RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 SWT1Q5T5J6 900 aaKnown RBP12.82□□□□□ -0.36
CCDC88A-206ENST00000430086 SAMD7Q7Z3H4 446 aa12.82□□□□□ -0.36
CCDC88A-206ENST00000430086 REPIN1Q9BWE0 567 aaKnown RBP12.82□□□□□ -0.36
CCDC88A-206ENST00000430086 SPNS2Q8IVW8 549 aa12.81□□□□□ -0.36
CCDC88A-206ENST00000430086 ANKK1Q8NFD2 765 aa12.81□□□□□ -0.36
CCDC88A-206ENST00000430086 BRPF1P55201 1214 aaPredicted RBP12.8□□□□□ -0.36
CCDC88A-206ENST00000430086 WNT2BQ93097 391 aa12.8□□□□□ -0.36
CCDC88A-206ENST00000430086 GIGYF2Q6Y7W6 1299 aaKnown RBP12.79□□□□□ -0.36
CCDC88A-206ENST00000430086 LRCH3Q96II8 777 aa12.79□□□□□ -0.36
CCDC88A-206ENST00000430086 SOWAHBA6NEL2 793 aa12.78□□□□□ -0.36
CCDC88A-206ENST00000430086 SLF2Q8IX21 1173 aa12.78□□□□□ -0.36
CCDC88A-206ENST00000430086 FAM217BQ9NTX9 383 aaPredicted RBP12.78□□□□□ -0.36
CCDC88A-206ENST00000430086 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.78□□□□□ -0.36
CCDC88A-206ENST00000430086 MYT1LQ9UL68 1186 aa12.78□□□□□ -0.36
CCDC88A-206ENST00000430086 SLC4A3P48751 1232 aa12.77□□□□□ -0.37
CCDC88A-206ENST00000430086 NEUROD2Q15784 382 aa12.77□□□□□ -0.37
CCDC88A-206ENST00000430086 SULF1Q8IWU6 871 aa12.77□□□□□ -0.37
CCDC88A-206ENST00000430086 GPBP1L1Q9HC44 474 aaPredicted RBP12.76□□□□□ -0.37
CCDC88A-206ENST00000430086 KDM4CQ9H3R0 1056 aa12.75□□□□□ -0.37
CCDC88A-206ENST00000430086 SSTR3P32745 418 aaPredicted RBP12.74□□□□□ -0.37
CCDC88A-206ENST00000430086 RSPH4AQ5TD94 716 aa12.73□□□□□ -0.37
CCDC88A-206ENST00000430086 THSD4Q6ZMP0 1018 aa12.73□□□□□ -0.37
CCDC88A-206ENST00000430086 KCTD12Q96CX2 325 aaKnown RBP12.73□□□□□ -0.37
CCDC88A-206ENST00000430086 DDX11L8A8MPP1 907 aa12.72□□□□□ -0.37
CCDC88A-206ENST00000430086 BCAMP50895 628 aa12.72□□□□□ -0.37
CCDC88A-206ENST00000430086 NECTIN2Q92692 538 aa12.72□□□□□ -0.37
CCDC88A-206ENST00000430086 SLC10A3P09131 477 aa12.71□□□□□ -0.37
CCDC88A-206ENST00000430086 MS4A1P11836 297 aa12.71□□□□□ -0.37
CCDC88A-206ENST00000430086 CD46P15529 392 aa12.71□□□□□ -0.37
CCDC88A-206ENST00000430086 TSR3Q9UJK0 312 aaKnown RBP12.7□□□□□ -0.38
CCDC88A-206ENST00000430086 HPS5Q9UPZ3 1129 aa12.69□□□□□ -0.38
CCDC88A-206ENST00000430086 RNF40O75150 1001 aa12.68□□□□□ -0.38
CCDC88A-206ENST00000430086 PPP4CP60510 307 aa12.68□□□□□ -0.38
CCDC88A-206ENST00000430086 RDH13Q8NBN7 331 aa12.68□□□□□ -0.38
CCDC88A-206ENST00000430086 RNF166Q96A37 237 aaPredicted RBP12.68□□□□□ -0.38
CCDC88A-206ENST00000430086 MMRN1Q13201 1228 aa12.65□□□□□ -0.38
CCDC88A-206ENST00000430086 GCGRP47871 477 aa12.64□□□□□ -0.39
CCDC88A-206ENST00000430086 DDRGK1Q96HY6 314 aa12.64□□□□□ -0.39
CCDC88A-206ENST00000430086 BEGAINQ9BUH8 593 aa12.64□□□□□ -0.39
CCDC88A-206ENST00000430086 WBP1LQ9NX94 342 aa12.64□□□□□ -0.39
CCDC88A-206ENST00000430086 NYAP1Q6ZVC0 841 aa12.63□□□□□ -0.39
CCDC88A-206ENST00000430086 FAM117AQ9C073 453 aa12.63□□□□□ -0.39
CCDC88A-206ENST00000430086 CFHP08603 1231 aa12.62□□□□□ -0.39
CCDC88A-206ENST00000430086 PRR14Q9BWN1 585 aa12.62□□□□□ -0.39
CCDC88A-206ENST00000430086 KMT5BQ4FZB7 885 aa12.61□□□□□ -0.39
CCDC88A-206ENST00000430086 PTPN5P54829 565 aa12.6□□□□□ -0.39
CCDC88A-206ENST00000430086 HCSTQ9UBK5 93 aa12.59□□□□□ -0.39
CCDC88A-206ENST00000430086 PLEKHG3A1L390 1219 aa12.58□□□□□ -0.4
CCDC88A-206ENST00000430086 ACTN4O43707 911 aaKnown RBP12.58□□□□□ -0.4
CCDC88A-206ENST00000430086 APLP1P51693 650 aa12.58□□□□□ -0.4
CCDC88A-206ENST00000430086 KDM4AO75164 1064 aa12.57□□□□□ -0.4
CCDC88A-206ENST00000430086 USP46P62068 366 aa12.57□□□□□ -0.4
CCDC88A-206ENST00000430086 DIXDC1Q155Q3 683 aa12.57□□□□□ -0.4
CCDC88A-206ENST00000430086 NUTM1Q86Y26 1132 aa12.56□□□□□ -0.4
CCDC88A-206ENST00000430086 IL27Q8NEV9 243 aa12.56□□□□□ -0.4
CCDC88A-206ENST00000430086 SPIRE2Q8WWL2 714 aa12.56□□□□□ -0.4
CCDC88A-206ENST00000430086 TBC1D2Q9BYX2 928 aa12.54□□□□□ -0.4
CCDC88A-206ENST00000430086 RSPH6AQ9H0K4 717 aa12.53□□□□□ -0.4
CCDC88A-206ENST00000430086 ATP6V1AP38606 617 aa12.52□□□□□ -0.41
CCDC88A-206ENST00000430086 FUT2Q10981 343 aa12.52□□□□□ -0.41
CCDC88A-206ENST00000430086 GRIPAP1Q4V328 841 aa12.52□□□□□ -0.41
CCDC88A-206ENST00000430086 HOXA2O43364 376 aa12.5□□□□□ -0.41
CCDC88A-206ENST00000430086 GOPCQ9HD26 462 aa12.5□□□□□ -0.41
CCDC88A-206ENST00000430086 SH3D19Q5HYK7 790 aa12.49□□□□□ -0.41
CCDC88A-206ENST00000430086 MYSM1Q5VVJ2 828 aa12.49□□□□□ -0.41
CCDC88A-206ENST00000430086 PCDHB3Q9Y5E6 796 aa12.49□□□□□ -0.41
CCDC88A-206ENST00000430086 GJA5P36382 358 aa12.48□□□□□ -0.41
CCDC88A-206ENST00000430086 TMEM132AQ24JP5 1023 aa12.47□□□□□ -0.41
CCDC88A-206ENST00000430086 MORN1Q5T089 497 aa12.47□□□□□ -0.41
CCDC88A-206ENST00000430086 MOXD2PA6NHM9 499 aa12.46□□□□□ -0.41
CCDC88A-206ENST00000430086 SKIV2LQ15477 1246 aaKnown RBP12.46□□□□□ -0.41
CCDC88A-206ENST00000430086 SPTLC1O15269 473 aa12.45□□□□□ -0.42
CCDC88A-206ENST00000430086 PUS10Q3MIT2 529 aaKnown RBP12.45□□□□□ -0.42
CCDC88A-206ENST00000430086 RSBN1LQ6PCB5 846 aaPredicted RBP12.45□□□□□ -0.42
CCDC88A-206ENST00000430086 NDUFV2P19404 249 aa12.44□□□□□ -0.42
CCDC88A-206ENST00000430086 BLOC1S3Q6QNY0 202 aa12.44□□□□□ -0.42
CCDC88A-206ENST00000430086 RIC3Q7Z5B4 369 aa12.44□□□□□ -0.42
CCDC88A-206ENST00000430086 TUSC1Q2TAM9 212 aa12.43□□□□□ -0.42
CCDC88A-206ENST00000430086 NR1I2O75469 434 aa12.42□□□□□ -0.42
CCDC88A-206ENST00000430086 FDX1P10109 184 aa12.42□□□□□ -0.42
CCDC88A-206ENST00000430086 CLK2P49760 499 aaKnown RBP12.42□□□□□ -0.42
CCDC88A-206ENST00000430086 TJAP1Q5JTD0 557 aa12.42□□□□□ -0.42
CCDC88A-206ENST00000430086 HLA-CQ95604 372 aa12.42□□□□□ -0.42
CCDC88A-206ENST00000430086 MTRQ99707 1265 aa12.42□□□□□ -0.42
CCDC88A-206ENST00000430086 SLC27A5Q9Y2P5 690 aa12.42□□□□□ -0.42
CCDC88A-206ENST00000430086 SCUBE3Q8IX30 993 aa12.41□□□□□ -0.42
CCDC88A-206ENST00000430086 POLR3EQ9NVU0 708 aa12.41□□□□□ -0.42
CCDC88A-206ENST00000430086 COPS2P61201 443 aa12.4□□□□□ -0.42
CCDC88A-206ENST00000430086 IL21Q9HBE4 155 aa12.4□□□□□ -0.42
CCDC88A-206ENST00000430086 LIMD1Q9UGP4 676 aa12.4□□□□□ -0.42
CCDC88A-206ENST00000430086 SALL2Q9Y467 1007 aaPredicted RBP12.4□□□□□ -0.42
CCDC88A-206ENST00000430086 ITGBL1O95965 494 aaPredicted RBP12.39□□□□□ -0.43
CCDC88A-206ENST00000430086 GUCA2AQ02747 115 aa12.39□□□□□ -0.43
CCDC88A-206ENST00000430086 PCDHGC3Q9UN70 934 aa12.39□□□□□ -0.43
CCDC88A-206ENST00000430086 Q3C1V9 767 aa12.38□□□□□ -0.43
CCDC88A-206ENST00000430086 PCMTD1Q96MG8 357 aaPredicted RBP12.38□□□□□ -0.43
CCDC88A-206ENST00000430086 ZPR1O75312 459 aa12.37□□□□□ -0.43
CCDC88A-206ENST00000430086 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.37□□□□□ -0.43
CCDC88A-206ENST00000430086 PRPF38BQ5VTL8 546 aaKnown RBP12.36□□□□□ -0.43
CCDC88A-206ENST00000430086 PROCA1Q8NCQ7 364 aaPredicted RBP12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms