RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 POTEAQ6S8J7 498 aa12.57□□□□□ -0.4
VIM-202ENST00000421459 PPARGC1BQ86YN6 1023 aaKnown RBP12.57□□□□□ -0.4
VIM-202ENST00000421459 ADGRB3O60242 1522 aa12.57□□□□□ -0.4
VIM-202ENST00000421459 RIMS2Q9UQ26 1411 aa12.55□□□□□ -0.4
VIM-202ENST00000421459 PPP1R15AO75807 674 aaPredicted RBP12.55□□□□□ -0.4
VIM-202ENST00000421459 SLAIN2Q9P270 581 aa12.55□□□□□ -0.4
VIM-202ENST00000421459 ZFYVE9O95405 1425 aa12.54□□□□□ -0.4
VIM-202ENST00000421459 ITGAEP38570 1179 aa12.54□□□□□ -0.4
VIM-202ENST00000421459 KDM5AP29375 1690 aaKnown RBP12.53□□□□□ -0.4
VIM-202ENST00000421459 ROBO1Q9Y6N7 1651 aa12.53□□□□□ -0.4
VIM-202ENST00000421459 PLEKHG1Q9ULL1 1385 aa12.53□□□□□ -0.4
VIM-202ENST00000421459 MSH6P52701 1360 aa12.52□□□□□ -0.41
VIM-202ENST00000421459 RPRD2Q5VT52 1461 aaKnown RBP12.51□□□□□ -0.41
VIM-202ENST00000421459 NWD1Q149M9 1564 aa12.51□□□□□ -0.41
VIM-202ENST00000421459 TBX22Q9Y458 520 aa12.5□□□□□ -0.41
VIM-202ENST00000421459 NKTRP30414 1462 aaKnown RBP12.5□□□□□ -0.41
VIM-202ENST00000421459 TMEM131LA2VDJ0 1609 aa12.49□□□□□ -0.41
VIM-202ENST00000421459 ADAMTS13Q76LX8 1427 aa12.49□□□□□ -0.41
VIM-202ENST00000421459 HDGFP51858 240 aaKnown RBP12.49□□□□□ -0.41
VIM-202ENST00000421459 C14orf37Q86TY3 774 aa12.49□□□□□ -0.41
VIM-202ENST00000421459 MYO5BQ9ULV0 1848 aa12.48□□□□□ -0.41
VIM-202ENST00000421459 GCC2Q8IWJ2 1684 aa12.48□□□□□ -0.41
VIM-202ENST00000421459 NUP155O75694 1391 aa12.47□□□□□ -0.41
VIM-202ENST00000421459 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.47□□□□□ -0.41
VIM-202ENST00000421459 PTPRUQ92729 1446 aa12.46□□□□□ -0.41
VIM-202ENST00000421459 E9PCH4 1651 aa12.46□□□□□ -0.41
VIM-202ENST00000421459 AMOTL2Q9Y2J4 779 aa12.46□□□□□ -0.41
VIM-202ENST00000421459 UNC13BO14795 1591 aa12.46□□□□□ -0.42
VIM-202ENST00000421459 JCADQ9P266 1359 aa12.45□□□□□ -0.42
VIM-202ENST00000421459 CHD2O14647 1828 aaKnown RBP12.45□□□□□ -0.42
VIM-202ENST00000421459 ROCK1Q13464 1354 aa12.44□□□□□ -0.42
VIM-202ENST00000421459 C19orf44Q9H6X5 657 aa12.44□□□□□ -0.42
VIM-202ENST00000421459 PHLPP1O60346 1717 aa12.44□□□□□ -0.42
VIM-202ENST00000421459 ATF3P18847 181 aa12.43□□□□□ -0.42
VIM-202ENST00000421459 LRP6O75581 1613 aa12.43□□□□□ -0.42
VIM-202ENST00000421459 BRINP3Q76B58 766 aa12.42□□□□□ -0.42
VIM-202ENST00000421459 CADPS2Q86UW7 1296 aa12.42□□□□□ -0.42
VIM-202ENST00000421459 COL16A1Q07092 1604 aaPredicted RBP12.41□□□□□ -0.42
VIM-202ENST00000421459 NUTM2BA6NNL0 878 aaPredicted RBP12.41□□□□□ -0.42
VIM-202ENST00000421459 NUTM2EB1AL46 878 aaPredicted RBP12.41□□□□□ -0.42
VIM-202ENST00000421459 ZNF326Q5BKZ1 582 aaKnown RBP12.41□□□□□ -0.42
VIM-202ENST00000421459 MEX3CQ5U5Q3 659 aaKnown RBP12.41□□□□□ -0.42
VIM-202ENST00000421459 NUTM2AQ8IVF1 878 aaPredicted RBP12.41□□□□□ -0.42
VIM-202ENST00000421459 DDX17Q92841 729 aaKnown RBP12.41□□□□□ -0.42
VIM-202ENST00000421459 IQGAP3Q86VI3 1631 aa12.4□□□□□ -0.42
VIM-202ENST00000421459 NCOA3Q9Y6Q9 1424 aa12.4□□□□□ -0.42
VIM-202ENST00000421459 TRIM52Q96A61 297 aa12.4□□□□□ -0.42
VIM-202ENST00000421459 METP08581 1390 aa12.4□□□□□ -0.42
VIM-202ENST00000421459 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.4□□□□□ -0.43
VIM-202ENST00000421459 PIK3R4Q99570 1358 aa12.39□□□□□ -0.43
VIM-202ENST00000421459 SETD1AO15047 1707 aaKnown RBP12.39□□□□□ -0.43
VIM-202ENST00000421459 SPATA31A6Q5VVP1 1343 aa12.37□□□□□ -0.43
VIM-202ENST00000421459 TRPM2O94759 1503 aa12.37□□□□□ -0.43
VIM-202ENST00000421459 DIP2AQ14689 1571 aa12.36□□□□□ -0.43
VIM-202ENST00000421459 NRXN3Q9Y4C0 1643 aa12.36□□□□□ -0.43
VIM-202ENST00000421459 AHDC1Q5TGY3 1603 aaPredicted RBP12.35□□□□□ -0.43
VIM-202ENST00000421459 ZNF772Q68DY9 489 aaPredicted RBP12.34□□□□□ -0.43
VIM-202ENST00000421459 UPF1Q92900 1129 aaKnown RBP eCLIP12.34□□□□□ -0.43
VIM-202ENST00000421459 MST1RQ04912 1400 aa12.34□□□□□ -0.43
VIM-202ENST00000421459 SETBP1Q9Y6X0 1596 aa12.33□□□□□ -0.44
VIM-202ENST00000421459 ASXL1Q8IXJ9 1541 aa12.32□□□□□ -0.44
VIM-202ENST00000421459 RXRBP28702 533 aa12.32□□□□□ -0.44
VIM-202ENST00000421459 AFF2P51816 1311 aa12.32□□□□□ -0.44
VIM-202ENST00000421459 XRN1Q8IZH2 1706 aaKnown RBP12.31□□□□□ -0.44
VIM-202ENST00000421459 CLTCL1P53675 1640 aa12.31□□□□□ -0.44
VIM-202ENST00000421459 SPHKAPQ2M3C7 1700 aa12.31□□□□□ -0.44
VIM-202ENST00000421459 DCCP43146 1447 aa12.3□□□□□ -0.44
VIM-202ENST00000421459 NAIPQ13075 1403 aa12.3□□□□□ -0.44
VIM-202ENST00000421459 SHPRHQ149N8 1683 aa12.3□□□□□ -0.44
VIM-202ENST00000421459 LRRC59Q96AG4 307 aaKnown RBP12.3□□□□□ -0.44
VIM-202ENST00000421459 C8orf37Q96NL8 207 aa12.3□□□□□ -0.44
VIM-202ENST00000421459 ORAI2Q96SN7 254 aa12.3□□□□□ -0.44
VIM-202ENST00000421459 NEXMIFQ5QGS0 1516 aa12.3□□□□□ -0.44
VIM-202ENST00000421459 SETD5Q9C0A6 1442 aa12.29□□□□□ -0.44
VIM-202ENST00000421459 ADAMTS2O95450 1211 aa12.29□□□□□ -0.44
VIM-202ENST00000421459 FOXD1Q16676 465 aa12.29□□□□□ -0.44
VIM-202ENST00000421459 ROBO2Q9HCK4 1378 aa12.29□□□□□ -0.44
VIM-202ENST00000421459 ADGRL3Q9HAR2 1447 aa12.28□□□□□ -0.44
VIM-202ENST00000421459 QTRT2Q9H974 415 aaKnown RBP12.28□□□□□ -0.44
VIM-202ENST00000421459 PNPLA6Q8IY17 1366 aa12.28□□□□□ -0.44
VIM-202ENST00000421459 RRBP1Q9P2E9 1410 aaKnown RBP12.27□□□□□ -0.45
VIM-202ENST00000421459 C1orf167Q5SNV9 1468 aa12.27□□□□□ -0.45
VIM-202ENST00000421459 VGFO15240 615 aaPredicted RBP12.26□□□□□ -0.45
VIM-202ENST00000421459 SLC4A1APQ9BWU0 796 aaKnown RBP12.26□□□□□ -0.45
VIM-202ENST00000421459 NALCNQ8IZF0 1738 aa12.25□□□□□ -0.45
VIM-202ENST00000421459 NHSL1Q5SYE7 1610 aa12.25□□□□□ -0.45
VIM-202ENST00000421459 NGLY1Q96IV0 654 aa12.24□□□□□ -0.45
VIM-202ENST00000421459 RGS12O14924 1447 aa12.23□□□□□ -0.45
VIM-202ENST00000421459 NUTM2FA1L443 756 aa12.23□□□□□ -0.45
VIM-202ENST00000421459 RGL3Q3MIN7 710 aa12.23□□□□□ -0.45
VIM-202ENST00000421459 SOS2Q07890 1332 aaPredicted RBP12.22□□□□□ -0.45
VIM-202ENST00000421459 ADGRF5Q8IZF2 1346 aa12.22□□□□□ -0.45
VIM-202ENST00000421459 RBM6P78332 1123 aaKnown RBP12.22□□□□□ -0.45
VIM-202ENST00000421459 XPCQ01831 940 aaPredicted RBP12.22□□□□□ -0.45
VIM-202ENST00000421459 STK26Q9P289 416 aa12.22□□□□□ -0.45
VIM-202ENST00000421459 PTCH1Q13635 1447 aa12.21□□□□□ -0.45
VIM-202ENST00000421459 ESCO1Q5FWF5 840 aa12.21□□□□□ -0.45
VIM-202ENST00000421459 WAPLQ7Z5K2 1190 aa12.21□□□□□ -0.45
VIM-202ENST00000421459 HFM1A2PYH4 1435 aa12.2□□□□□ -0.46
VIM-202ENST00000421459 RPGRIP1LQ68CZ1 1315 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 102 ms