RNA–Protein interactions for RNA: ENST00000430711.5

COL28A1-202, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 5

Gene COL28A1, Length 2,323 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-202ENST00000430711 ARID4BQ4LE39 1312 aaPredicted RBP9.63□□□□□ -0.87
COL28A1-202ENST00000430711 RCAN3Q9UKA8 241 aa9.63□□□□□ -0.87
COL28A1-202ENST00000430711 MAP3K4Q9Y6R4 1608 aa9.63□□□□□ -0.87
COL28A1-202ENST00000430711 UNC13BO14795 1591 aa9.63□□□□□ -0.87
COL28A1-202ENST00000430711 ARHGAP5Q13017 1502 aa9.63□□□□□ -0.87
COL28A1-202ENST00000430711 MAGI2Q86UL8 1455 aa9.62□□□□□ -0.87
COL28A1-202ENST00000430711 KTN1Q86UP2 1357 aaKnown RBP9.61□□□□□ -0.87
COL28A1-202ENST00000430711 ADAMTSL3P82987 1691 aa9.61□□□□□ -0.87
COL28A1-202ENST00000430711 NLRP13Q86W25 1043 aa9.61□□□□□ -0.87
COL28A1-202ENST00000430711 RALBP1Q15311 655 aa9.6□□□□□ -0.87
COL28A1-202ENST00000430711 ERBINQ96RT1 1412 aa9.6□□□□□ -0.87
COL28A1-202ENST00000430711 CRBNQ96SW2 442 aa9.6□□□□□ -0.87
COL28A1-202ENST00000430711 GPRASP1Q5JY77 1395 aa9.6□□□□□ -0.87
COL28A1-202ENST00000430711 PLEKHH1Q9ULM0 1364 aa9.6□□□□□ -0.87
COL28A1-202ENST00000430711 IQGAP3Q86VI3 1631 aa9.6□□□□□ -0.87
COL28A1-202ENST00000430711 PTPRMP28827 1452 aa9.6□□□□□ -0.87
COL28A1-202ENST00000430711 IPO9Q96P70 1041 aaKnown RBP9.59□□□□□ -0.87
COL28A1-202ENST00000430711 ADAMTS8Q9UP79 889 aa9.59□□□□□ -0.87
COL28A1-202ENST00000430711 BLMP54132 1417 aaPredicted RBP9.59□□□□□ -0.87
COL28A1-202ENST00000430711 TRAPPC8Q9Y2L5 1435 aa9.59□□□□□ -0.87
COL28A1-202ENST00000430711 LAS1LQ9Y4W2 734 aaKnown RBP9.59□□□□□ -0.87
COL28A1-202ENST00000430711 WDR7Q9Y4E6 1490 aa9.58□□□□□ -0.88
COL28A1-202ENST00000430711 RNF17Q9BXT8 1623 aaKnown RBP9.58□□□□□ -0.88
COL28A1-202ENST00000430711 SPINK5Q9NQ38 1064 aaPredicted RBP9.57□□□□□ -0.88
COL28A1-202ENST00000430711 UGGT1Q9NYU2 1555 aa9.57□□□□□ -0.88
COL28A1-202ENST00000430711 PDE4AP27815 886 aa9.57□□□□□ -0.88
COL28A1-202ENST00000430711 MADDQ8WXG6 1647 aa9.56□□□□□ -0.88
COL28A1-202ENST00000430711 MYOM1P52179 1685 aa9.56□□□□□ -0.88
COL28A1-202ENST00000430711 MAST1Q9Y2H9 1570 aa9.56□□□□□ -0.88
COL28A1-202ENST00000430711 CCDC146Q8IYE0 955 aa9.56□□□□□ -0.88
COL28A1-202ENST00000430711 PLXNC1O60486 1568 aa9.56□□□□□ -0.88
COL28A1-202ENST00000430711 SLC4A3P48751 1232 aa9.55□□□□□ -0.88
COL28A1-202ENST00000430711 AFAP1Q8N556 730 aa9.55□□□□□ -0.88
COL28A1-202ENST00000430711 ASXL2Q76L83 1435 aa9.55□□□□□ -0.88
COL28A1-202ENST00000430711 LAMC1P11047 1609 aa9.55□□□□□ -0.88
COL28A1-202ENST00000430711 IQGAP1P46940 1657 aa9.55□□□□□ -0.88
COL28A1-202ENST00000430711 ZMYM4Q5VZL5 1548 aa9.55□□□□□ -0.88
COL28A1-202ENST00000430711 ABCC2Q92887 1545 aa9.55□□□□□ -0.88
COL28A1-202ENST00000430711 ANP32AP39687 249 aaKnown RBP9.54□□□□□ -0.88
COL28A1-202ENST00000430711 BACH2Q9BYV9 841 aa9.54□□□□□ -0.88
COL28A1-202ENST00000430711 CLTCL1P53675 1640 aa9.54□□□□□ -0.88
COL28A1-202ENST00000430711 PPP2R1AP30153 589 aa9.54□□□□□ -0.88
COL28A1-202ENST00000430711 ATP10AO60312 1499 aa9.53□□□□□ -0.88
COL28A1-202ENST00000430711 AMER1Q5JTC6 1135 aaPredicted RBP9.53□□□□□ -0.88
COL28A1-202ENST00000430711 ZCCHC11Q5TAX3 1644 aaKnown RBP9.53□□□□□ -0.88
COL28A1-202ENST00000430711 U3KPZ7 1027 aaPredicted RBP9.53□□□□□ -0.88
COL28A1-202ENST00000430711 DUSP27Q5VZP5 1158 aa9.52□□□□□ -0.89
COL28A1-202ENST00000430711 ZBTB47Q9UFB7 747 aaPredicted RBP9.52□□□□□ -0.89
COL28A1-202ENST00000430711 ABCC1P33527 1531 aa9.51□□□□□ -0.89
COL28A1-202ENST00000430711 DUOX2Q9NRD8 1548 aa9.51□□□□□ -0.89
COL28A1-202ENST00000430711 SPHKAPQ2M3C7 1700 aa9.51□□□□□ -0.89
COL28A1-202ENST00000430711 ZNF521Q96K83 1311 aa9.5□□□□□ -0.89
COL28A1-202ENST00000430711 TMF1P82094 1093 aa9.5□□□□□ -0.89
COL28A1-202ENST00000430711 EIF2AK4Q9P2K8 1649 aaKnown RBP9.5□□□□□ -0.89
COL28A1-202ENST00000430711 KDM2BQ8NHM5 1336 aa9.5□□□□□ -0.89
COL28A1-202ENST00000430711 IL27Q8NEV9 243 aa9.5□□□□□ -0.89
COL28A1-202ENST00000430711 UHRF1BP1LA0JNW5 1464 aa9.49□□□□□ -0.89
COL28A1-202ENST00000430711 BCAR3O75815 825 aa9.49□□□□□ -0.89
COL28A1-202ENST00000430711 CARD14Q9BXL6 1004 aa9.49□□□□□ -0.89
COL28A1-202ENST00000430711 ZFYVE16Q7Z3T8 1539 aa9.49□□□□□ -0.89
COL28A1-202ENST00000430711 CEP152O94986 1710 aa9.48□□□□□ -0.89
COL28A1-202ENST00000430711 PLCH2O75038 1416 aa9.48□□□□□ -0.89
COL28A1-202ENST00000430711 TCERG1O14776 1098 aaKnown RBP9.48□□□□□ -0.89
COL28A1-202ENST00000430711 MYCNP04198 464 aaPredicted RBP9.48□□□□□ -0.89
COL28A1-202ENST00000430711 CFAP70Q5T0N1 1121 aa9.48□□□□□ -0.89
COL28A1-202ENST00000430711 IQSEC2Q5JU85 1478 aa9.48□□□□□ -0.89
COL28A1-202ENST00000430711 MROH2AA6NES4 1674 aa9.48□□□□□ -0.89
COL28A1-202ENST00000430711 ADGRF5Q8IZF2 1346 aa9.48□□□□□ -0.89
COL28A1-202ENST00000430711 TNNQ9UQP3 1299 aa9.48□□□□□ -0.89
COL28A1-202ENST00000430711 ATF5Q9Y2D1 282 aaPredicted RBP9.48□□□□□ -0.89
COL28A1-202ENST00000430711 PDE3BQ13370 1112 aa9.47□□□□□ -0.89
COL28A1-202ENST00000430711 TRPM2O94759 1503 aa9.47□□□□□ -0.89
COL28A1-202ENST00000430711 ABCA6Q8N139 1617 aa9.47□□□□□ -0.89
COL28A1-202ENST00000430711 SYNMO15061 1565 aa9.46□□□□□ -0.9
COL28A1-202ENST00000430711 APAF1O14727 1248 aa9.46□□□□□ -0.9
COL28A1-202ENST00000430711 RTN4Q9NQC3 1192 aaKnown RBP9.46□□□□□ -0.9
COL28A1-202ENST00000430711 CFAP65Q6ZU64 1925 aaKnown RBP9.46□□□□□ -0.9
COL28A1-202ENST00000430711 MROH1Q8NDA8 1641 aa9.46□□□□□ -0.9
COL28A1-202ENST00000430711 ERVK-7P63135 1459 aa9.46□□□□□ -0.9
COL28A1-202ENST00000430711 RGS3P49796 1198 aa9.45□□□□□ -0.9
COL28A1-202ENST00000430711 C8orf34Q49A92 452 aa9.45□□□□□ -0.9
COL28A1-202ENST00000430711 RSPH4AQ5TD94 716 aa9.45□□□□□ -0.9
COL28A1-202ENST00000430711 KNSTRNQ9Y448 316 aa9.45□□□□□ -0.9
COL28A1-202ENST00000430711 ASXL1Q8IXJ9 1541 aa9.45□□□□□ -0.9
COL28A1-202ENST00000430711 NEFMP07197 916 aa9.45□□□□□ -0.9
COL28A1-202ENST00000430711 TNNT2P45379 298 aaPredicted RBP9.44□□□□□ -0.9
COL28A1-202ENST00000430711 SCAF11Q99590 1463 aaKnown RBP9.44□□□□□ -0.9
COL28A1-202ENST00000430711 SPAG9O60271 1321 aaKnown RBP9.44□□□□□ -0.9
COL28A1-202ENST00000430711 DEPDC5O75140 1603 aa9.44□□□□□ -0.9
COL28A1-202ENST00000430711 IGHDP01880 384 aa9.44□□□□□ -0.9
COL28A1-202ENST00000430711 SLFN5Q08AF3 891 aa9.44□□□□□ -0.9
COL28A1-202ENST00000430711 RRP7AQ9Y3A4 280 aaKnown RBP9.44□□□□□ -0.9
COL28A1-202ENST00000430711 PTPRTO14522 1441 aa9.44□□□□□ -0.9
COL28A1-202ENST00000430711 WDR43Q15061 677 aaKnown RBP eCLIP9.43□□□□□ -0.9
COL28A1-202ENST00000430711 WASHC2CQ9Y4E1 1318 aa9.43□□□□□ -0.9
COL28A1-202ENST00000430711 KIF3BO15066 747 aa9.43□□□□□ -0.9
COL28A1-202ENST00000430711 EFCAB2Q5VUJ9 269 aa9.43□□□□□ -0.9
COL28A1-202ENST00000430711 SEC24BO95487 1268 aa9.42□□□□□ -0.9
COL28A1-202ENST00000430711 GOLGA2Q08379 1002 aa9.42□□□□□ -0.9
COL28A1-202ENST00000430711 ARAP3Q8WWN8 1544 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms