RNA–Protein interactions for RNA: ENST00000438571.5

GTF3A-204, Transcript of general transcription factor IIIA, humanhuman

TSL 5

Gene GTF3A, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3A-204ENST00000438571 SLC26A8Q96RN1 970 aa28.06■■■□□ 2.08
GTF3A-204ENST00000438571 ZFYVE9O95405 1425 aa28.06■■■□□ 2.08
GTF3A-204ENST00000438571 ROCK1Q13464 1354 aa28.03■■■□□ 2.08
GTF3A-204ENST00000438571 SLC52A1Q9NWF4 448 aa28.03■■■□□ 2.08
GTF3A-204ENST00000438571 TMEM94Q12767 1356 aa28.01■■■□□ 2.07
GTF3A-204ENST00000438571 RBM33Q96EV2 1170 aaKnown RBP28■■■□□ 2.07
GTF3A-204ENST00000438571 ROBO1Q9Y6N7 1651 aa28■■■□□ 2.07
GTF3A-204ENST00000438571 RIMS2Q9UQ26 1411 aa27.99■■■□□ 2.07
GTF3A-204ENST00000438571 ITGAEP38570 1179 aa27.98■■■□□ 2.07
GTF3A-204ENST00000438571 NKTRP30414 1462 aaKnown RBP27.97■■■□□ 2.07
GTF3A-204ENST00000438571 KCNA6P17658 529 aa27.97■■■□□ 2.07
GTF3A-204ENST00000438571 SPHKAPQ2M3C7 1700 aa27.97■■■□□ 2.07
GTF3A-204ENST00000438571 PLEKHG1Q9ULL1 1385 aa27.94■■■□□ 2.06
GTF3A-204ENST00000438571 BCANQ96GW7 911 aa27.91■■■□□ 2.06
GTF3A-204ENST00000438571 CHGAP10645 457 aaKnown RBP27.9■■■□□ 2.06
GTF3A-204ENST00000438571 PROSER2Q86WR7 435 aaPredicted RBP27.9■■■□□ 2.06
GTF3A-204ENST00000438571 NUP155O75694 1391 aa27.89■■■□□ 2.06
GTF3A-204ENST00000438571 NUTM2DQ5VT03 806 aaPredicted RBP27.88■■■□□ 2.05
GTF3A-204ENST00000438571 FAM135BQ49AJ0 1406 aa27.87■■■□□ 2.05
GTF3A-204ENST00000438571 ADAMTS13Q76LX8 1427 aa27.87■■■□□ 2.05
GTF3A-204ENST00000438571 PPP1R15AO75807 674 aaPredicted RBP27.86■■■□□ 2.05
GTF3A-204ENST00000438571 NRXN3Q9Y4C0 1643 aa27.85■■■□□ 2.05
GTF3A-204ENST00000438571 PHLPP1O60346 1717 aa27.85■■■□□ 2.05
GTF3A-204ENST00000438571 DIP2AQ14689 1571 aa27.85■■■□□ 2.05
GTF3A-204ENST00000438571 PHF23Q9BUL5 403 aaPredicted RBP27.84■■■□□ 2.05
GTF3A-204ENST00000438571 CLTCL1P53675 1640 aa27.81■■■□□ 2.04
GTF3A-204ENST00000438571 SIPA1L2Q9P2F8 1722 aaPredicted RBP27.81■■■□□ 2.04
GTF3A-204ENST00000438571 RRBP1Q9P2E9 1410 aaKnown RBP27.79■■■□□ 2.04
GTF3A-204ENST00000438571 MSH6P52701 1360 aa27.79■■■□□ 2.04
GTF3A-204ENST00000438571 TRPM2O94759 1503 aa27.77■■■□□ 2.04
GTF3A-204ENST00000438571 KIF1BO60333 1816 aa27.76■■■□□ 2.04
GTF3A-204ENST00000438571 TBX22Q9Y458 520 aa27.76■■■□□ 2.03
GTF3A-204ENST00000438571 XRN1Q8IZH2 1706 aaKnown RBP27.75■■■□□ 2.03
GTF3A-204ENST00000438571 HDGFP51858 240 aaKnown RBP27.75■■■□□ 2.03
GTF3A-204ENST00000438571 ABCF1Q8NE71 845 aaKnown RBP eCLIP27.75■■■□□ 2.03
GTF3A-204ENST00000438571 PTPRUQ92729 1446 aa27.75■■■□□ 2.03
GTF3A-204ENST00000438571 COL16A1Q07092 1604 aaPredicted RBP27.74■■■□□ 2.03
GTF3A-204ENST00000438571 RGS17Q9UGC6 210 aaPredicted RBP27.73■■■□□ 2.03
GTF3A-204ENST00000438571 SETBP1Q9Y6X0 1596 aa27.73■■■□□ 2.03
GTF3A-204ENST00000438571 NAIPQ13075 1403 aa27.72■■■□□ 2.03
GTF3A-204ENST00000438571 NEXMIFQ5QGS0 1516 aa27.7■■■□□ 2.02
GTF3A-204ENST00000438571 SLAIN2Q9P270 581 aa27.68■■■□□ 2.02
GTF3A-204ENST00000438571 PIK3R4Q99570 1358 aa27.68■■■□□ 2.02
GTF3A-204ENST00000438571 NCOA3Q9Y6Q9 1424 aa27.66■■■□□ 2.02
GTF3A-204ENST00000438571 SETD1AO15047 1707 aaKnown RBP27.64■■■□□ 2.02
GTF3A-204ENST00000438571 NALCNQ8IZF0 1738 aa27.62■■■□□ 2.01
GTF3A-204ENST00000438571 C14orf37Q86TY3 774 aa27.62■■■□□ 2.01
GTF3A-204ENST00000438571 AMOTL2Q9Y2J4 779 aa27.62■■■□□ 2.01
GTF3A-204ENST00000438571 AHDC1Q5TGY3 1603 aaPredicted RBP27.62■■■□□ 2.01
GTF3A-204ENST00000438571 ZNF326Q5BKZ1 582 aaKnown RBP27.6■■■□□ 2.01
GTF3A-204ENST00000438571 SHPRHQ149N8 1683 aa27.59■■■□□ 2.01
GTF3A-204ENST00000438571 METP08581 1390 aa27.59■■■□□ 2.01
GTF3A-204ENST00000438571 PPLO60437 1756 aa27.58■■■□□ 2.01
GTF3A-204ENST00000438571 HFM1A2PYH4 1435 aa27.58■■■□□ 2
GTF3A-204ENST00000438571 LRP6O75581 1613 aa27.56■■■□□ 2
GTF3A-204ENST00000438571 POTEAQ6S8J7 498 aa27.56■■■□□ 2
GTF3A-204ENST00000438571 JCADQ9P266 1359 aa27.56■■■□□ 2
GTF3A-204ENST00000438571 C19orf44Q9H6X5 657 aa27.55■■■□□ 2
GTF3A-204ENST00000438571 NHSL1Q5SYE7 1610 aa27.55■■■□□ 2
GTF3A-204ENST00000438571 CADPS2Q86UW7 1296 aa27.52■■■□□ 2
GTF3A-204ENST00000438571 ATF3P18847 181 aa27.51■■□□□ 1.99
GTF3A-204ENST00000438571 ASXL1Q8IXJ9 1541 aa27.51■■□□□ 1.99
GTF3A-204ENST00000438571 DCCP43146 1447 aa27.5■■□□□ 1.99
GTF3A-204ENST00000438571 MST1RQ04912 1400 aa27.5■■□□□ 1.99
GTF3A-204ENST00000438571 TRIM52Q96A61 297 aa27.49■■□□□ 1.99
GTF3A-204ENST00000438571 BRINP3Q76B58 766 aa27.47■■□□□ 1.99
GTF3A-204ENST00000438571 IFT172Q9UG01 1749 aa27.45■■□□□ 1.99
GTF3A-204ENST00000438571 ADGRL3Q9HAR2 1447 aa27.45■■□□□ 1.98
GTF3A-204ENST00000438571 FOXD1Q16676 465 aa27.41■■□□□ 1.98
GTF3A-204ENST00000438571 SLC4A1APQ9BWU0 796 aaKnown RBP27.41■■□□□ 1.98
GTF3A-204ENST00000438571 SPATA31A6Q5VVP1 1343 aa27.39■■□□□ 1.97
GTF3A-204ENST00000438571 PTCH1Q13635 1447 aa27.37■■□□□ 1.97
GTF3A-204ENST00000438571 ROBO2Q9HCK4 1378 aa27.35■■□□□ 1.97
GTF3A-204ENST00000438571 DDX17Q92841 729 aaKnown RBP27.35■■□□□ 1.97
GTF3A-204ENST00000438571 LAMC1P11047 1609 aa27.34■■□□□ 1.97
GTF3A-204ENST00000438571 SETD5Q9C0A6 1442 aa27.33■■□□□ 1.97
GTF3A-204ENST00000438571 PRAG1Q86YV5 1406 aa27.32■■□□□ 1.96
GTF3A-204ENST00000438571 C1orf167Q5SNV9 1468 aa27.32■■□□□ 1.96
GTF3A-204ENST00000438571 VGFO15240 615 aaPredicted RBP27.31■■□□□ 1.96
GTF3A-204ENST00000438571 MEX3CQ5U5Q3 659 aaKnown RBP27.31■■□□□ 1.96
GTF3A-204ENST00000438571 RPGRIP1LQ68CZ1 1315 aa27.28■■□□□ 1.96
GTF3A-204ENST00000438571 NUTM2BA6NNL0 878 aaPredicted RBP27.28■■□□□ 1.96
GTF3A-204ENST00000438571 NUTM2EB1AL46 878 aaPredicted RBP27.28■■□□□ 1.96
GTF3A-204ENST00000438571 NUTM2AQ8IVF1 878 aaPredicted RBP27.28■■□□□ 1.96
GTF3A-204ENST00000438571 KNDC1Q76NI1 1749 aa27.27■■□□□ 1.96
GTF3A-204ENST00000438571 SPATA31E1Q6ZUB1 1445 aa27.27■■□□□ 1.96
GTF3A-204ENST00000438571 CCDC144AA2RUR9 1427 aa27.26■■□□□ 1.95
GTF3A-204ENST00000438571 ADGRF5Q8IZF2 1346 aa27.25■■□□□ 1.95
GTF3A-204ENST00000438571 PNPLA6Q8IY17 1366 aa27.24■■□□□ 1.95
GTF3A-204ENST00000438571 CDC42BPGQ6DT37 1551 aa27.23■■□□□ 1.95
GTF3A-204ENST00000438571 ORAI2Q96SN7 254 aa27.21■■□□□ 1.95
GTF3A-204ENST00000438571 MPHOSPH9Q99550 1183 aa27.21■■□□□ 1.95
GTF3A-204ENST00000438571 RGL3Q3MIN7 710 aa27.2■■□□□ 1.94
GTF3A-204ENST00000438571 ZNF772Q68DY9 489 aaPredicted RBP27.19■■□□□ 1.94
GTF3A-204ENST00000438571 LRRC59Q96AG4 307 aaKnown RBP27.18■■□□□ 1.94
GTF3A-204ENST00000438571 AFF2P51816 1311 aa27.17■■□□□ 1.94
GTF3A-204ENST00000438571 RGPD8O14715 1765 aaPredicted RBP27.17■■□□□ 1.94
GTF3A-204ENST00000438571 COL22A1Q8NFW1 1626 aaPredicted RBP27.16■■□□□ 1.94
GTF3A-204ENST00000438571 FMN2Q9NZ56 1722 aa27.16■■□□□ 1.94
GTF3A-204ENST00000438571 PIK3C2GO75747 1445 aa27.16■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms