RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 CDC42BPAQ5VT25 1732 aa12.81□□□□□ -0.36
USP54-205ENST00000424265 PPP4R2Q9NY27 417 aa12.81□□□□□ -0.36
USP54-205ENST00000424265 GCC2Q8IWJ2 1684 aa12.8□□□□□ -0.36
USP54-205ENST00000424265 BBXQ8WY36 941 aaPredicted RBP12.8□□□□□ -0.36
USP54-205ENST00000424265 DDX10Q13206 875 aaKnown RBP12.79□□□□□ -0.36
USP54-205ENST00000424265 HECW2Q9P2P5 1572 aa12.79□□□□□ -0.36
USP54-205ENST00000424265 NAP1L2Q9ULW6 460 aaPredicted RBP12.79□□□□□ -0.36
USP54-205ENST00000424265 FAM135AQ9P2D6 1515 aa12.78□□□□□ -0.36
USP54-205ENST00000424265 PLXNC1O60486 1568 aa12.77□□□□□ -0.36
USP54-205ENST00000424265 HSPA5P11021 654 aaKnown RBP12.77□□□□□ -0.36
USP54-205ENST00000424265 CDK11BP21127 795 aaKnown RBP12.77□□□□□ -0.36
USP54-205ENST00000424265 KNSTRNQ9Y448 316 aa12.77□□□□□ -0.37
USP54-205ENST00000424265 HAP1P54257 671 aaPredicted RBP12.76□□□□□ -0.37
USP54-205ENST00000424265 TMC1Q8TDI8 760 aa12.75□□□□□ -0.37
USP54-205ENST00000424265 RPRD2Q5VT52 1461 aaKnown RBP12.74□□□□□ -0.37
USP54-205ENST00000424265 TNRQ92752 1358 aa12.72□□□□□ -0.37
USP54-205ENST00000424265 HDGFL2Q7Z4V5 671 aaPredicted RBP12.72□□□□□ -0.37
USP54-205ENST00000424265 SRPK2P78362 688 aaKnown RBP12.72□□□□□ -0.37
USP54-205ENST00000424265 BRD2P25440 801 aaKnown RBP12.71□□□□□ -0.37
USP54-205ENST00000424265 KDM5DQ9BY66 1539 aa12.71□□□□□ -0.37
USP54-205ENST00000424265 USP47Q96K76 1375 aa12.71□□□□□ -0.37
USP54-205ENST00000424265 LRRIQ1Q96JM4 1722 aa12.71□□□□□ -0.37
USP54-205ENST00000424265 STK26Q9P289 416 aa12.7□□□□□ -0.38
USP54-205ENST00000424265 CDC42BPBQ9Y5S2 1711 aa12.7□□□□□ -0.38
USP54-205ENST00000424265 ANKLE2Q86XL3 938 aa12.7□□□□□ -0.38
USP54-205ENST00000424265 CFAP53Q96M91 514 aa12.7□□□□□ -0.38
USP54-205ENST00000424265 EVC2Q86UK5 1308 aa12.7□□□□□ -0.38
USP54-205ENST00000424265 DIP2BQ9P265 1576 aa12.7□□□□□ -0.38
USP54-205ENST00000424265 HOMEZQ8IX15 550 aa12.69□□□□□ -0.38
USP54-205ENST00000424265 CHMP4BQ9H444 224 aaKnown RBP12.69□□□□□ -0.38
USP54-205ENST00000424265 TXNDC2Q86VQ3 553 aa12.69□□□□□ -0.38
USP54-205ENST00000424265 TERF2IPQ9NYB0 399 aa12.69□□□□□ -0.38
USP54-205ENST00000424265 DDRGK1Q96HY6 314 aa12.68□□□□□ -0.38
USP54-205ENST00000424265 CROCC2H7BZ55 1655 aa12.68□□□□□ -0.38
USP54-205ENST00000424265 KDM6BO15054 1643 aa12.68□□□□□ -0.38
USP54-205ENST00000424265 AMER1Q5JTC6 1135 aaPredicted RBP12.67□□□□□ -0.38
USP54-205ENST00000424265 TSPOAP1O95153 1857 aa12.67□□□□□ -0.38
USP54-205ENST00000424265 PZPP20742 1482 aa12.67□□□□□ -0.38
USP54-205ENST00000424265 CENPJQ9HC77 1338 aaPredicted RBP12.67□□□□□ -0.38
USP54-205ENST00000424265 EIF2AK4Q9P2K8 1649 aaKnown RBP12.67□□□□□ -0.38
USP54-205ENST00000424265 ARHGEF12Q9NZN5 1544 aa12.67□□□□□ -0.38
USP54-205ENST00000424265 B4GALNT3Q6L9W6 998 aa12.66□□□□□ -0.38
USP54-205ENST00000424265 HIRIP3Q9BW71 556 aaPredicted RBP12.66□□□□□ -0.38
USP54-205ENST00000424265 WASHC2AQ641Q2 1341 aa12.66□□□□□ -0.38
USP54-205ENST00000424265 DHX37Q8IY37 1157 aaKnown RBP12.66□□□□□ -0.38
USP54-205ENST00000424265 WDR43Q15061 677 aaKnown RBP eCLIP12.66□□□□□ -0.38
USP54-205ENST00000424265 RGS3P49796 1198 aa12.65□□□□□ -0.38
USP54-205ENST00000424265 L1TD1Q5T7N2 865 aaKnown RBP12.65□□□□□ -0.38
USP54-205ENST00000424265 TRAK1Q9UPV9 953 aa12.65□□□□□ -0.38
USP54-205ENST00000424265 YEATS2Q9ULM3 1422 aa12.65□□□□□ -0.38
USP54-205ENST00000424265 SENP3Q9H4L4 574 aaPredicted RBP12.65□□□□□ -0.38
USP54-205ENST00000424265 ZMYM3Q14202 1370 aa12.64□□□□□ -0.39
USP54-205ENST00000424265 HNRNPUQ00839 825 aaKnown RBP eCLIP12.64□□□□□ -0.39
USP54-205ENST00000424265 NUTM2DQ5VT03 806 aaPredicted RBP12.64□□□□□ -0.39
USP54-205ENST00000424265 CALD1Q05682 793 aaKnown RBP12.64□□□□□ -0.39
USP54-205ENST00000424265 FRAT1Q92837 279 aaPredicted RBP12.64□□□□□ -0.39
USP54-205ENST00000424265 IDI1Q13907 227 aa12.63□□□□□ -0.39
USP54-205ENST00000424265 ST20-MTHFSA0A0A6YYL1 179 aa12.63□□□□□ -0.39
USP54-205ENST00000424265 KTN1Q86UP2 1357 aaKnown RBP12.62□□□□□ -0.39
USP54-205ENST00000424265 RALBP1Q15311 655 aa12.62□□□□□ -0.39
USP54-205ENST00000424265 MRS2Q9HD23 443 aa12.62□□□□□ -0.39
USP54-205ENST00000424265 TULP1O00294 542 aaPredicted RBP12.62□□□□□ -0.39
USP54-205ENST00000424265 NUDCQ9Y266 331 aa12.61□□□□□ -0.39
USP54-205ENST00000424265 INO80Q9ULG1 1556 aaPredicted RBP12.61□□□□□ -0.39
USP54-205ENST00000424265 IPO4Q8TEX9 1081 aaKnown RBP12.61□□□□□ -0.39
USP54-205ENST00000424265 MAP3K4Q9Y6R4 1608 aa12.61□□□□□ -0.39
USP54-205ENST00000424265 KDM5CP41229 1560 aa12.61□□□□□ -0.39
USP54-205ENST00000424265 SAFB2Q14151 953 aaKnown RBP eCLIP12.6□□□□□ -0.39
USP54-205ENST00000424265 CHMP4AQ9BY43 222 aa12.6□□□□□ -0.39
USP54-205ENST00000424265 DMRT2Q9Y5R5 561 aa12.6□□□□□ -0.39
USP54-205ENST00000424265 ARHGAP31Q2M1Z3 1444 aa12.6□□□□□ -0.39
USP54-205ENST00000424265 ANP32BQ92688 251 aaKnown RBP12.6□□□□□ -0.39
USP54-205ENST00000424265 UNC13BO14795 1591 aa12.6□□□□□ -0.39
USP54-205ENST00000424265 AGLP35573 1532 aa12.59□□□□□ -0.39
USP54-205ENST00000424265 FBXO31Q5XUX0 539 aaPredicted RBP12.59□□□□□ -0.39
USP54-205ENST00000424265 CCER2I3L3R5 266 aa12.59□□□□□ -0.39
USP54-205ENST00000424265 TRIM44Q96DX7 344 aaPredicted RBP12.59□□□□□ -0.39
USP54-205ENST00000424265 ZMYM4Q5VZL5 1548 aa12.59□□□□□ -0.39
USP54-205ENST00000424265 CFAP70Q5T0N1 1121 aa12.59□□□□□ -0.39
USP54-205ENST00000424265 TET3O43151 1660 aa12.58□□□□□ -0.4
USP54-205ENST00000424265 IQGAP3Q86VI3 1631 aa12.58□□□□□ -0.4
USP54-205ENST00000424265 PDCL3Q9H2J4 239 aa12.58□□□□□ -0.4
USP54-205ENST00000424265 MORC1Q86VD1 984 aa12.56□□□□□ -0.4
USP54-205ENST00000424265 NOS1P29475 1434 aa12.56□□□□□ -0.4
USP54-205ENST00000424265 RIMS2Q9UQ26 1411 aa12.56□□□□□ -0.4
USP54-205ENST00000424265 ARHGEF40Q8TER5 1519 aa12.56□□□□□ -0.4
USP54-205ENST00000424265 TRPM2O94759 1503 aa12.55□□□□□ -0.4
USP54-205ENST00000424265 LMTK2Q8IWU2 1503 aa12.55□□□□□ -0.4
USP54-205ENST00000424265 TPM2P07951 284 aa12.55□□□□□ -0.4
USP54-205ENST00000424265 C14orf93Q9H972 538 aaKnown RBP12.55□□□□□ -0.4
USP54-205ENST00000424265 NPATQ14207 1427 aa12.55□□□□□ -0.4
USP54-205ENST00000424265 UHRF1BP1Q6BDS2 1440 aa12.55□□□□□ -0.4
USP54-205ENST00000424265 RALGAPBQ86X10 1494 aa12.55□□□□□ -0.4
USP54-205ENST00000424265 SCAF11Q99590 1463 aaKnown RBP12.55□□□□□ -0.4
USP54-205ENST00000424265 ABCC3O15438 1527 aa12.55□□□□□ -0.4
USP54-205ENST00000424265 PRDM15P57071 1507 aaPredicted RBP12.55□□□□□ -0.4
USP54-205ENST00000424265 CGNL1Q0VF96 1302 aa12.55□□□□□ -0.4
USP54-205ENST00000424265 NGDNQ8NEJ9 315 aaKnown RBP12.55□□□□□ -0.4
USP54-205ENST00000424265 DIP2CQ9Y2E4 1556 aa12.54□□□□□ -0.4
USP54-205ENST00000424265 NBPF8Q3BBV2 869 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms