RNA–Protein interactions for RNA: ENST00000435607.3

SCN4A-201, Transcript of sodium voltage-gated channel alpha subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCN4A, Length 7,805 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4A-201ENST00000435607 PDS5BQ9NTI5 1447 aa13.64□□□□□ -0.23
SCN4A-201ENST00000435607 HSP90AB2PQ58FF8 381 aa13.64□□□□□ -0.23
SCN4A-201ENST00000435607 IFIT2P09913 472 aaKnown RBP13.64□□□□□ -0.23
SCN4A-201ENST00000435607 RUFY1Q96T51 708 aa13.64□□□□□ -0.23
SCN4A-201ENST00000435607 NACADO15069 1562 aa13.63□□□□□ -0.23
SCN4A-201ENST00000435607 CCER2I3L3R5 266 aa13.63□□□□□ -0.23
SCN4A-201ENST00000435607 OFD1O75665 1012 aa13.63□□□□□ -0.23
SCN4A-201ENST00000435607 NAP1L1P55209 391 aaKnown RBP13.63□□□□□ -0.23
SCN4A-201ENST00000435607 AK7Q96M32 723 aa13.63□□□□□ -0.23
SCN4A-201ENST00000435607 ZRSR2Q15696 482 aaKnown RBP13.62□□□□□ -0.23
SCN4A-201ENST00000435607 G3BP1Q13283 466 aaKnown RBP eCLIP13.62□□□□□ -0.23
SCN4A-201ENST00000435607 CUX2O14529 1486 aa13.62□□□□□ -0.23
SCN4A-201ENST00000435607 DDX11L8A8MPP1 907 aa13.62□□□□□ -0.23
SCN4A-201ENST00000435607 VGFO15240 615 aaPredicted RBP13.62□□□□□ -0.23
SCN4A-201ENST00000435607 ROCK1Q13464 1354 aa13.61□□□□□ -0.23
SCN4A-201ENST00000435607 TNIKQ9UKE5 1360 aa13.61□□□□□ -0.23
SCN4A-201ENST00000435607 EVC2Q86UK5 1308 aa13.61□□□□□ -0.23
SCN4A-201ENST00000435607 RAPGEF4Q8WZA2 1011 aa13.61□□□□□ -0.23
SCN4A-201ENST00000435607 SLC3A2P08195 630 aaKnown RBP13.6□□□□□ -0.23
SCN4A-201ENST00000435607 ARID3AQ99856 593 aa13.6□□□□□ -0.23
SCN4A-201ENST00000435607 CCDC27Q2M243 656 aa13.6□□□□□ -0.23
SCN4A-201ENST00000435607 PPP1R1BQ9UD71 204 aaPredicted RBP13.6□□□□□ -0.23
SCN4A-201ENST00000435607 EIF2S2P20042 333 aaKnown RBP13.6□□□□□ -0.23
SCN4A-201ENST00000435607 CGNL1Q0VF96 1302 aa13.59□□□□□ -0.23
SCN4A-201ENST00000435607 RALYLQ86SE5 291 aaKnown RBP13.59□□□□□ -0.23
SCN4A-201ENST00000435607 WDHD1O75717 1129 aaPredicted RBP13.59□□□□□ -0.23
SCN4A-201ENST00000435607 NUTM2DQ5VT03 806 aaPredicted RBP13.59□□□□□ -0.23
SCN4A-201ENST00000435607 HSPA5P11021 654 aaKnown RBP13.59□□□□□ -0.23
SCN4A-201ENST00000435607 REC8O95072 547 aa13.59□□□□□ -0.23
SCN4A-201ENST00000435607 ACBD3Q9H3P7 528 aa13.59□□□□□ -0.23
SCN4A-201ENST00000435607 HSP90AB4PQ58FF6 505 aa13.58□□□□□ -0.24
SCN4A-201ENST00000435607 SETD5Q9C0A6 1442 aa13.58□□□□□ -0.24
SCN4A-201ENST00000435607 SYCP1Q15431 976 aa13.58□□□□□ -0.24
SCN4A-201ENST00000435607 TEX35Q5T0J7 233 aa13.58□□□□□ -0.24
SCN4A-201ENST00000435607 CLUAP1Q96AJ1 413 aa13.57□□□□□ -0.24
SCN4A-201ENST00000435607 ANO2Q9NQ90 1003 aa13.57□□□□□ -0.24
SCN4A-201ENST00000435607 DCTN1Q14203 1278 aa13.57□□□□□ -0.24
SCN4A-201ENST00000435607 SKOR2Q2VWA4 1001 aaPredicted RBP13.57□□□□□ -0.24
SCN4A-201ENST00000435607 FMN1Q68DA7 1419 aa13.57□□□□□ -0.24
SCN4A-201ENST00000435607 TRIM21P19474 475 aaKnown RBP13.56□□□□□ -0.24
SCN4A-201ENST00000435607 PDE3BQ13370 1112 aa13.56□□□□□ -0.24
SCN4A-201ENST00000435607 SART3Q15020 963 aaKnown RBP13.56□□□□□ -0.24
SCN4A-201ENST00000435607 ANKRD45Q5TZF3 282 aa13.56□□□□□ -0.24
SCN4A-201ENST00000435607 TRAK1Q9UPV9 953 aa13.56□□□□□ -0.24
SCN4A-201ENST00000435607 FOXD4L5Q5VV16 416 aaPredicted RBP13.56□□□□□ -0.24
SCN4A-201ENST00000435607 FOXD4L4Q8WXT5 416 aaPredicted RBP13.56□□□□□ -0.24
SCN4A-201ENST00000435607 FOXD4L1Q9NU39 408 aa13.56□□□□□ -0.24
SCN4A-201ENST00000435607 HOMER1Q86YM7 354 aa13.55□□□□□ -0.24
SCN4A-201ENST00000435607 ERC2O15083 957 aa13.55□□□□□ -0.24
SCN4A-201ENST00000435607 DESP17661 470 aa13.55□□□□□ -0.24
SCN4A-201ENST00000435607 ANKRD18AQ8IVF6 992 aa13.55□□□□□ -0.24
SCN4A-201ENST00000435607 CDK5RAP3Q96JB5 506 aa13.54□□□□□ -0.24
SCN4A-201ENST00000435607 FYB1O15117 783 aa13.54□□□□□ -0.24
SCN4A-201ENST00000435607 BICD2Q8TD16 824 aa13.54□□□□□ -0.24
SCN4A-201ENST00000435607 CCDC146Q8IYE0 955 aa13.54□□□□□ -0.24
SCN4A-201ENST00000435607 DNAI2Q9GZS0 605 aa13.54□□□□□ -0.24
SCN4A-201ENST00000435607 NLRP13Q86W25 1043 aa13.54□□□□□ -0.24
SCN4A-201ENST00000435607 TBC1D2BQ9UPU7 963 aa13.54□□□□□ -0.24
SCN4A-201ENST00000435607 MPHOSPH9Q99550 1183 aa13.53□□□□□ -0.24
SCN4A-201ENST00000435607 KIF6Q6ZMV9 814 aa13.53□□□□□ -0.24
SCN4A-201ENST00000435607 CCDC18Q5T9S5 1454 aa13.53□□□□□ -0.24
SCN4A-201ENST00000435607 OLFM4Q6UX06 510 aa13.53□□□□□ -0.24
SCN4A-201ENST00000435607 RIC3Q7Z5B4 369 aa13.53□□□□□ -0.24
SCN4A-201ENST00000435607 TXLNAP40222 546 aa13.52□□□□□ -0.25
SCN4A-201ENST00000435607 CHMP5Q9NZZ3 219 aa13.52□□□□□ -0.25
SCN4A-201ENST00000435607 CCDC191Q8NCU4 936 aa13.51□□□□□ -0.25
SCN4A-201ENST00000435607 SASS6Q6UVJ0 657 aa13.51□□□□□ -0.25
SCN4A-201ENST00000435607 ZKSCAN2Q63HK3 967 aa13.51□□□□□ -0.25
SCN4A-201ENST00000435607 GNL3LQ9NVN8 582 aaKnown RBP13.51□□□□□ -0.25
SCN4A-201ENST00000435607 CCDC97Q96F63 343 aaPredicted RBP13.51□□□□□ -0.25
SCN4A-201ENST00000435607 DDX49Q9Y6V7 483 aaKnown RBP13.51□□□□□ -0.25
SCN4A-201ENST00000435607 HNRNPMP52272 730 aaKnown RBP eCLIP13.51□□□□□ -0.25
SCN4A-201ENST00000435607 WASHC4Q2M389 1173 aa13.51□□□□□ -0.25
SCN4A-201ENST00000435607 CCDC73Q6ZRK6 1079 aa13.51□□□□□ -0.25
SCN4A-201ENST00000435607 NAT10Q9H0A0 1025 aaKnown RBP13.5□□□□□ -0.25
SCN4A-201ENST00000435607 ZNF592Q92610 1267 aa13.5□□□□□ -0.25
SCN4A-201ENST00000435607 SLC4A3P48751 1232 aa13.5□□□□□ -0.25
SCN4A-201ENST00000435607 API5Q9BZZ5 524 aaKnown RBP13.5□□□□□ -0.25
SCN4A-201ENST00000435607 MPHOSPH10O00566 681 aaKnown RBP13.49□□□□□ -0.25
SCN4A-201ENST00000435607 DEKP35659 375 aaKnown RBP13.49□□□□□ -0.25
SCN4A-201ENST00000435607 NEUROD6Q96NK8 337 aa13.49□□□□□ -0.25
SCN4A-201ENST00000435607 KRT18P05783 430 aaKnown RBP13.48□□□□□ -0.25
SCN4A-201ENST00000435607 FKBP5Q13451 457 aaPredicted RBP13.48□□□□□ -0.25
SCN4A-201ENST00000435607 ELL2O00472 640 aaPredicted RBP13.48□□□□□ -0.25
SCN4A-201ENST00000435607 ARGLU1Q9NWB6 273 aaPredicted RBP13.48□□□□□ -0.25
SCN4A-201ENST00000435607 NEFHP12036 1026 aa13.48□□□□□ -0.25
SCN4A-201ENST00000435607 PPM1FP49593 454 aaPredicted RBP13.48□□□□□ -0.25
SCN4A-201ENST00000435607 HSP90B2PQ58FF3 399 aa13.48□□□□□ -0.25
SCN4A-201ENST00000435607 VSIG10Q8N0Z9 540 aa13.48□□□□□ -0.25
SCN4A-201ENST00000435607 CYB5RLQ6IPT4 315 aa13.48□□□□□ -0.25
SCN4A-201ENST00000435607 MAGEC2Q9UBF1 373 aaPredicted RBP13.48□□□□□ -0.25
SCN4A-201ENST00000435607 CCDC144AA2RUR9 1427 aa13.47□□□□□ -0.25
SCN4A-201ENST00000435607 NEBLO76041 1014 aa13.47□□□□□ -0.25
SCN4A-201ENST00000435607 NLRP2Q9NX02 1062 aa13.47□□□□□ -0.25
SCN4A-201ENST00000435607 ERLIN2O94905 339 aa13.47□□□□□ -0.25
SCN4A-201ENST00000435607 PDCL3Q9H2J4 239 aa13.47□□□□□ -0.25
SCN4A-201ENST00000435607 NINLQ9Y2I6 1382 aa13.47□□□□□ -0.25
SCN4A-201ENST00000435607 SOGA1O94964 1423 aa13.47□□□□□ -0.25
SCN4A-201ENST00000435607 BAZ1AQ9NRL2 1556 aaPredicted RBP13.47□□□□□ -0.25
SCN4A-201ENST00000435607 CAGE1Q8TC20 777 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms