RNA–Protein interactions for RNA: ENST00000417545.4

TRIM48-201, Transcript of tripartite motif containing 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM48, Length 1,445 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM48-201ENST00000417545 TMEM131LA2VDJ0 1609 aa12.22□□□□□ -0.45
TRIM48-201ENST00000417545 RGL3Q3MIN7 710 aa12.22□□□□□ -0.45
TRIM48-201ENST00000417545 SIN3AQ96ST3 1273 aa12.22□□□□□ -0.45
TRIM48-201ENST00000417545 PPP1R15AO75807 674 aaPredicted RBP12.21□□□□□ -0.45
TRIM48-201ENST00000417545 THEMISQ8N1K5 641 aaPredicted RBP12.21□□□□□ -0.45
TRIM48-201ENST00000417545 HDGFP51858 240 aaKnown RBP12.2□□□□□ -0.46
TRIM48-201ENST00000417545 EID1Q9Y6B2 187 aa12.2□□□□□ -0.46
TRIM48-201ENST00000417545 BCANQ96GW7 911 aa12.19□□□□□ -0.46
TRIM48-201ENST00000417545 PPLO60437 1756 aa12.18□□□□□ -0.46
TRIM48-201ENST00000417545 NEURL4Q96JN8 1562 aa12.18□□□□□ -0.46
TRIM48-201ENST00000417545 POLR1AO95602 1720 aaPredicted RBP12.18□□□□□ -0.46
TRIM48-201ENST00000417545 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.17□□□□□ -0.46
TRIM48-201ENST00000417545 RIMS2Q9UQ26 1411 aa12.17□□□□□ -0.46
TRIM48-201ENST00000417545 RPGRIP1LQ68CZ1 1315 aa12.17□□□□□ -0.46
TRIM48-201ENST00000417545 IFT172Q9UG01 1749 aa12.16□□□□□ -0.46
TRIM48-201ENST00000417545 SPATA31E1Q6ZUB1 1445 aa12.16□□□□□ -0.46
TRIM48-201ENST00000417545 DCAF11Q8TEB1 546 aa12.16□□□□□ -0.46
TRIM48-201ENST00000417545 KDM2AQ9Y2K7 1162 aa12.16□□□□□ -0.46
TRIM48-201ENST00000417545 LMTK3Q96Q04 1460 aa12.16□□□□□ -0.46
TRIM48-201ENST00000417545 C1QBPQ07021 282 aaKnown RBP12.15□□□□□ -0.46
TRIM48-201ENST00000417545 NUTM2DQ5VT03 806 aaPredicted RBP12.15□□□□□ -0.46
TRIM48-201ENST00000417545 PPP4R3CPQ6ZMV5 832 aa12.15□□□□□ -0.46
TRIM48-201ENST00000417545 NEXMIFQ5QGS0 1516 aa12.15□□□□□ -0.46
TRIM48-201ENST00000417545 TMEM2Q9UHN6 1383 aa12.15□□□□□ -0.47
TRIM48-201ENST00000417545 VGFO15240 615 aaPredicted RBP12.14□□□□□ -0.47
TRIM48-201ENST00000417545 HSPA2P54652 639 aa12.14□□□□□ -0.47
TRIM48-201ENST00000417545 TXNDC2Q86VQ3 553 aa12.14□□□□□ -0.47
TRIM48-201ENST00000417545 ANKLE2Q86XL3 938 aa12.14□□□□□ -0.47
TRIM48-201ENST00000417545 SLIT1O75093 1534 aa12.14□□□□□ -0.47
TRIM48-201ENST00000417545 SCAF11Q99590 1463 aaKnown RBP12.13□□□□□ -0.47
TRIM48-201ENST00000417545 L3MBTL2Q969R5 705 aa12.11□□□□□ -0.47
TRIM48-201ENST00000417545 TIMELESSQ9UNS1 1208 aa12.11□□□□□ -0.47
TRIM48-201ENST00000417545 MYOM2P54296 1465 aa12.11□□□□□ -0.47
TRIM48-201ENST00000417545 ARHGAP23Q9P227 1491 aa12.11□□□□□ -0.47
TRIM48-201ENST00000417545 ZEB1P37275 1124 aaPredicted RBP12.11□□□□□ -0.47
TRIM48-201ENST00000417545 STAC3Q96MF2 364 aa12.11□□□□□ -0.47
TRIM48-201ENST00000417545 ZFYVE9O95405 1425 aa12.1□□□□□ -0.47
TRIM48-201ENST00000417545 IQGAP1P46940 1657 aa12.1□□□□□ -0.47
TRIM48-201ENST00000417545 LAMC1P11047 1609 aa12.1□□□□□ -0.47
TRIM48-201ENST00000417545 NCKAP5LQ9HCH0 1330 aa12.09□□□□□ -0.47
TRIM48-201ENST00000417545 NPHP4O75161 1426 aaPredicted RBP12.08□□□□□ -0.48
TRIM48-201ENST00000417545 PLEKHG1Q9ULL1 1385 aa12.08□□□□□ -0.48
TRIM48-201ENST00000417545 ADGRF5Q8IZF2 1346 aa12.07□□□□□ -0.48
TRIM48-201ENST00000417545 LTKP29376 864 aa12.06□□□□□ -0.48
TRIM48-201ENST00000417545 DIP2AQ14689 1571 aa12.06□□□□□ -0.48
TRIM48-201ENST00000417545 STRCQ7RTU9 1775 aa12.06□□□□□ -0.48
TRIM48-201ENST00000417545 SETBP1Q9Y6X0 1596 aa12.05□□□□□ -0.48
TRIM48-201ENST00000417545 PRAG1Q86YV5 1406 aa12.05□□□□□ -0.48
TRIM48-201ENST00000417545 KIAA1210Q9ULL0 1709 aa12.04□□□□□ -0.48
TRIM48-201ENST00000417545 PIK3C2GO75747 1445 aa12.04□□□□□ -0.48
TRIM48-201ENST00000417545 MED14O60244 1454 aa12.03□□□□□ -0.48
TRIM48-201ENST00000417545 SLC26A8Q96RN1 970 aa12.03□□□□□ -0.48
TRIM48-201ENST00000417545 TRPM1Q7Z4N2 1603 aa12.03□□□□□ -0.48
TRIM48-201ENST00000417545 ALKQ9UM73 1620 aa12.03□□□□□ -0.48
TRIM48-201ENST00000417545 NRXN1Q9ULB1 1477 aa12.03□□□□□ -0.48
TRIM48-201ENST00000417545 NRXN3Q9Y4C0 1643 aa12.03□□□□□ -0.48
TRIM48-201ENST00000417545 RNF216Q9NWF9 866 aaPredicted RBP12.03□□□□□ -0.48
TRIM48-201ENST00000417545 ROCK2O75116 1388 aaKnown RBP12.02□□□□□ -0.48
TRIM48-201ENST00000417545 CFAP70Q5T0N1 1121 aa12.02□□□□□ -0.49
TRIM48-201ENST00000417545 CNKSR2Q8WXI2 1034 aa12.02□□□□□ -0.49
TRIM48-201ENST00000417545 RALGAPBQ86X10 1494 aa12□□□□□ -0.49
TRIM48-201ENST00000417545 SETD1AO15047 1707 aaKnown RBP12□□□□□ -0.49
TRIM48-201ENST00000417545 C14orf93Q9H972 538 aaKnown RBP11.99□□□□□ -0.49
TRIM48-201ENST00000417545 TBX22Q9Y458 520 aa11.99□□□□□ -0.49
TRIM48-201ENST00000417545 ADAMTS13Q76LX8 1427 aa11.98□□□□□ -0.49
TRIM48-201ENST00000417545 NBPF8Q3BBV2 869 aa11.98□□□□□ -0.49
TRIM48-201ENST00000417545 CARD11Q9BXL7 1154 aa11.98□□□□□ -0.49
TRIM48-201ENST00000417545 STK26Q9P289 416 aa11.98□□□□□ -0.49
TRIM48-201ENST00000417545 TMEM132EQ6IEE7 984 aa11.97□□□□□ -0.49
TRIM48-201ENST00000417545 CHD2O14647 1828 aaKnown RBP11.97□□□□□ -0.49
TRIM48-201ENST00000417545 EIF3AQ14152 1382 aaKnown RBP11.96□□□□□ -0.49
TRIM48-201ENST00000417545 PIK3R4Q99570 1358 aa11.96□□□□□ -0.49
TRIM48-201ENST00000417545 KNDC1Q76NI1 1749 aa11.96□□□□□ -0.5
TRIM48-201ENST00000417545 YTHDC2Q9H6S0 1430 aaKnown RBP11.95□□□□□ -0.5
TRIM48-201ENST00000417545 METP08581 1390 aa11.95□□□□□ -0.5
TRIM48-201ENST00000417545 ASXL1Q8IXJ9 1541 aa11.95□□□□□ -0.5
TRIM48-201ENST00000417545 NBPF1Q3BBV0 1214 aa11.94□□□□□ -0.5
TRIM48-201ENST00000417545 LRPPRCP42704 1394 aaKnown RBP11.94□□□□□ -0.5
TRIM48-201ENST00000417545 ADGRB1O14514 1584 aa11.94□□□□□ -0.5
TRIM48-201ENST00000417545 C14orf37Q86TY3 774 aa11.94□□□□□ -0.5
TRIM48-201ENST00000417545 POGKQ9P215 609 aa11.94□□□□□ -0.5
TRIM48-201ENST00000417545 TRAK1Q9UPV9 953 aa11.94□□□□□ -0.5
TRIM48-201ENST00000417545 AMOTL2Q9Y2J4 779 aa11.94□□□□□ -0.5
TRIM48-201ENST00000417545 XRN1Q8IZH2 1706 aaKnown RBP11.93□□□□□ -0.5
TRIM48-201ENST00000417545 ARHGEF28Q8N1W1 1705 aaKnown RBP11.93□□□□□ -0.5
TRIM48-201ENST00000417545 NWD1Q149M9 1564 aa11.93□□□□□ -0.5
TRIM48-201ENST00000417545 NKTRP30414 1462 aaKnown RBP11.92□□□□□ -0.5
TRIM48-201ENST00000417545 KCNA6P17658 529 aa11.92□□□□□ -0.5
TRIM48-201ENST00000417545 CPS1P31327 1500 aa11.92□□□□□ -0.5
TRIM48-201ENST00000417545 PROSER2Q86WR7 435 aaPredicted RBP11.91□□□□□ -0.5
TRIM48-201ENST00000417545 ZNF335Q9H4Z2 1342 aaPredicted RBP11.91□□□□□ -0.5
TRIM48-201ENST00000417545 GPRASP1Q5JY77 1395 aa11.91□□□□□ -0.5
TRIM48-201ENST00000417545 USP47Q96K76 1375 aa11.91□□□□□ -0.5
TRIM48-201ENST00000417545 QRICH2Q9H0J4 1663 aa11.91□□□□□ -0.5
TRIM48-201ENST00000417545 PTPRUQ92729 1446 aa11.9□□□□□ -0.5
TRIM48-201ENST00000417545 DLC1Q96QB1 1528 aa11.9□□□□□ -0.5
TRIM48-201ENST00000417545 EIF4G2P78344 907 aaKnown RBP eCLIP11.9□□□□□ -0.5
TRIM48-201ENST00000417545 SAFB2Q14151 953 aaKnown RBP eCLIP11.9□□□□□ -0.5
TRIM48-201ENST00000417545 ABCC11Q96J66 1382 aa11.9□□□□□ -0.5
TRIM48-201ENST00000417545 STRCP1A6NGW2 1772 aa11.9□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms