RNA–Protein interactions for RNA: ENST00000414861.6

RIF1-202, Transcript of replication timing regulatory factor 1, humanhuman

TSL 1 (best)

Gene RIF1, Length 2,534 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-202ENST00000414861 SETD1BQ9UPS6 1966 aaKnown RBP13.82□□□□□ -0.2
RIF1-202ENST00000414861 ADGRF5Q8IZF2 1346 aa13.82□□□□□ -0.2
RIF1-202ENST00000414861 NRXN1Q9ULB1 1477 aa13.82□□□□□ -0.2
RIF1-202ENST00000414861 STAG3Q9UJ98 1225 aa13.82□□□□□ -0.2
RIF1-202ENST00000414861 NUTM2DQ5VT03 806 aaPredicted RBP13.82□□□□□ -0.2
RIF1-202ENST00000414861 CEP170BQ9Y4F5 1589 aaPredicted RBP13.81□□□□□ -0.2
RIF1-202ENST00000414861 KDM4FA0A1W2PPD8 638 aa13.81□□□□□ -0.2
RIF1-202ENST00000414861 ZNF142P52746 1687 aaPredicted RBP13.81□□□□□ -0.2
RIF1-202ENST00000414861 RPGRIP1LQ68CZ1 1315 aa13.8□□□□□ -0.2
RIF1-202ENST00000414861 ZFYVE9O95405 1425 aa13.8□□□□□ -0.2
RIF1-202ENST00000414861 PIK3C2GO75747 1445 aa13.79□□□□□ -0.2
RIF1-202ENST00000414861 RIMS2Q9UQ26 1411 aa13.79□□□□□ -0.2
RIF1-202ENST00000414861 KIAA1210Q9ULL0 1709 aa13.78□□□□□ -0.2
RIF1-202ENST00000414861 NBPF1Q3BBV0 1214 aa13.78□□□□□ -0.2
RIF1-202ENST00000414861 STAC3Q96MF2 364 aa13.78□□□□□ -0.2
RIF1-202ENST00000414861 ROCK2O75116 1388 aaKnown RBP13.77□□□□□ -0.21
RIF1-202ENST00000414861 TMEM2Q9UHN6 1383 aa13.77□□□□□ -0.21
RIF1-202ENST00000414861 SENP3Q9H4L4 574 aaPredicted RBP13.76□□□□□ -0.21
RIF1-202ENST00000414861 LAMC1P11047 1609 aa13.75□□□□□ -0.21
RIF1-202ENST00000414861 GPRASP1Q5JY77 1395 aa13.75□□□□□ -0.21
RIF1-202ENST00000414861 SLIT1O75093 1534 aa13.75□□□□□ -0.21
RIF1-202ENST00000414861 VGFO15240 615 aaPredicted RBP13.75□□□□□ -0.21
RIF1-202ENST00000414861 ARHGAP23Q9P227 1491 aa13.75□□□□□ -0.21
RIF1-202ENST00000414861 NRXN3Q9Y4C0 1643 aa13.74□□□□□ -0.21
RIF1-202ENST00000414861 CFAP70Q5T0N1 1121 aa13.74□□□□□ -0.21
RIF1-202ENST00000414861 HIRIP3Q9BW71 556 aaPredicted RBP13.74□□□□□ -0.21
RIF1-202ENST00000414861 IQGAP1P46940 1657 aa13.73□□□□□ -0.21
RIF1-202ENST00000414861 CARD11Q9BXL7 1154 aa13.73□□□□□ -0.21
RIF1-202ENST00000414861 USP47Q96K76 1375 aa13.72□□□□□ -0.21
RIF1-202ENST00000414861 SETD1AO15047 1707 aaKnown RBP13.72□□□□□ -0.21
RIF1-202ENST00000414861 ADGRB1O14514 1584 aa13.72□□□□□ -0.21
RIF1-202ENST00000414861 ASXL1Q8IXJ9 1541 aa13.72□□□□□ -0.21
RIF1-202ENST00000414861 HSPA5P11021 654 aaKnown RBP13.71□□□□□ -0.21
RIF1-202ENST00000414861 LTKP29376 864 aa13.71□□□□□ -0.21
RIF1-202ENST00000414861 SETBP1Q9Y6X0 1596 aa13.71□□□□□ -0.21
RIF1-202ENST00000414861 ALKQ9UM73 1620 aa13.71□□□□□ -0.21
RIF1-202ENST00000414861 ZNF316A6NFI3 1004 aaPredicted RBP13.7□□□□□ -0.22
RIF1-202ENST00000414861 THEMISQ8N1K5 641 aaPredicted RBP13.7□□□□□ -0.22
RIF1-202ENST00000414861 C14orf93Q9H972 538 aaKnown RBP13.7□□□□□ -0.22
RIF1-202ENST00000414861 EIF4G2P78344 907 aaKnown RBP eCLIP13.7□□□□□ -0.22
RIF1-202ENST00000414861 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.69□□□□□ -0.22
RIF1-202ENST00000414861 SCAF11Q99590 1463 aaKnown RBP13.69□□□□□ -0.22
RIF1-202ENST00000414861 TXNDC2Q86VQ3 553 aa13.68□□□□□ -0.22
RIF1-202ENST00000414861 TMEM132EQ6IEE7 984 aa13.67□□□□□ -0.22
RIF1-202ENST00000414861 PLEKHG1Q9ULL1 1385 aa13.67□□□□□ -0.22
RIF1-202ENST00000414861 ADAMTS13Q76LX8 1427 aa13.66□□□□□ -0.22
RIF1-202ENST00000414861 EID1Q9Y6B2 187 aa13.66□□□□□ -0.22
RIF1-202ENST00000414861 POLR1AO95602 1720 aaPredicted RBP13.66□□□□□ -0.22
RIF1-202ENST00000414861 HDGFP51858 240 aaKnown RBP13.65□□□□□ -0.22
RIF1-202ENST00000414861 LMTK3Q96Q04 1460 aa13.65□□□□□ -0.22
RIF1-202ENST00000414861 ARHGEF28Q8N1W1 1705 aaKnown RBP13.65□□□□□ -0.23
RIF1-202ENST00000414861 ST20-MTHFSA0A0A6YYL1 179 aa13.64□□□□□ -0.23
RIF1-202ENST00000414861 MED14O60244 1454 aa13.63□□□□□ -0.23
RIF1-202ENST00000414861 METP08581 1390 aa13.63□□□□□ -0.23
RIF1-202ENST00000414861 BCANQ96GW7 911 aa13.62□□□□□ -0.23
RIF1-202ENST00000414861 YTHDC2Q9H6S0 1430 aaKnown RBP13.62□□□□□ -0.23
RIF1-202ENST00000414861 TRAK1Q9UPV9 953 aa13.61□□□□□ -0.23
RIF1-202ENST00000414861 C11orf95C9JLR9 678 aaPredicted RBP13.61□□□□□ -0.23
RIF1-202ENST00000414861 ANKLE2Q86XL3 938 aa13.61□□□□□ -0.23
RIF1-202ENST00000414861 DIP2AQ14689 1571 aa13.6□□□□□ -0.23
RIF1-202ENST00000414861 HSPA2P54652 639 aa13.6□□□□□ -0.23
RIF1-202ENST00000414861 SLC26A8Q96RN1 970 aa13.6□□□□□ -0.23
RIF1-202ENST00000414861 QRICH2Q9H0J4 1663 aa13.6□□□□□ -0.23
RIF1-202ENST00000414861 TESK2Q96S53 571 aa13.6□□□□□ -0.23
RIF1-202ENST00000414861 EIF3AQ14152 1382 aaKnown RBP13.6□□□□□ -0.23
RIF1-202ENST00000414861 STK26Q9P289 416 aa13.59□□□□□ -0.23
RIF1-202ENST00000414861 KNDC1Q76NI1 1749 aa13.59□□□□□ -0.23
RIF1-202ENST00000414861 NCKAP5LQ9HCH0 1330 aa13.59□□□□□ -0.23
RIF1-202ENST00000414861 LRPPRCP42704 1394 aaKnown RBP13.58□□□□□ -0.23
RIF1-202ENST00000414861 NPHP4O75161 1426 aaPredicted RBP13.58□□□□□ -0.24
RIF1-202ENST00000414861 WASHC2AQ641Q2 1341 aa13.58□□□□□ -0.24
RIF1-202ENST00000414861 PTPRUQ92729 1446 aa13.58□□□□□ -0.24
RIF1-202ENST00000414861 DISP3Q9P2K9 1392 aa13.56□□□□□ -0.24
RIF1-202ENST00000414861 DLC1Q96QB1 1528 aa13.56□□□□□ -0.24
RIF1-202ENST00000414861 STRCQ7RTU9 1775 aa13.56□□□□□ -0.24
RIF1-202ENST00000414861 KIF7Q2M1P5 1343 aa13.56□□□□□ -0.24
RIF1-202ENST00000414861 CPS1P31327 1500 aa13.56□□□□□ -0.24
RIF1-202ENST00000414861 CCDC7Q96M83 1385 aa13.56□□□□□ -0.24
RIF1-202ENST00000414861 CENPJQ9HC77 1338 aaPredicted RBP13.56□□□□□ -0.24
RIF1-202ENST00000414861 XRN1Q8IZH2 1706 aaKnown RBP13.56□□□□□ -0.24
RIF1-202ENST00000414861 TECPR2O15040 1411 aa13.55□□□□□ -0.24
RIF1-202ENST00000414861 TBX22Q9Y458 520 aa13.55□□□□□ -0.24
RIF1-202ENST00000414861 ABCC11Q96J66 1382 aa13.55□□□□□ -0.24
RIF1-202ENST00000414861 PLEKHH1Q9ULM0 1364 aa13.54□□□□□ -0.24
RIF1-202ENST00000414861 SBNO2Q9Y2G9 1366 aa13.54□□□□□ -0.24
RIF1-202ENST00000414861 CHD2O14647 1828 aaKnown RBP13.54□□□□□ -0.24
RIF1-202ENST00000414861 SAFB2Q14151 953 aaKnown RBP eCLIP13.53□□□□□ -0.24
RIF1-202ENST00000414861 PRAM1Q96QH2 718 aa13.53□□□□□ -0.24
RIF1-202ENST00000414861 ROBO2Q9HCK4 1378 aa13.53□□□□□ -0.24
RIF1-202ENST00000414861 TULP4Q9NRJ4 1543 aa13.52□□□□□ -0.25
RIF1-202ENST00000414861 WAPLQ7Z5K2 1190 aa13.51□□□□□ -0.25
RIF1-202ENST00000414861 DDX10Q13206 875 aaKnown RBP13.51□□□□□ -0.25
RIF1-202ENST00000414861 PIK3R4Q99570 1358 aa13.5□□□□□ -0.25
RIF1-202ENST00000414861 POLR3GLQ9BT43 218 aa13.5□□□□□ -0.25
RIF1-202ENST00000414861 AMOTL2Q9Y2J4 779 aa13.5□□□□□ -0.25
RIF1-202ENST00000414861 PTCH1Q13635 1447 aa13.5□□□□□ -0.25
RIF1-202ENST00000414861 FAM135BQ49AJ0 1406 aa13.5□□□□□ -0.25
RIF1-202ENST00000414861 TMF1P82094 1093 aa13.5□□□□□ -0.25
RIF1-202ENST00000414861 DIEXFQ68CQ4 756 aaKnown RBP13.49□□□□□ -0.25
RIF1-202ENST00000414861 POGKQ9P215 609 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms