RNA–Protein interactions for RNA: ENST00000448078.1

USP49-205, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 3

Gene USP49, Length 480 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-205ENST00000448078 MMRN1Q13201 1228 aa10.96□□□□□ -0.65
USP49-205ENST00000448078 FAM98CQ17RN3 349 aaKnown RBP10.96□□□□□ -0.65
USP49-205ENST00000448078 FANCD2Q9BXW9 1451 aa10.95□□□□□ -0.66
USP49-205ENST00000448078 SLC4A3P48751 1232 aa10.95□□□□□ -0.66
USP49-205ENST00000448078 LAPTM4BQ86VI4 370 aa10.95□□□□□ -0.66
USP49-205ENST00000448078 FAM161AQ3B820 660 aa10.94□□□□□ -0.66
USP49-205ENST00000448078 FAM198AQ9UFP1 575 aa10.94□□□□□ -0.66
USP49-205ENST00000448078 BHMG1C9JSJ3 638 aaPredicted RBP10.93□□□□□ -0.66
USP49-205ENST00000448078 ZFRQ96KR1 1074 aaKnown RBP10.93□□□□□ -0.66
USP49-205ENST00000448078 MROH2BQ7Z745 1585 aa10.93□□□□□ -0.66
USP49-205ENST00000448078 PTPN5P54829 565 aa10.92□□□□□ -0.66
USP49-205ENST00000448078 OATP04181 439 aa10.91□□□□□ -0.66
USP49-205ENST00000448078 FECHP22830 423 aa10.91□□□□□ -0.66
USP49-205ENST00000448078 LRCH3Q96II8 777 aa10.91□□□□□ -0.66
USP49-205ENST00000448078 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.9□□□□□ -0.66
USP49-205ENST00000448078 ZC3H15Q8WU90 426 aaKnown RBP10.89□□□□□ -0.67
USP49-205ENST00000448078 ADGRG1Q9Y653 693 aa10.89□□□□□ -0.67
USP49-205ENST00000448078 GPR37O15354 613 aa10.88□□□□□ -0.67
USP49-205ENST00000448078 TTC13Q8NBP0 860 aa10.88□□□□□ -0.67
USP49-205ENST00000448078 BCAMP50895 628 aa10.87□□□□□ -0.67
USP49-205ENST00000448078 MAP2K5Q13163 448 aa10.87□□□□□ -0.67
USP49-205ENST00000448078 SAMD7Q7Z3H4 446 aa10.87□□□□□ -0.67
USP49-205ENST00000448078 C3orf80F5H4A9 247 aa10.86□□□□□ -0.67
USP49-205ENST00000448078 DNAJB2P25686 324 aa10.86□□□□□ -0.67
USP49-205ENST00000448078 RIMBP3CA6NJZ7 1639 aa10.86□□□□□ -0.67
USP49-205ENST00000448078 RIMBP3BA6NNM3 1639 aa10.86□□□□□ -0.67
USP49-205ENST00000448078 RIMBP3Q9UFD9 1639 aa10.86□□□□□ -0.67
USP49-205ENST00000448078 CFTRP13569 1480 aa10.86□□□□□ -0.67
USP49-205ENST00000448078 ARHGEF11O15085 1522 aa10.84□□□□□ -0.67
USP49-205ENST00000448078 RCCD1A6NED2 376 aa10.84□□□□□ -0.67
USP49-205ENST00000448078 SWT1Q5T5J6 900 aaKnown RBP10.84□□□□□ -0.67
USP49-205ENST00000448078 THSD4Q6ZMP0 1018 aa10.84□□□□□ -0.67
USP49-205ENST00000448078 HCSTQ9UBK5 93 aa10.84□□□□□ -0.67
USP49-205ENST00000448078 HPS5Q9UPZ3 1129 aa10.84□□□□□ -0.67
USP49-205ENST00000448078 MINK1Q8N4C8 1332 aaPredicted RBP10.84□□□□□ -0.67
USP49-205ENST00000448078 PPP4CP60510 307 aa10.83□□□□□ -0.68
USP49-205ENST00000448078 METTL3Q86U44 580 aaKnown RBP10.83□□□□□ -0.68
USP49-205ENST00000448078 EYA1Q99502 592 aa10.83□□□□□ -0.68
USP49-205ENST00000448078 IFT140Q96RY7 1462 aa10.82□□□□□ -0.68
USP49-205ENST00000448078 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.82□□□□□ -0.68
USP49-205ENST00000448078 SOWAHBA6NEL2 793 aa10.82□□□□□ -0.68
USP49-205ENST00000448078 SLF2Q8IX21 1173 aa10.82□□□□□ -0.68
USP49-205ENST00000448078 IRF6O14896 467 aa10.81□□□□□ -0.68
USP49-205ENST00000448078 PXYLP1Q8TE99 480 aa10.81□□□□□ -0.68
USP49-205ENST00000448078 CCDC102AQ96A19 550 aa10.81□□□□□ -0.68
USP49-205ENST00000448078 ZMYND10O75800 440 aa10.8□□□□□ -0.68
USP49-205ENST00000448078 RSPH4AQ5TD94 716 aa10.8□□□□□ -0.68
USP49-205ENST00000448078 BARGINQ6ZT62 677 aa10.8□□□□□ -0.68
USP49-205ENST00000448078 TSR3Q9UJK0 312 aaKnown RBP10.8□□□□□ -0.68
USP49-205ENST00000448078 URB2Q14146 1524 aaKnown RBP10.79□□□□□ -0.68
USP49-205ENST00000448078 NLRP7Q8WX94 980 aa10.79□□□□□ -0.68
USP49-205ENST00000448078 NECTIN2Q92692 538 aa10.79□□□□□ -0.68
USP49-205ENST00000448078 TTLL12Q14166 644 aaPredicted RBP10.77□□□□□ -0.69
USP49-205ENST00000448078 RDH13Q8NBN7 331 aa10.77□□□□□ -0.69
USP49-205ENST00000448078 TMEM134Q9H6X4 195 aa10.77□□□□□ -0.69
USP49-205ENST00000448078 ABCC8Q09428 1581 aa10.77□□□□□ -0.69
USP49-205ENST00000448078 MDM2Q00987 491 aaPredicted RBP10.76□□□□□ -0.69
USP49-205ENST00000448078 WBP1LQ9NX94 342 aa10.76□□□□□ -0.69
USP49-205ENST00000448078 DDX11L8A8MPP1 907 aa10.75□□□□□ -0.69
USP49-205ENST00000448078 CHMP7Q8WUX9 453 aaPredicted RBP10.75□□□□□ -0.69
USP49-205ENST00000448078 TPRNQ4KMQ1 711 aa10.74□□□□□ -0.69
USP49-205ENST00000448078 SLC24A3Q9HC58 644 aa10.74□□□□□ -0.69
USP49-205ENST00000448078 RSF1Q96T23 1441 aaPredicted RBP10.74□□□□□ -0.69
USP49-205ENST00000448078 WIZO95785 1651 aa10.73□□□□□ -0.69
USP49-205ENST00000448078 SULF1Q8IWU6 871 aa10.73□□□□□ -0.69
USP49-205ENST00000448078 AK7Q96M32 723 aa10.73□□□□□ -0.69
USP49-205ENST00000448078 ZNF608Q9ULD9 1512 aaPredicted RBP10.73□□□□□ -0.69
USP49-205ENST00000448078 DAXXQ9UER7 740 aaPredicted RBP10.72□□□□□ -0.69
USP49-205ENST00000448078 NYAP1Q6ZVC0 841 aa10.71□□□□□ -0.69
USP49-205ENST00000448078 PHOX2BQ99453 314 aa10.71□□□□□ -0.69
USP49-205ENST00000448078 CLCN1P35523 988 aa10.7□□□□□ -0.7
USP49-205ENST00000448078 KMT5BQ4FZB7 885 aa10.7□□□□□ -0.7
USP49-205ENST00000448078 PRR14Q9BWN1 585 aa10.7□□□□□ -0.7
USP49-205ENST00000448078 CFHP08603 1231 aa10.69□□□□□ -0.7
USP49-205ENST00000448078 GPCPD1Q9NPB8 672 aa10.68□□□□□ -0.7
USP49-205ENST00000448078 AQRO60306 1485 aaKnown RBP eCLIP10.68□□□□□ -0.7
USP49-205ENST00000448078 ARAP1Q96P48 1450 aa10.68□□□□□ -0.7
USP49-205ENST00000448078 TOPBP1Q92547 1522 aa10.65□□□□□ -0.7
USP49-205ENST00000448078 TRIM66O15016 1216 aa10.64□□□□□ -0.71
USP49-205ENST00000448078 TOP2AP11388 1531 aaKnown RBP10.63□□□□□ -0.71
USP49-205ENST00000448078 APLP1P51693 650 aa10.63□□□□□ -0.71
USP49-205ENST00000448078 PLA2G2EQ9NZK7 142 aa10.63□□□□□ -0.71
USP49-205ENST00000448078 PCDHB3Q9Y5E6 796 aa10.63□□□□□ -0.71
USP49-205ENST00000448078 COPS2P61201 443 aa10.62□□□□□ -0.71
USP49-205ENST00000448078 SLC10A3P09131 477 aa10.61□□□□□ -0.71
USP49-205ENST00000448078 SOGA1O94964 1423 aa10.6□□□□□ -0.71
USP49-205ENST00000448078 PDE4DQ08499 809 aa10.6□□□□□ -0.71
USP49-205ENST00000448078 GIGYF2Q6Y7W6 1299 aaKnown RBP10.6□□□□□ -0.71
USP49-205ENST00000448078 TDRD9Q8NDG6 1382 aaKnown RBP10.6□□□□□ -0.71
USP49-205ENST00000448078 AMHR2Q16671 573 aa10.59□□□□□ -0.71
USP49-205ENST00000448078 NUTM1Q86Y26 1132 aa10.59□□□□□ -0.71
USP49-205ENST00000448078 EIF4G3O43432 1585 aaKnown RBP10.59□□□□□ -0.71
USP49-205ENST00000448078 CCDC88BA6NC98 1476 aa10.58□□□□□ -0.72
USP49-205ENST00000448078 SSTR3P32745 418 aaPredicted RBP10.58□□□□□ -0.72
USP49-205ENST00000448078 KCNC4Q03721 635 aa10.58□□□□□ -0.72
USP49-205ENST00000448078 GRIPAP1Q4V328 841 aa10.58□□□□□ -0.72
USP49-205ENST00000448078 MTRQ99707 1265 aa10.57□□□□□ -0.72
USP49-205ENST00000448078 FAM217BQ9NTX9 383 aaPredicted RBP10.57□□□□□ -0.72
USP49-205ENST00000448078 ATP1B4Q9UN42 357 aaPredicted RBP10.57□□□□□ -0.72
USP49-205ENST00000448078 DNMBPQ6XZF7 1577 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms