RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 DISP3Q9P2K9 1392 aa31.5■■■□□ 2.63
SDC1-205ENST00000447124 TMEM131LA2VDJ0 1609 aa31.49■■■□□ 2.63
SDC1-205ENST00000447124 RIMS2Q9UQ26 1411 aa31.49■■■□□ 2.63
SDC1-205ENST00000447124 BCANQ96GW7 911 aa31.48■■■□□ 2.63
SDC1-205ENST00000447124 NAIPQ13075 1403 aa31.48■■■□□ 2.63
SDC1-205ENST00000447124 MYO5BQ9ULV0 1848 aa31.47■■■□□ 2.63
SDC1-205ENST00000447124 HDGFP51858 240 aaKnown RBP31.46■■■□□ 2.63
SDC1-205ENST00000447124 NUTM2DQ5VT03 806 aaPredicted RBP31.45■■■□□ 2.63
SDC1-205ENST00000447124 PLEKHG1Q9ULL1 1385 aa31.43■■■□□ 2.62
SDC1-205ENST00000447124 PPP1R15AO75807 674 aaPredicted RBP31.42■■■□□ 2.62
SDC1-205ENST00000447124 RBM33Q96EV2 1170 aaKnown RBP31.41■■■□□ 2.62
SDC1-205ENST00000447124 ILDR2Q71H61 639 aa31.4■■■□□ 2.62
SDC1-205ENST00000447124 PROSER2Q86WR7 435 aaPredicted RBP31.4■■■□□ 2.62
SDC1-205ENST00000447124 ABCF1Q8NE71 845 aaKnown RBP eCLIP31.4■■■□□ 2.62
SDC1-205ENST00000447124 TMEM94Q12767 1356 aa31.39■■■□□ 2.62
SDC1-205ENST00000447124 XIRP1Q702N8 1843 aaKnown RBP31.38■■■□□ 2.61
SDC1-205ENST00000447124 TBX22Q9Y458 520 aa31.37■■■□□ 2.61
SDC1-205ENST00000447124 HFM1A2PYH4 1435 aa31.33■■■□□ 2.61
SDC1-205ENST00000447124 TRIM52Q96A61 297 aa31.32■■■□□ 2.6
SDC1-205ENST00000447124 ADAMTS13Q76LX8 1427 aa31.32■■■□□ 2.6
SDC1-205ENST00000447124 NWD1Q149M9 1564 aa31.27■■■□□ 2.6
SDC1-205ENST00000447124 SPHKAPQ2M3C7 1700 aa31.25■■■□□ 2.59
SDC1-205ENST00000447124 NKTRP30414 1462 aaKnown RBP31.24■■■□□ 2.59
SDC1-205ENST00000447124 CHD2O14647 1828 aaKnown RBP31.24■■■□□ 2.59
SDC1-205ENST00000447124 ZNF326Q5BKZ1 582 aaKnown RBP31.23■■■□□ 2.59
SDC1-205ENST00000447124 SLC4A1APQ9BWU0 796 aaKnown RBP31.21■■■□□ 2.59
SDC1-205ENST00000447124 FAM135BQ49AJ0 1406 aa31.2■■■□□ 2.59
SDC1-205ENST00000447124 PIK3R4Q99570 1358 aa31.17■■■□□ 2.58
SDC1-205ENST00000447124 CLTCL1P53675 1640 aa31.17■■■□□ 2.58
SDC1-205ENST00000447124 TRPM2O94759 1503 aa31.17■■■□□ 2.58
SDC1-205ENST00000447124 PTPRUQ92729 1446 aa31.16■■■□□ 2.58
SDC1-205ENST00000447124 AMOTL2Q9Y2J4 779 aa31.16■■■□□ 2.58
SDC1-205ENST00000447124 MSH6P52701 1360 aa31.15■■■□□ 2.58
SDC1-205ENST00000447124 FOXD1Q16676 465 aa31.14■■■□□ 2.58
SDC1-205ENST00000447124 SLAIN2Q9P270 581 aa31.13■■■□□ 2.57
SDC1-205ENST00000447124 DIP2AQ14689 1571 aa31.12■■■□□ 2.57
SDC1-205ENST00000447124 MED1Q15648 1581 aaPredicted RBP31.1■■■□□ 2.57
SDC1-205ENST00000447124 NCOA3Q9Y6Q9 1424 aa31.1■■■□□ 2.57
SDC1-205ENST00000447124 NRXN3Q9Y4C0 1643 aa31.09■■■□□ 2.57
SDC1-205ENST00000447124 METP08581 1390 aa31.07■■■□□ 2.56
SDC1-205ENST00000447124 NEXMIFQ5QGS0 1516 aa31.07■■■□□ 2.56
SDC1-205ENST00000447124 SETBP1Q9Y6X0 1596 aa31.06■■■□□ 2.56
SDC1-205ENST00000447124 SOCS7O14512 581 aa31.06■■■□□ 2.56
SDC1-205ENST00000447124 C14orf37Q86TY3 774 aa31.06■■■□□ 2.56
SDC1-205ENST00000447124 MPHOSPH9Q99550 1183 aa31.06■■■□□ 2.56
SDC1-205ENST00000447124 C19orf44Q9H6X5 657 aa31.05■■■□□ 2.56
SDC1-205ENST00000447124 KIF1BO60333 1816 aa31.02■■■□□ 2.56
SDC1-205ENST00000447124 ROBO1Q9Y6N7 1651 aa31.02■■■□□ 2.56
SDC1-205ENST00000447124 VGFO15240 615 aaPredicted RBP31■■■□□ 2.55
SDC1-205ENST00000447124 RPGRIP1LQ68CZ1 1315 aa30.99■■■□□ 2.55
SDC1-205ENST00000447124 CADPS2Q86UW7 1296 aa30.98■■■□□ 2.55
SDC1-205ENST00000447124 ATF3P18847 181 aa30.97■■■□□ 2.55
SDC1-205ENST00000447124 PHF23Q9BUL5 403 aaPredicted RBP30.94■■■□□ 2.54
SDC1-205ENST00000447124 SETD5Q9C0A6 1442 aa30.94■■■□□ 2.54
SDC1-205ENST00000447124 SIPA1L2Q9P2F8 1722 aaPredicted RBP30.94■■■□□ 2.54
SDC1-205ENST00000447124 XRN1Q8IZH2 1706 aaKnown RBP30.93■■■□□ 2.54
SDC1-205ENST00000447124 RGL3Q3MIN7 710 aa30.9■■■□□ 2.54
SDC1-205ENST00000447124 RGS17Q9UGC6 210 aaPredicted RBP30.9■■■□□ 2.54
SDC1-205ENST00000447124 CCDC144AA2RUR9 1427 aa30.88■■■□□ 2.53
SDC1-205ENST00000447124 ADGRF5Q8IZF2 1346 aa30.87■■■□□ 2.53
SDC1-205ENST00000447124 SPATA31E1Q6ZUB1 1445 aa30.86■■■□□ 2.53
SDC1-205ENST00000447124 BRINP3Q76B58 766 aa30.85■■■□□ 2.53
SDC1-205ENST00000447124 ACIN1Q9UKV3 1341 aaKnown RBP30.84■■■□□ 2.53
SDC1-205ENST00000447124 RAB3GAP2Q9H2M9 1393 aa30.83■■■□□ 2.53
SDC1-205ENST00000447124 PPLO60437 1756 aa30.82■■■□□ 2.52
SDC1-205ENST00000447124 DCCP43146 1447 aa30.81■■■□□ 2.52
SDC1-205ENST00000447124 PHLPP1O60346 1717 aa30.81■■■□□ 2.52
SDC1-205ENST00000447124 ROBO2Q9HCK4 1378 aa30.81■■■□□ 2.52
SDC1-205ENST00000447124 JCADQ9P266 1359 aa30.8■■■□□ 2.52
SDC1-205ENST00000447124 SETD1AO15047 1707 aaKnown RBP30.8■■■□□ 2.52
SDC1-205ENST00000447124 MST1RQ04912 1400 aa30.79■■■□□ 2.52
SDC1-205ENST00000447124 ADGRL3Q9HAR2 1447 aa30.78■■■□□ 2.52
SDC1-205ENST00000447124 COL16A1Q07092 1604 aaPredicted RBP30.76■■■□□ 2.52
SDC1-205ENST00000447124 PTCH1Q13635 1447 aa30.74■■■□□ 2.51
SDC1-205ENST00000447124 ANKRD30BQ9BXX2 1392 aa30.74■■■□□ 2.51
SDC1-205ENST00000447124 AHDC1Q5TGY3 1603 aaPredicted RBP30.73■■■□□ 2.51
SDC1-205ENST00000447124 PRAG1Q86YV5 1406 aa30.72■■■□□ 2.51
SDC1-205ENST00000447124 POTEAQ6S8J7 498 aa30.71■■■□□ 2.51
SDC1-205ENST00000447124 DDX17Q92841 729 aaKnown RBP30.7■■■□□ 2.51
SDC1-205ENST00000447124 TMEM132EQ6IEE7 984 aa30.69■■■□□ 2.5
SDC1-205ENST00000447124 ASXL1Q8IXJ9 1541 aa30.68■■■□□ 2.5
SDC1-205ENST00000447124 NALCNQ8IZF0 1738 aa30.68■■■□□ 2.5
SDC1-205ENST00000447124 STK26Q9P289 416 aa30.68■■■□□ 2.5
SDC1-205ENST00000447124 HRCP23327 699 aa30.66■■■□□ 2.5
SDC1-205ENST00000447124 C1orf167Q5SNV9 1468 aa30.65■■■□□ 2.5
SDC1-205ENST00000447124 WAPLQ7Z5K2 1190 aa30.65■■■□□ 2.5
SDC1-205ENST00000447124 SPATA31A6Q5VVP1 1343 aa30.65■■■□□ 2.5
SDC1-205ENST00000447124 IFT172Q9UG01 1749 aa30.64■■■□□ 2.5
SDC1-205ENST00000447124 ORAI2Q96SN7 254 aa30.64■■■□□ 2.5
SDC1-205ENST00000447124 PIK3C2GO75747 1445 aa30.64■■■□□ 2.49
SDC1-205ENST00000447124 C14orf93Q9H972 538 aaKnown RBP30.63■■■□□ 2.49
SDC1-205ENST00000447124 LRPPRCP42704 1394 aaKnown RBP30.63■■■□□ 2.49
SDC1-205ENST00000447124 LRP6O75581 1613 aa30.62■■■□□ 2.49
SDC1-205ENST00000447124 ABCC11Q96J66 1382 aa30.61■■■□□ 2.49
SDC1-205ENST00000447124 CFAP70Q5T0N1 1121 aa30.59■■■□□ 2.49
SDC1-205ENST00000447124 LRRC59Q96AG4 307 aaKnown RBP30.59■■■□□ 2.49
SDC1-205ENST00000447124 TECPR2O15040 1411 aa30.57■■■□□ 2.48
SDC1-205ENST00000447124 PLEKHH1Q9ULM0 1364 aa30.56■■■□□ 2.48
SDC1-205ENST00000447124 NHSL1Q5SYE7 1610 aa30.55■■■□□ 2.48
SDC1-205ENST00000447124 NUTM2BA6NNL0 878 aaPredicted RBP30.55■■■□□ 2.48
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms