RNA–Protein interactions for RNA: ENST00000428313.5

C9orf3-206, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best)

Gene C9orf3, Length 2,288 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-206ENST00000428313 NCOA3Q9Y6Q9 1424 aa20.35■□□□□ 0.85
C9orf3-206ENST00000428313 CEP170Q5SW79 1584 aa20.35■□□□□ 0.85
C9orf3-206ENST00000428313 COL17A1Q9UMD9 1497 aaPredicted RBP20.35■□□□□ 0.85
C9orf3-206ENST00000428313 CDK13Q14004 1512 aaKnown RBP20.35■□□□□ 0.85
C9orf3-206ENST00000428313 ADAMTS8Q9UP79 889 aa20.34■□□□□ 0.85
C9orf3-206ENST00000428313 KIAA0586Q9BVV6 1533 aa20.34■□□□□ 0.85
C9orf3-206ENST00000428313 ANKRD30AQ9BXX3 1397 aa20.34■□□□□ 0.85
C9orf3-206ENST00000428313 GAS2L3Q86XJ1 694 aa20.34■□□□□ 0.85
C9orf3-206ENST00000428313 ZNF692Q9BU19 519 aaPredicted RBP20.34■□□□□ 0.85
C9orf3-206ENST00000428313 RTEL1-TNFRSF6BF6WH68 1400 aa20.33■□□□□ 0.85
C9orf3-206ENST00000428313 MSNP26038 577 aaKnown RBP20.33■□□□□ 0.85
C9orf3-206ENST00000428313 CLUAP1Q96AJ1 413 aa20.33■□□□□ 0.85
C9orf3-206ENST00000428313 HS1BP3Q53T59 392 aa20.33■□□□□ 0.84
C9orf3-206ENST00000428313 PDE4CQ08493 712 aa20.32■□□□□ 0.84
C9orf3-206ENST00000428313 FAM13BQ9NYF5 915 aa20.32■□□□□ 0.84
C9orf3-206ENST00000428313 PLXNC1O60486 1568 aa20.31■□□□□ 0.84
C9orf3-206ENST00000428313 NCLP19338 710 aaKnown RBP20.3■□□□□ 0.84
C9orf3-206ENST00000428313 DDIT3P35638 169 aa20.3■□□□□ 0.84
C9orf3-206ENST00000428313 PKD2Q13563 968 aa20.3■□□□□ 0.84
C9orf3-206ENST00000428313 LAMC1P11047 1609 aa20.3■□□□□ 0.84
C9orf3-206ENST00000428313 TRPM1Q7Z4N2 1603 aa20.3■□□□□ 0.84
C9orf3-206ENST00000428313 DYNC1I1O14576 645 aa20.29■□□□□ 0.84
C9orf3-206ENST00000428313 CC2D1BQ5T0F9 858 aaKnown RBP20.29■□□□□ 0.84
C9orf3-206ENST00000428313 SPRYD3Q8NCJ5 442 aa20.29■□□□□ 0.84
C9orf3-206ENST00000428313 ANP32BQ92688 251 aaKnown RBP20.29■□□□□ 0.84
C9orf3-206ENST00000428313 IBTKQ9P2D0 1353 aaPredicted RBP20.29■□□□□ 0.84
C9orf3-206ENST00000428313 PMFBP1Q8TBY8 1022 aa20.29■□□□□ 0.84
C9orf3-206ENST00000428313 CIZ1Q9ULV3 898 aaPredicted RBP20.29■□□□□ 0.84
C9orf3-206ENST00000428313 ADGRL2O95490 1459 aa20.28■□□□□ 0.84
C9orf3-206ENST00000428313 DMTNQ08495 405 aa20.28■□□□□ 0.84
C9orf3-206ENST00000428313 GBP4Q96PP9 640 aa20.28■□□□□ 0.84
C9orf3-206ENST00000428313 ITSN2Q9NZM3 1697 aa20.28■□□□□ 0.84
C9orf3-206ENST00000428313 ZNF500O60304 480 aaPredicted RBP20.27■□□□□ 0.84
C9orf3-206ENST00000428313 NASPP49321 788 aaPredicted RBP20.27■□□□□ 0.83
C9orf3-206ENST00000428313 WDR43Q15061 677 aaKnown RBP eCLIP20.27■□□□□ 0.83
C9orf3-206ENST00000428313 HSCBQ8IWL3 235 aa20.26■□□□□ 0.83
C9orf3-206ENST00000428313 CAMSAP2Q08AD1 1489 aa20.26■□□□□ 0.83
C9orf3-206ENST00000428313 C22orf23Q9BZE7 217 aa20.25■□□□□ 0.83
C9orf3-206ENST00000428313 R3HCC1Q9Y3T6 440 aaKnown RBP20.25■□□□□ 0.83
C9orf3-206ENST00000428313 ABCC2Q92887 1545 aa20.25■□□□□ 0.83
C9orf3-206ENST00000428313 UQCRHLA0A096LP55 91 aa20.24■□□□□ 0.83
C9orf3-206ENST00000428313 BCAR3O75815 825 aa20.24■□□□□ 0.83
C9orf3-206ENST00000428313 UQCRHP07919 91 aa20.24■□□□□ 0.83
C9orf3-206ENST00000428313 KIAA0556O60303 1618 aa20.24■□□□□ 0.83
C9orf3-206ENST00000428313 CROCC2H7BZ55 1655 aa20.24■□□□□ 0.83
C9orf3-206ENST00000428313 RAPGEF6Q8TEU7 1601 aa20.24■□□□□ 0.83
C9orf3-206ENST00000428313 KDM5DQ9BY66 1539 aa20.22■□□□□ 0.83
C9orf3-206ENST00000428313 CSPP1Q1MSJ5 1256 aa20.22■□□□□ 0.83
C9orf3-206ENST00000428313 TNPO1Q92973 898 aaKnown RBP20.22■□□□□ 0.83
C9orf3-206ENST00000428313 NOL7Q9UMY1 257 aaKnown RBP20.22■□□□□ 0.83
C9orf3-206ENST00000428313 GPRASP1Q5JY77 1395 aa20.22■□□□□ 0.83
C9orf3-206ENST00000428313 E9PSI1 815 aa20.22■□□□□ 0.83
C9orf3-206ENST00000428313 ADCY10Q96PN6 1610 aa20.21■□□□□ 0.83
C9orf3-206ENST00000428313 CCDC94Q9BW85 323 aaPredicted RBP20.21■□□□□ 0.83
C9orf3-206ENST00000428313 PANK3Q9H999 370 aa20.21■□□□□ 0.83
C9orf3-206ENST00000428313 NUP153P49790 1475 aaKnown RBP20.21■□□□□ 0.83
C9orf3-206ENST00000428313 RAB3GAP1Q15042 981 aa20.2■□□□□ 0.82
C9orf3-206ENST00000428313 SMC5Q8IY18 1101 aa20.2■□□□□ 0.82
C9orf3-206ENST00000428313 EIF4G3O43432 1585 aaKnown RBP20.2■□□□□ 0.82
C9orf3-206ENST00000428313 SNX21Q969T3 373 aa20.2■□□□□ 0.82
C9orf3-206ENST00000428313 ZHX1Q9UKY1 873 aaPredicted RBP20.2■□□□□ 0.82
C9orf3-206ENST00000428313 PRDM15P57071 1507 aaPredicted RBP20.2■□□□□ 0.82
C9orf3-206ENST00000428313 PDZRN3Q9UPQ7 1066 aa20.19■□□□□ 0.82
C9orf3-206ENST00000428313 PRAG1Q86YV5 1406 aa20.19■□□□□ 0.82
C9orf3-206ENST00000428313 NGEFQ8N5V2 710 aa20.19■□□□□ 0.82
C9orf3-206ENST00000428313 MCM5P33992 734 aa20.18■□□□□ 0.82
C9orf3-206ENST00000428313 DISP1Q96F81 1524 aa20.18■□□□□ 0.82
C9orf3-206ENST00000428313 DISP3Q9P2K9 1392 aa20.17■□□□□ 0.82
C9orf3-206ENST00000428313 PIK3C2GO75747 1445 aa20.17■□□□□ 0.82
C9orf3-206ENST00000428313 TROQ12816 1431 aaPredicted RBP20.17■□□□□ 0.82
C9orf3-206ENST00000428313 PPP2R1AP30153 589 aa20.17■□□□□ 0.82
C9orf3-206ENST00000428313 ARHGAP31Q2M1Z3 1444 aa20.16■□□□□ 0.82
C9orf3-206ENST00000428313 ZSCAN20P17040 1043 aaPredicted RBP20.16■□□□□ 0.82
C9orf3-206ENST00000428313 TNNT2P45379 298 aaPredicted RBP20.16■□□□□ 0.82
C9orf3-206ENST00000428313 SASS6Q6UVJ0 657 aa20.16■□□□□ 0.82
C9orf3-206ENST00000428313 GTPBP4Q9BZE4 634 aaKnown RBP20.16■□□□□ 0.82
C9orf3-206ENST00000428313 KDM2AQ9Y2K7 1162 aa20.16■□□□□ 0.82
C9orf3-206ENST00000428313 COG6Q9Y2V7 657 aa20.16■□□□□ 0.82
C9orf3-206ENST00000428313 ERBINQ96RT1 1412 aa20.16■□□□□ 0.82
C9orf3-206ENST00000428313 SHROOM2Q13796 1616 aa20.16■□□□□ 0.82
C9orf3-206ENST00000428313 KIF20AO95235 890 aa20.15■□□□□ 0.82
C9orf3-206ENST00000428313 SPINK5Q9NQ38 1064 aaPredicted RBP20.15■□□□□ 0.82
C9orf3-206ENST00000428313 ZNF644Q9H582 1327 aaPredicted RBP20.14■□□□□ 0.82
C9orf3-206ENST00000428313 PDLIM2Q96JY6 352 aa20.14■□□□□ 0.81
C9orf3-206ENST00000428313 TESK2Q96S53 571 aa20.14■□□□□ 0.81
C9orf3-206ENST00000428313 RWDD1Q9H446 243 aaPredicted RBP20.14■□□□□ 0.81
C9orf3-206ENST00000428313 CANXP27824 592 aaKnown RBP20.13■□□□□ 0.81
C9orf3-206ENST00000428313 KLHL40Q2TBA0 621 aa20.13■□□□□ 0.81
C9orf3-206ENST00000428313 CLEC17AQ6ZS10 378 aa20.13■□□□□ 0.81
C9orf3-206ENST00000428313 PANK1Q8TE04 598 aa20.13■□□□□ 0.81
C9orf3-206ENST00000428313 FAM135AQ9P2D6 1515 aa20.13■□□□□ 0.81
C9orf3-206ENST00000428313 BBXQ8WY36 941 aaPredicted RBP20.13■□□□□ 0.81
C9orf3-206ENST00000428313 MFAP1P55081 439 aaKnown RBP20.12■□□□□ 0.81
C9orf3-206ENST00000428313 ZNF445P59923 1031 aa20.12■□□□□ 0.81
C9orf3-206ENST00000428313 PRDM10Q9NQV6 1147 aa20.12■□□□□ 0.81
C9orf3-206ENST00000428313 EIF2AK3Q9NZJ5 1116 aaKnown RBP20.12■□□□□ 0.81
C9orf3-206ENST00000428313 ABCC10Q5T3U5 1492 aa20.12■□□□□ 0.81
C9orf3-206ENST00000428313 SHANK2Q9UPX8 1470 aa20.12■□□□□ 0.81
C9orf3-206ENST00000428313 ANKRD50Q9ULJ7 1429 aa20.12■□□□□ 0.81
C9orf3-206ENST00000428313 GOLGA6L22H0YM25 854 aa20.11■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms