RNA–Protein interactions for RNA: ENST00000428404.5

TRIM39-207, Transcript of tripartite motif containing 39, humanhuman

TSL 2

Gene TRIM39, Length 427 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-207ENST00000428404 VGFO15240 615 aaPredicted RBP17.86■□□□□ 0.45
TRIM39-207ENST00000428404 ADGRF5Q8IZF2 1346 aa17.86■□□□□ 0.45
TRIM39-207ENST00000428404 UBR1Q8IWV7 1749 aa17.86■□□□□ 0.45
TRIM39-207ENST00000428404 IFT172Q9UG01 1749 aa17.86■□□□□ 0.45
TRIM39-207ENST00000428404 MYO5BQ9ULV0 1848 aa17.86■□□□□ 0.45
TRIM39-207ENST00000428404 MYO3AQ8NEV4 1616 aa17.85■□□□□ 0.45
TRIM39-207ENST00000428404 TMEM2Q9UHN6 1383 aa17.85■□□□□ 0.45
TRIM39-207ENST00000428404 PPLO60437 1756 aa17.84■□□□□ 0.45
TRIM39-207ENST00000428404 RIMS2Q9UQ26 1411 aa17.84■□□□□ 0.45
TRIM39-207ENST00000428404 THEMISQ8N1K5 641 aaPredicted RBP17.84■□□□□ 0.45
TRIM39-207ENST00000428404 CEP170BQ9Y4F5 1589 aaPredicted RBP17.83■□□□□ 0.44
TRIM39-207ENST00000428404 ARHGAP23Q9P227 1491 aa17.82■□□□□ 0.44
TRIM39-207ENST00000428404 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.82■□□□□ 0.44
TRIM39-207ENST00000428404 HDGFP51858 240 aaKnown RBP17.81■□□□□ 0.44
TRIM39-207ENST00000428404 SLIT1O75093 1534 aa17.81■□□□□ 0.44
TRIM39-207ENST00000428404 RALGAPBQ86X10 1494 aa17.81■□□□□ 0.44
TRIM39-207ENST00000428404 PIK3C2GO75747 1445 aa17.81■□□□□ 0.44
TRIM39-207ENST00000428404 NUTM2DQ5VT03 806 aaPredicted RBP17.8■□□□□ 0.44
TRIM39-207ENST00000428404 ZNF142P52746 1687 aaPredicted RBP17.8■□□□□ 0.44
TRIM39-207ENST00000428404 GPRASP1Q5JY77 1395 aa17.79■□□□□ 0.44
TRIM39-207ENST00000428404 LTKP29376 864 aa17.78■□□□□ 0.44
TRIM39-207ENST00000428404 NBPF1Q3BBV0 1214 aa17.78■□□□□ 0.44
TRIM39-207ENST00000428404 C14orf93Q9H972 538 aaKnown RBP17.78■□□□□ 0.44
TRIM39-207ENST00000428404 TRPM1Q7Z4N2 1603 aa17.76■□□□□ 0.43
TRIM39-207ENST00000428404 CFAP70Q5T0N1 1121 aa17.76■□□□□ 0.43
TRIM39-207ENST00000428404 TXNDC2Q86VQ3 553 aa17.75■□□□□ 0.43
TRIM39-207ENST00000428404 EID1Q9Y6B2 187 aa17.75■□□□□ 0.43
TRIM39-207ENST00000428404 KIAA1210Q9ULL0 1709 aa17.74■□□□□ 0.43
TRIM39-207ENST00000428404 ROCK2O75116 1388 aaKnown RBP17.74■□□□□ 0.43
TRIM39-207ENST00000428404 PLEKHG1Q9ULL1 1385 aa17.73■□□□□ 0.43
TRIM39-207ENST00000428404 CARD11Q9BXL7 1154 aa17.72■□□□□ 0.43
TRIM39-207ENST00000428404 SCAF11Q99590 1463 aaKnown RBP17.71■□□□□ 0.43
TRIM39-207ENST00000428404 ANKLE2Q86XL3 938 aa17.71■□□□□ 0.43
TRIM39-207ENST00000428404 SETBP1Q9Y6X0 1596 aa17.7■□□□□ 0.42
TRIM39-207ENST00000428404 LAMC1P11047 1609 aa17.69■□□□□ 0.42
TRIM39-207ENST00000428404 EIF4G2P78344 907 aaKnown RBP eCLIP17.69■□□□□ 0.42
TRIM39-207ENST00000428404 ADGRB1O14514 1584 aa17.69■□□□□ 0.42
TRIM39-207ENST00000428404 ALKQ9UM73 1620 aa17.69■□□□□ 0.42
TRIM39-207ENST00000428404 NRXN3Q9Y4C0 1643 aa17.68■□□□□ 0.42
TRIM39-207ENST00000428404 MED14O60244 1454 aa17.68■□□□□ 0.42
TRIM39-207ENST00000428404 ADAMTS13Q76LX8 1427 aa17.67■□□□□ 0.42
TRIM39-207ENST00000428404 HSPA5P11021 654 aaKnown RBP17.67■□□□□ 0.42
TRIM39-207ENST00000428404 LMTK3Q96Q04 1460 aa17.67■□□□□ 0.42
TRIM39-207ENST00000428404 USP47Q96K76 1375 aa17.66■□□□□ 0.42
TRIM39-207ENST00000428404 TMEM132EQ6IEE7 984 aa17.66■□□□□ 0.42
TRIM39-207ENST00000428404 SENP3Q9H4L4 574 aaPredicted RBP17.65■□□□□ 0.42
TRIM39-207ENST00000428404 TBX22Q9Y458 520 aa17.65■□□□□ 0.42
TRIM39-207ENST00000428404 ASXL1Q8IXJ9 1541 aa17.64■□□□□ 0.41
TRIM39-207ENST00000428404 ZNF316A6NFI3 1004 aaPredicted RBP17.64■□□□□ 0.41
TRIM39-207ENST00000428404 SETD1AO15047 1707 aaKnown RBP17.63■□□□□ 0.41
TRIM39-207ENST00000428404 METP08581 1390 aa17.63■□□□□ 0.41
TRIM39-207ENST00000428404 HSPA2P54652 639 aa17.62■□□□□ 0.41
TRIM39-207ENST00000428404 NCKAP5LQ9HCH0 1330 aa17.62■□□□□ 0.41
TRIM39-207ENST00000428404 IQGAP1P46940 1657 aa17.61■□□□□ 0.41
TRIM39-207ENST00000428404 BCANQ96GW7 911 aa17.61■□□□□ 0.41
TRIM39-207ENST00000428404 HIRIP3Q9BW71 556 aaPredicted RBP17.61■□□□□ 0.41
TRIM39-207ENST00000428404 ST20-MTHFSA0A0A6YYL1 179 aa17.6■□□□□ 0.41
TRIM39-207ENST00000428404 SLC26A8Q96RN1 970 aa17.6■□□□□ 0.41
TRIM39-207ENST00000428404 LRPPRCP42704 1394 aaKnown RBP17.6■□□□□ 0.41
TRIM39-207ENST00000428404 NPHP4O75161 1426 aaPredicted RBP17.6■□□□□ 0.41
TRIM39-207ENST00000428404 YTHDC2Q9H6S0 1430 aaKnown RBP17.6■□□□□ 0.41
TRIM39-207ENST00000428404 DIP2AQ14689 1571 aa17.59■□□□□ 0.41
TRIM39-207ENST00000428404 ABCC11Q96J66 1382 aa17.59■□□□□ 0.41
TRIM39-207ENST00000428404 TESK2Q96S53 571 aa17.58■□□□□ 0.4
TRIM39-207ENST00000428404 TRAK1Q9UPV9 953 aa17.58■□□□□ 0.4
TRIM39-207ENST00000428404 SIRT1Q96EB6 747 aa17.57■□□□□ 0.4
TRIM39-207ENST00000428404 EIF3AQ14152 1382 aaKnown RBP17.56■□□□□ 0.4
TRIM39-207ENST00000428404 PIK3R4Q99570 1358 aa17.56■□□□□ 0.4
TRIM39-207ENST00000428404 TECPR2O15040 1411 aa17.55■□□□□ 0.4
TRIM39-207ENST00000428404 POLR1AO95602 1720 aaPredicted RBP17.55■□□□□ 0.4
TRIM39-207ENST00000428404 STK26Q9P289 416 aa17.55■□□□□ 0.4
TRIM39-207ENST00000428404 PTPRUQ92729 1446 aa17.55■□□□□ 0.4
TRIM39-207ENST00000428404 DLC1Q96QB1 1528 aa17.54■□□□□ 0.4
TRIM39-207ENST00000428404 C11orf95C9JLR9 678 aaPredicted RBP17.53■□□□□ 0.4
TRIM39-207ENST00000428404 SBNO2Q9Y2G9 1366 aa17.53■□□□□ 0.4
TRIM39-207ENST00000428404 CENPJQ9HC77 1338 aaPredicted RBP17.52■□□□□ 0.4
TRIM39-207ENST00000428404 FAM135BQ49AJ0 1406 aa17.51■□□□□ 0.39
TRIM39-207ENST00000428404 AMOTL2Q9Y2J4 779 aa17.51■□□□□ 0.39
TRIM39-207ENST00000428404 STRCQ7RTU9 1775 aa17.51■□□□□ 0.39
TRIM39-207ENST00000428404 SLC24A1O60721 1099 aa17.5■□□□□ 0.39
TRIM39-207ENST00000428404 PRAM1Q96QH2 718 aa17.5■□□□□ 0.39
TRIM39-207ENST00000428404 ARHGEF28Q8N1W1 1705 aaKnown RBP17.5■□□□□ 0.39
TRIM39-207ENST00000428404 ROBO2Q9HCK4 1378 aa17.49■□□□□ 0.39
TRIM39-207ENST00000428404 WASHC2AQ641Q2 1341 aa17.48■□□□□ 0.39
TRIM39-207ENST00000428404 KNDC1Q76NI1 1749 aa17.48■□□□□ 0.39
TRIM39-207ENST00000428404 CPS1P31327 1500 aa17.47■□□□□ 0.39
TRIM39-207ENST00000428404 KCNA6P17658 529 aa17.47■□□□□ 0.39
TRIM39-207ENST00000428404 WAPLQ7Z5K2 1190 aa17.47■□□□□ 0.39
TRIM39-207ENST00000428404 POGKQ9P215 609 aa17.47■□□□□ 0.39
TRIM39-207ENST00000428404 XRN1Q8IZH2 1706 aaKnown RBP17.47■□□□□ 0.39
TRIM39-207ENST00000428404 PTCH1Q13635 1447 aa17.47■□□□□ 0.39
TRIM39-207ENST00000428404 KIF7Q2M1P5 1343 aa17.47■□□□□ 0.39
TRIM39-207ENST00000428404 CCDC7Q96M83 1385 aa17.46■□□□□ 0.39
TRIM39-207ENST00000428404 PLEKHH1Q9ULM0 1364 aa17.46■□□□□ 0.39
TRIM39-207ENST00000428404 TMF1P82094 1093 aa17.46■□□□□ 0.39
TRIM39-207ENST00000428404 DISP3Q9P2K9 1392 aa17.45■□□□□ 0.38
TRIM39-207ENST00000428404 CHD2O14647 1828 aaKnown RBP17.44■□□□□ 0.38
TRIM39-207ENST00000428404 DMRT2Q9Y5R5 561 aa17.44■□□□□ 0.38
TRIM39-207ENST00000428404 QRICH2Q9H0J4 1663 aa17.42■□□□□ 0.38
TRIM39-207ENST00000428404 SAFB2Q14151 953 aaKnown RBP eCLIP17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms