-204ENST00000448905 UNC13BO14795 1591 aa20.07■□□□□ 0.8
HMGB3-204ENST00000448905 SETD1AO15047 1707 aaKnown RBP20.07■□□□□ 0.8
HMGB3-204ENST00000448905 BRINP3Q76B58 766 aa20.06■□□□□ 0.8
HMGB3-204ENST00000448905 TRIM52Q96A61 297 aa20.06■□□□□ 0.8
HMGB3-204ENST00000448905 VGFO15240 615 aaPredicted RBP20.05■□□□□ 0.8
HMGB3-204ENST00000448905 E9PCH4 1651 aa20.04■□□□□ 0.8
HMGB3-204ENST00000448905 LRRC59Q96AG4 307 aaKnown RBP20.03■□□□□ 0.8
HMGB3-204ENST00000448905 DIP2AQ14689 1571 aa20.03■□□□□ 0.8
HMGB3-204ENST00000448905 COL16A1Q07092 1604 aaPredicted RBP20.02■□□□□ 0.79
HMGB3-204ENST00000448905 TRPM2O94759 1503 aa20.02■□□□□ 0.79
HMGB3-204ENST00000448905 NUTM2BA6NNL0 878 aaPredicted RBP20.01■□□□□ 0.79
HMGB3-204ENST00000448905 NUTM2EB1AL46 878 aaPredicted RBP20.01■□□□□ 0.79
HMGB3-204ENST00000448905 NUTM2AQ8IVF1 878 aaPredicted RBP20.01■□□□□ 0.79
HMGB3-204ENST00000448905 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.01■□□□□ 0.79
HMGB3-204ENST00000448905 IQGAP3Q86VI3 1631 aa20.01■□□□□ 0.79
HMGB3-204ENST00000448905 PTPRUQ92729 1446 aa20.01■□□□□ 0.79
HMGB3-204ENST00000448905 LRP6O75581 1613 aa20■□□□□ 0.79
HMGB3-204ENST00000448905 METP08581 1390 aa19.99■□□□□ 0.79
HMGB3-204ENST00000448905 DCCP43146 1447 aa19.99■□□□□ 0.79
HMGB3-204ENST00000448905 RXRBP28702 533 aa19.98■□□□□ 0.79
HMGB3-204ENST00000448905 SLC4A1APQ9BWU0 796 aaKnown RBP19.98■□□□□ 0.79
HMGB3-204ENST00000448905 RPGRIP1LQ68CZ1 1315 aa19.98■□□□□ 0.79
HMGB3-204ENST00000448905 NAIPQ13075 1403 aa19.93■□□□□ 0.78
HMGB3-204ENST00000448905 RRBP1Q9P2E9 1410 aaKnown RBP19.93■□□□□ 0.78
HMGB3-204ENST00000448905 AHDC1Q5TGY3 1603 aaPredicted RBP19.91■□□□□ 0.78
HMGB3-204ENST00000448905 DDX17Q92841 729 aaKnown RBP19.9■□□□□ 0.78
HMGB3-204ENST00000448905 SETD5Q9C0A6 1442 aa19.9■□□□□ 0.78
HMGB3-204ENST00000448905 SETBP1Q9Y6X0 1596 aa19.9■□□□□ 0.78
HMGB3-204ENST00000448905 MST1RQ04912 1400 aa19.89■□□□□ 0.77
HMGB3-204ENST00000448905 UPF1Q92900 1129 aaKnown RBP eCLIP19.89■□□□□ 0.77
HMGB3-204ENST00000448905 SHPRHQ149N8 1683 aa19.88■□□□□ 0.77
HMGB3-204ENST00000448905 AFF2P51816 1311 aa19.88■□□□□ 0.77
HMGB3-204ENST00000448905 C8orf37Q96NL8 207 aa19.88■□□□□ 0.77
HMGB3-204ENST00000448905 QTRT2Q9H974 415 aaKnown RBP19.88■□□□□ 0.77
HMGB3-204ENST00000448905 NRXN3Q9Y4C0 1643 aa19.87■□□□□ 0.77
HMGB3-204ENST00000448905 ADGRL3Q9HAR2 1447 aa19.87■□□□□ 0.77
HMGB3-204ENST00000448905 NGLY1Q96IV0 654 aa19.87■□□□□ 0.77
HMGB3-204ENST00000448905 HFM1A2PYH4 1435 aa19.85■□□□□ 0.77
HMGB3-204ENST00000448905 RBM6P78332 1123 aaKnown RBP19.84■□□□□ 0.77
HMGB3-204ENST00000448905 ORAI2Q96SN7 254 aa19.84■□□□□ 0.77
HMGB3-204ENST00000448905 ASXL1Q8IXJ9 1541 aa19.84■□□□□ 0.77
HMGB3-204ENST00000448905 SPHKAPQ2M3C7 1700 aa19.83■□□□□ 0.77
HMGB3-204ENST00000448905 XRN1Q8IZH2 1706 aaKnown RBP19.83■□□□□ 0.77
HMGB3-204ENST00000448905 ADAMTS2O95450 1211 aa19.83■□□□□ 0.77
HMGB3-204ENST00000448905 ACIN1Q9UKV3 1341 aaKnown RBP19.82■□□□□ 0.76
HMGB3-204ENST00000448905 C1orf167Q5SNV9 1468 aa19.82■□□□□ 0.76
HMGB3-204ENST00000448905 RGL3Q3MIN7 710 aa19.82■□□□□ 0.76
HMGB3-204ENST00000448905 ESCO1Q5FWF5 840 aa19.81■□□□□ 0.76
HMGB3-204ENST00000448905 ROBO2Q9HCK4 1378 aa19.81■□□□□ 0.76
HMGB3-204ENST00000448905 FOXD1Q16676 465 aa19.8■□□□□ 0.76
HMGB3-204ENST00000448905 NEXMIFQ5QGS0 1516 aa19.8■□□□□ 0.76
HMGB3-204ENST00000448905 PNPLA6Q8IY17 1366 aa19.8■□□□□ 0.76
HMGB3-204ENST00000448905 SOS2Q07890 1332 aaPredicted RBP19.79■□□□□ 0.76
HMGB3-204ENST00000448905 PTCH1Q13635 1447 aa19.79■□□□□ 0.76
HMGB3-204ENST00000448905 MPHOSPH9Q99550 1183 aa19.79■□□□□ 0.76
HMGB3-204ENST00000448905 STK26Q9P289 416 aa19.78■□□□□ 0.76
HMGB3-204ENST00000448905 CLTCL1P53675 1640 aa19.77■□□□□ 0.76
HMGB3-204ENST00000448905 NHSL1Q5SYE7 1610 aa19.77■□□□□ 0.76
HMGB3-204ENST00000448905 USP21Q9UK80 565 aa19.77■□□□□ 0.76
HMGB3-204ENST00000448905 NPHP3Q7Z494 1330 aa19.76■□□□□ 0.75
HMGB3-204ENST00000448905 CDK12Q9NYV4 1490 aaPredicted RBP19.76■□□□□ 0.75
HMGB3-204ENST00000448905 CCDC144AA2RUR9 1427 aa19.76■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 274.1 ms