RNA–Protein interactions for RNA: ENST00000429544.6

MBD4-203, Transcript of methyl-CpG binding domain 4, DNA glycosylase, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MBD4, Length 2,478 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MBD4-203ENST00000429544 ADGRB3O60242 1522 aa22.03■■□□□ 1.12
MBD4-203ENST00000429544 PER1O15534 1290 aaPredicted RBP22.03■■□□□ 1.12
MBD4-203ENST00000429544 PNISRQ8TF01 805 aaKnown RBP22.03■■□□□ 1.12
MBD4-203ENST00000429544 PARD3Q8TEW0 1356 aa22.03■■□□□ 1.12
MBD4-203ENST00000429544 CAMSAP1Q5T5Y3 1602 aa22.02■■□□□ 1.12
MBD4-203ENST00000429544 GLI2P10070 1586 aa22.02■■□□□ 1.12
MBD4-203ENST00000429544 PANK3Q9H999 370 aa22.02■■□□□ 1.12
MBD4-203ENST00000429544 ADGRF5Q8IZF2 1346 aa22.01■■□□□ 1.11
MBD4-203ENST00000429544 WASHC2CQ9Y4E1 1318 aa22■■□□□ 1.11
MBD4-203ENST00000429544 CHGAP10645 457 aaKnown RBP21.99■■□□□ 1.11
MBD4-203ENST00000429544 EIF3AQ14152 1382 aaKnown RBP21.99■■□□□ 1.11
MBD4-203ENST00000429544 CFAP70Q5T0N1 1121 aa21.99■■□□□ 1.11
MBD4-203ENST00000429544 SIGLEC1Q9BZZ2 1709 aa21.98■■□□□ 1.11
MBD4-203ENST00000429544 PPLO60437 1756 aa21.97■■□□□ 1.11
MBD4-203ENST00000429544 NOS1P29475 1434 aa21.97■■□□□ 1.11
MBD4-203ENST00000429544 NRXN1Q9ULB1 1477 aa21.97■■□□□ 1.11
MBD4-203ENST00000429544 IRX6P78412 446 aaPredicted RBP21.97■■□□□ 1.11
MBD4-203ENST00000429544 CC2D1BQ5T0F9 858 aaKnown RBP21.97■■□□□ 1.11
MBD4-203ENST00000429544 LRPPRCP42704 1394 aaKnown RBP21.96■■□□□ 1.11
MBD4-203ENST00000429544 YEATS2Q9ULM3 1422 aa21.96■■□□□ 1.11
MBD4-203ENST00000429544 NLRP13Q86W25 1043 aa21.96■■□□□ 1.11
MBD4-203ENST00000429544 SYNMO15061 1565 aa21.94■■□□□ 1.1
MBD4-203ENST00000429544 DIP2BQ9P265 1576 aa21.94■■□□□ 1.1
MBD4-203ENST00000429544 MYOM1P52179 1685 aa21.94■■□□□ 1.1
MBD4-203ENST00000429544 SENP3-EIF4A1A0A087X0R7 540 aa21.93■■□□□ 1.1
MBD4-203ENST00000429544 KDM5AP29375 1690 aaKnown RBP21.93■■□□□ 1.1
MBD4-203ENST00000429544 CDCA8Q53HL2 280 aa21.92■■□□□ 1.1
MBD4-203ENST00000429544 ZC3H13Q5T200 1668 aaKnown RBP21.92■■□□□ 1.1
MBD4-203ENST00000429544 TSPOAP1O95153 1857 aa21.92■■□□□ 1.1
MBD4-203ENST00000429544 FAM69CQ0P6D2 419 aa21.91■■□□□ 1.1
MBD4-203ENST00000429544 SMG6Q86US8 1419 aaKnown RBP21.9■■□□□ 1.1
MBD4-203ENST00000429544 PIK3C2BO00750 1634 aa21.9■■□□□ 1.1
MBD4-203ENST00000429544 MYO3AQ8NEV4 1616 aa21.88■■□□□ 1.09
MBD4-203ENST00000429544 SETBP1Q9Y6X0 1596 aa21.88■■□□□ 1.09
MBD4-203ENST00000429544 ZMYM4Q5VZL5 1548 aa21.88■■□□□ 1.09
MBD4-203ENST00000429544 PIK3C2GO75747 1445 aa21.87■■□□□ 1.09
MBD4-203ENST00000429544 ERVK-7P63135 1459 aa21.86■■□□□ 1.09
MBD4-203ENST00000429544 NUDCQ9Y266 331 aa21.85■■□□□ 1.09
MBD4-203ENST00000429544 KNSTRNQ9Y448 316 aa21.85■■□□□ 1.09
MBD4-203ENST00000429544 ARHGAP31Q2M1Z3 1444 aa21.85■■□□□ 1.09
MBD4-203ENST00000429544 TSHZ2Q9NRE2 1034 aa21.84■■□□□ 1.09
MBD4-203ENST00000429544 RPGRIP1LQ68CZ1 1315 aa21.84■■□□□ 1.09
MBD4-203ENST00000429544 ASXL1Q8IXJ9 1541 aa21.82■■□□□ 1.08
MBD4-203ENST00000429544 NEXMIFQ5QGS0 1516 aa21.81■■□□□ 1.08
MBD4-203ENST00000429544 ADGRB1O14514 1584 aa21.81■■□□□ 1.08
MBD4-203ENST00000429544 PREX1Q8TCU6 1659 aa21.81■■□□□ 1.08
MBD4-203ENST00000429544 C14orf93Q9H972 538 aaKnown RBP21.81■■□□□ 1.08
MBD4-203ENST00000429544 QRICH2Q9H0J4 1663 aa21.8■■□□□ 1.08
MBD4-203ENST00000429544 AMER1Q5JTC6 1135 aaPredicted RBP21.8■■□□□ 1.08
MBD4-203ENST00000429544 SLC24A1O60721 1099 aa21.8■■□□□ 1.08
MBD4-203ENST00000429544 ERICH6BQ5W0A0 696 aa21.8■■□□□ 1.08
MBD4-203ENST00000429544 MYO5BQ9ULV0 1848 aa21.79■■□□□ 1.08
MBD4-203ENST00000429544 CENPJQ9HC77 1338 aaPredicted RBP21.79■■□□□ 1.08
MBD4-203ENST00000429544 NUTM2DQ5VT03 806 aaPredicted RBP21.78■■□□□ 1.08
MBD4-203ENST00000429544 TRAK1Q9UPV9 953 aa21.78■■□□□ 1.08
MBD4-203ENST00000429544 SBNO2Q9Y2G9 1366 aa21.78■■□□□ 1.08
MBD4-203ENST00000429544 TMEM132EQ6IEE7 984 aa21.77■■□□□ 1.07
MBD4-203ENST00000429544 IDI1Q13907 227 aa21.76■■□□□ 1.07
MBD4-203ENST00000429544 PPP2R1AP30153 589 aa21.75■■□□□ 1.07
MBD4-203ENST00000429544 BLMP54132 1417 aaPredicted RBP21.75■■□□□ 1.07
MBD4-203ENST00000429544 SALL2Q9Y467 1007 aaPredicted RBP21.74■■□□□ 1.07
MBD4-203ENST00000429544 PPP4R2Q9NY27 417 aa21.74■■□□□ 1.07
MBD4-203ENST00000429544 VGFO15240 615 aaPredicted RBP21.73■■□□□ 1.07
MBD4-203ENST00000429544 INSRP06213 1382 aa21.73■■□□□ 1.07
MBD4-203ENST00000429544 NPC1L1Q9UHC9 1359 aa21.73■■□□□ 1.07
MBD4-203ENST00000429544 SLC52A1Q9NWF4 448 aa21.72■■□□□ 1.07
MBD4-203ENST00000429544 REREQ9P2R6 1566 aa21.72■■□□□ 1.07
MBD4-203ENST00000429544 TMEM131LA2VDJ0 1609 aa21.72■■□□□ 1.07
MBD4-203ENST00000429544 ARHGEF28Q8N1W1 1705 aaKnown RBP21.72■■□□□ 1.07
MBD4-203ENST00000429544 KIF13AQ9H1H9 1805 aa21.69■■□□□ 1.06
MBD4-203ENST00000429544 RNF123Q5XPI4 1314 aa21.69■■□□□ 1.06
MBD4-203ENST00000429544 AGLP35573 1532 aa21.68■■□□□ 1.06
MBD4-203ENST00000429544 CARD14Q9BXL6 1004 aa21.68■■□□□ 1.06
MBD4-203ENST00000429544 CLTCQ00610 1675 aaKnown RBP21.68■■□□□ 1.06
MBD4-203ENST00000429544 FBXO31Q5XUX0 539 aaPredicted RBP21.67■■□□□ 1.06
MBD4-203ENST00000429544 ZFYVE9O95405 1425 aa21.66■■□□□ 1.06
MBD4-203ENST00000429544 SENP3Q9H4L4 574 aaPredicted RBP21.65■■□□□ 1.06
MBD4-203ENST00000429544 ADAMTS8Q9UP79 889 aa21.65■■□□□ 1.06
MBD4-203ENST00000429544 PDE3BQ13370 1112 aa21.65■■□□□ 1.06
MBD4-203ENST00000429544 WDR43Q15061 677 aaKnown RBP eCLIP21.65■■□□□ 1.06
MBD4-203ENST00000429544 B4GALNT3Q6L9W6 998 aa21.63■■□□□ 1.05
MBD4-203ENST00000429544 ARHGEF40Q8TER5 1519 aa21.62■■□□□ 1.05
MBD4-203ENST00000429544 TULP4Q9NRJ4 1543 aa21.62■■□□□ 1.05
MBD4-203ENST00000429544 NSD3Q9BZ95 1437 aa21.61■■□□□ 1.05
MBD4-203ENST00000429544 CDCA7LQ96GN5 454 aa21.61■■□□□ 1.05
MBD4-203ENST00000429544 SLC12A5Q9H2X9 1139 aa21.6■■□□□ 1.05
MBD4-203ENST00000429544 MLECQ14165 292 aa21.59■■□□□ 1.05
MBD4-203ENST00000429544 PPP6R1Q9UPN7 881 aa21.58■■□□□ 1.05
MBD4-203ENST00000429544 EVC2Q86UK5 1308 aa21.58■■□□□ 1.04
MBD4-203ENST00000429544 STK26Q9P289 416 aa21.57■■□□□ 1.04
MBD4-203ENST00000429544 RCAN3Q9UKA8 241 aa21.57■■□□□ 1.04
MBD4-203ENST00000429544 SAFB2Q14151 953 aaKnown RBP eCLIP21.56■■□□□ 1.04
MBD4-203ENST00000429544 STAG3Q9UJ98 1225 aa21.56■■□□□ 1.04
MBD4-203ENST00000429544 SPATA31D1Q6ZQQ2 1576 aa21.56■■□□□ 1.04
MBD4-203ENST00000429544 USP32Q8NFA0 1604 aa21.55■■□□□ 1.04
MBD4-203ENST00000429544 RRP1P56182 461 aaKnown RBP21.54■■□□□ 1.04
MBD4-203ENST00000429544 ALKQ9UM73 1620 aa21.53■■□□□ 1.04
MBD4-203ENST00000429544 PTPRMP28827 1452 aa21.53■■□□□ 1.04
MBD4-203ENST00000429544 PLEKHH1Q9ULM0 1364 aa21.52■■□□□ 1.04
MBD4-203ENST00000429544 PUS7Q96PZ0 661 aaKnown RBP21.52■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms