RNA–Protein interactions for RNA: ENST00000413219.6

SDCBP-202, Transcript of syndecan binding protein, humanhuman

APPRIS P3 TSL 2 BASIC

Gene SDCBP, Length 2,086 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-202ENST00000413219 NPC1L1Q9UHC9 1359 aa23.04■■□□□ 1.28
SDCBP-202ENST00000413219 MADDQ8WXG6 1647 aa23.03■■□□□ 1.28
SDCBP-202ENST00000413219 EIF3AQ14152 1382 aaKnown RBP23.02■■□□□ 1.28
SDCBP-202ENST00000413219 AMER1Q5JTC6 1135 aaPredicted RBP23.02■■□□□ 1.28
SDCBP-202ENST00000413219 STAC3Q96MF2 364 aa23.02■■□□□ 1.28
SDCBP-202ENST00000413219 ASXL1Q8IXJ9 1541 aa23.01■■□□□ 1.27
SDCBP-202ENST00000413219 SKAP1Q86WV1 359 aa23.01■■□□□ 1.27
SDCBP-202ENST00000413219 SCAPERQ9BY12 1400 aa23■■□□□ 1.27
SDCBP-202ENST00000413219 SLFN5Q08AF3 891 aa22.99■■□□□ 1.27
SDCBP-202ENST00000413219 TRMT2AQ8IZ69 625 aaKnown RBP22.99■■□□□ 1.27
SDCBP-202ENST00000413219 IL27Q8NEV9 243 aa22.99■■□□□ 1.27
SDCBP-202ENST00000413219 ABCC2Q92887 1545 aa22.98■■□□□ 1.27
SDCBP-202ENST00000413219 C8orf34Q49A92 452 aa22.98■■□□□ 1.27
SDCBP-202ENST00000413219 DAXXQ9UER7 740 aaPredicted RBP22.98■■□□□ 1.27
SDCBP-202ENST00000413219 SCAF11Q99590 1463 aaKnown RBP22.98■■□□□ 1.27
SDCBP-202ENST00000413219 NFKBIBQ15653 356 aa22.97■■□□□ 1.27
SDCBP-202ENST00000413219 GSE1Q14687 1217 aa22.96■■□□□ 1.27
SDCBP-202ENST00000413219 SPHKAPQ2M3C7 1700 aa22.95■■□□□ 1.27
SDCBP-202ENST00000413219 TRPM2O94759 1503 aa22.94■■□□□ 1.26
SDCBP-202ENST00000413219 NGEFQ8N5V2 710 aa22.93■■□□□ 1.26
SDCBP-202ENST00000413219 NKTRP30414 1462 aaKnown RBP22.92■■□□□ 1.26
SDCBP-202ENST00000413219 MYOM1P52179 1685 aa22.92■■□□□ 1.26
SDCBP-202ENST00000413219 CEP152O94986 1710 aa22.9■■□□□ 1.26
SDCBP-202ENST00000413219 PTPRTO14522 1441 aa22.89■■□□□ 1.25
SDCBP-202ENST00000413219 PLCH2O75038 1416 aa22.88■■□□□ 1.25
SDCBP-202ENST00000413219 KIAA1210Q9ULL0 1709 aa22.88■■□□□ 1.25
SDCBP-202ENST00000413219 SHROOM2Q13796 1616 aa22.87■■□□□ 1.25
SDCBP-202ENST00000413219 SLC24A1O60721 1099 aa22.87■■□□□ 1.25
SDCBP-202ENST00000413219 NINLQ9Y2I6 1382 aa22.86■■□□□ 1.25
SDCBP-202ENST00000413219 E9PSI1 815 aa22.86■■□□□ 1.25
SDCBP-202ENST00000413219 ABCC1P33527 1531 aa22.86■■□□□ 1.25
SDCBP-202ENST00000413219 KDM5AP29375 1690 aaKnown RBP22.86■■□□□ 1.25
SDCBP-202ENST00000413219 NEURL4Q96JN8 1562 aa22.86■■□□□ 1.25
SDCBP-202ENST00000413219 SLC4A3P48751 1232 aa22.85■■□□□ 1.25
SDCBP-202ENST00000413219 EFCAB2Q5VUJ9 269 aa22.83■■□□□ 1.24
SDCBP-202ENST00000413219 VIRMAQ69YN4 1812 aaKnown RBP22.82■■□□□ 1.24
SDCBP-202ENST00000413219 CLTCL1P53675 1640 aa22.82■■□□□ 1.24
SDCBP-202ENST00000413219 RTEL1-TNFRSF6BF6WH68 1400 aa22.82■■□□□ 1.24
SDCBP-202ENST00000413219 CGNL1Q0VF96 1302 aa22.82■■□□□ 1.24
SDCBP-202ENST00000413219 PDE3AQ14432 1141 aa22.81■■□□□ 1.24
SDCBP-202ENST00000413219 APAF1O14727 1248 aa22.81■■□□□ 1.24
SDCBP-202ENST00000413219 RGS3P49796 1198 aa22.81■■□□□ 1.24
SDCBP-202ENST00000413219 FRAT1Q92837 279 aaPredicted RBP22.81■■□□□ 1.24
SDCBP-202ENST00000413219 DEPDC5O75140 1603 aa22.8■■□□□ 1.24
SDCBP-202ENST00000413219 SPINK5Q9NQ38 1064 aaPredicted RBP22.8■■□□□ 1.24
SDCBP-202ENST00000413219 CCDC146Q8IYE0 955 aa22.79■■□□□ 1.24
SDCBP-202ENST00000413219 TET3O43151 1660 aa22.79■■□□□ 1.24
SDCBP-202ENST00000413219 ANO8Q9HCE9 1232 aaPredicted RBP22.78■■□□□ 1.24
SDCBP-202ENST00000413219 TRAPPC8Q9Y2L5 1435 aa22.78■■□□□ 1.24
SDCBP-202ENST00000413219 RTN4Q9NQC3 1192 aaKnown RBP22.78■■□□□ 1.24
SDCBP-202ENST00000413219 MAPK8IP3Q9UPT6 1336 aa22.78■■□□□ 1.24
SDCBP-202ENST00000413219 BCAR3O75815 825 aa22.77■■□□□ 1.23
SDCBP-202ENST00000413219 BRPF3Q9ULD4 1205 aa22.75■■□□□ 1.23
SDCBP-202ENST00000413219 ERVK-7P63135 1459 aa22.75■■□□□ 1.23
SDCBP-202ENST00000413219 MYOM2P54296 1465 aa22.74■■□□□ 1.23
SDCBP-202ENST00000413219 AAMPQ13685 434 aa22.74■■□□□ 1.23
SDCBP-202ENST00000413219 POLR3AO14802 1390 aaPredicted RBP22.74■■□□□ 1.23
SDCBP-202ENST00000413219 ZFYVE16Q7Z3T8 1539 aa22.74■■□□□ 1.23
SDCBP-202ENST00000413219 ARAP3Q8WWN8 1544 aa22.74■■□□□ 1.23
SDCBP-202ENST00000413219 VWDEQ8N2E2 1590 aa22.73■■□□□ 1.23
SDCBP-202ENST00000413219 CHD1O14646 1710 aa22.73■■□□□ 1.23
SDCBP-202ENST00000413219 SPAG9O60271 1321 aaKnown RBP22.73■■□□□ 1.23
SDCBP-202ENST00000413219 USP19O94966 1318 aa22.73■■□□□ 1.23
SDCBP-202ENST00000413219 ZMYM3Q14202 1370 aa22.73■■□□□ 1.23
SDCBP-202ENST00000413219 FRAT2O75474 233 aaPredicted RBP22.72■■□□□ 1.23
SDCBP-202ENST00000413219 IGHDP01880 384 aa22.72■■□□□ 1.23
SDCBP-202ENST00000413219 CLUAP1Q96AJ1 413 aa22.72■■□□□ 1.23
SDCBP-202ENST00000413219 CENPJQ9HC77 1338 aaPredicted RBP22.72■■□□□ 1.23
SDCBP-202ENST00000413219 MAP3K4Q9Y6R4 1608 aa22.71■■□□□ 1.23
SDCBP-202ENST00000413219 KANK1Q14678 1352 aa22.7■■□□□ 1.22
SDCBP-202ENST00000413219 SBNO2Q9Y2G9 1366 aa22.7■■□□□ 1.22
SDCBP-202ENST00000413219 UHRF1BP1LA0JNW5 1464 aa22.7■■□□□ 1.22
SDCBP-202ENST00000413219 ZCCHC11Q5TAX3 1644 aaKnown RBP22.69■■□□□ 1.22
SDCBP-202ENST00000413219 MYO3AQ8NEV4 1616 aa22.69■■□□□ 1.22
SDCBP-202ENST00000413219 BECN1Q14457 450 aa22.68■■□□□ 1.22
SDCBP-202ENST00000413219 ABCA6Q8N139 1617 aa22.68■■□□□ 1.22
SDCBP-202ENST00000413219 WWC1Q8IX03 1113 aa22.67■■□□□ 1.22
SDCBP-202ENST00000413219 CARD14Q9BXL6 1004 aa22.67■■□□□ 1.22
SDCBP-202ENST00000413219 DMRT2Q9Y5R5 561 aa22.67■■□□□ 1.22
SDCBP-202ENST00000413219 PMFBP1Q8TBY8 1022 aa22.65■■□□□ 1.22
SDCBP-202ENST00000413219 ERCC6L2Q5T890 1561 aa22.65■■□□□ 1.22
SDCBP-202ENST00000413219 NLRP1Q9C000 1473 aa22.64■■□□□ 1.22
SDCBP-202ENST00000413219 CANXP27824 592 aaKnown RBP22.64■■□□□ 1.21
SDCBP-202ENST00000413219 NRXN1Q9ULB1 1477 aa22.62■■□□□ 1.21
SDCBP-202ENST00000413219 SHPRHQ149N8 1683 aa22.62■■□□□ 1.21
SDCBP-202ENST00000413219 COG6Q9Y2V7 657 aa22.62■■□□□ 1.21
SDCBP-202ENST00000413219 INO80Q9ULG1 1556 aaPredicted RBP22.62■■□□□ 1.21
SDCBP-202ENST00000413219 IFT172Q9UG01 1749 aa22.62■■□□□ 1.21
SDCBP-202ENST00000413219 CFAP70Q5T0N1 1121 aa22.61■■□□□ 1.21
SDCBP-202ENST00000413219 PANK1Q8TE04 598 aa22.61■■□□□ 1.21
SDCBP-202ENST00000413219 IQSEC2Q5JU85 1478 aa22.61■■□□□ 1.21
SDCBP-202ENST00000413219 PHF23Q9BUL5 403 aaPredicted RBP22.61■■□□□ 1.21
SDCBP-202ENST00000413219 ATP7AQ04656 1500 aa22.6■■□□□ 1.21
SDCBP-202ENST00000413219 RUNDC1Q96C34 613 aa22.59■■□□□ 1.21
SDCBP-202ENST00000413219 RARSP54136 660 aaKnown RBP22.59■■□□□ 1.21
SDCBP-202ENST00000413219 NCBP3Q53F19 620 aaKnown RBP22.59■■□□□ 1.21
SDCBP-202ENST00000413219 WDR63Q8IWG1 891 aa22.59■■□□□ 1.21
SDCBP-202ENST00000413219 AFAP1Q8N556 730 aa22.59■■□□□ 1.21
SDCBP-202ENST00000413219 SETBP1Q9Y6X0 1596 aa22.58■■□□□ 1.21
SDCBP-202ENST00000413219 SEC24BO95487 1268 aa22.58■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms