RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 SLC26A8Q96RN1 970 aa11.17□□□□□ -0.62
SYNE1-211ENST00000413186 CCDC7Q96M83 1385 aa11.17□□□□□ -0.62
SYNE1-211ENST00000413186 PRAM1Q96QH2 718 aa11.17□□□□□ -0.62
SYNE1-211ENST00000413186 NPM2Q86SE8 214 aaKnown RBP11.17□□□□□ -0.62
SYNE1-211ENST00000413186 ADGBQ8N7X0 1667 aa11.16□□□□□ -0.62
SYNE1-211ENST00000413186 ZMYM3Q14202 1370 aa11.16□□□□□ -0.62
SYNE1-211ENST00000413186 COG3Q96JB2 828 aa11.16□□□□□ -0.62
SYNE1-211ENST00000413186 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.15□□□□□ -0.62
SYNE1-211ENST00000413186 KIF7Q2M1P5 1343 aa11.15□□□□□ -0.62
SYNE1-211ENST00000413186 PSME1Q06323 249 aa11.14□□□□□ -0.63
SYNE1-211ENST00000413186 DMRT2Q9Y5R5 561 aa11.14□□□□□ -0.63
SYNE1-211ENST00000413186 A0A0G2JS52 829 aa11.14□□□□□ -0.63
SYNE1-211ENST00000413186 NOS1P29475 1434 aa11.13□□□□□ -0.63
SYNE1-211ENST00000413186 ABCA9Q8IUA7 1624 aa11.13□□□□□ -0.63
SYNE1-211ENST00000413186 MYBBP1AQ9BQG0 1328 aaKnown RBP11.13□□□□□ -0.63
SYNE1-211ENST00000413186 AMPHP49418 695 aa11.13□□□□□ -0.63
SYNE1-211ENST00000413186 YEATS2Q9ULM3 1422 aa11.13□□□□□ -0.63
SYNE1-211ENST00000413186 U2AF1L5P0DN76 240 aaPredicted RBP11.13□□□□□ -0.63
SYNE1-211ENST00000413186 U2AF1Q01081 240 aaKnown RBP eCLIP11.13□□□□□ -0.63
SYNE1-211ENST00000413186 MAST1Q9Y2H9 1570 aa11.12□□□□□ -0.63
SYNE1-211ENST00000413186 ADGRF5Q8IZF2 1346 aa11.12□□□□□ -0.63
SYNE1-211ENST00000413186 CSB-PGBD3P0DP91 1061 aa11.12□□□□□ -0.63
SYNE1-211ENST00000413186 NEUROD2Q15784 382 aa11.12□□□□□ -0.63
SYNE1-211ENST00000413186 C14orf93Q9H972 538 aaKnown RBP11.12□□□□□ -0.63
SYNE1-211ENST00000413186 TSPOAP1O95153 1857 aa11.12□□□□□ -0.63
SYNE1-211ENST00000413186 PZPP20742 1482 aa11.12□□□□□ -0.63
SYNE1-211ENST00000413186 CABP2Q9NPB3 220 aa11.12□□□□□ -0.63
SYNE1-211ENST00000413186 HECW2Q9P2P5 1572 aa11.12□□□□□ -0.63
SYNE1-211ENST00000413186 CDC42BPAQ5VT25 1732 aa11.12□□□□□ -0.63
SYNE1-211ENST00000413186 ATAD2Q6PL18 1390 aa11.12□□□□□ -0.63
SYNE1-211ENST00000413186 FKBP8Q14318 412 aa11.12□□□□□ -0.63
SYNE1-211ENST00000413186 GCC2Q8IWJ2 1684 aa11.11□□□□□ -0.63
SYNE1-211ENST00000413186 GPRASP1Q5JY77 1395 aa11.11□□□□□ -0.63
SYNE1-211ENST00000413186 WASHC2AQ641Q2 1341 aa11.11□□□□□ -0.63
SYNE1-211ENST00000413186 ZNF692Q9BU19 519 aaPredicted RBP11.11□□□□□ -0.63
SYNE1-211ENST00000413186 PRKRIP1Q9H875 184 aaPredicted RBP11.1□□□□□ -0.63
SYNE1-211ENST00000413186 CALD1Q05682 793 aaKnown RBP11.1□□□□□ -0.63
SYNE1-211ENST00000413186 CDK19Q9BWU1 502 aa11.09□□□□□ -0.63
SYNE1-211ENST00000413186 AMER1Q5JTC6 1135 aaPredicted RBP11.09□□□□□ -0.63
SYNE1-211ENST00000413186 RTF1Q92541 710 aaKnown RBP11.09□□□□□ -0.63
SYNE1-211ENST00000413186 RIMS2Q9UQ26 1411 aa11.09□□□□□ -0.63
SYNE1-211ENST00000413186 SCAF11Q99590 1463 aaKnown RBP11.08□□□□□ -0.64
SYNE1-211ENST00000413186 AMOTL2Q9Y2J4 779 aa11.08□□□□□ -0.64
SYNE1-211ENST00000413186 ARHGEF12Q9NZN5 1544 aa11.07□□□□□ -0.64
SYNE1-211ENST00000413186 CCDC61Q9Y6R9 512 aa11.07□□□□□ -0.64
SYNE1-211ENST00000413186 ESCO1Q5FWF5 840 aa11.06□□□□□ -0.64
SYNE1-211ENST00000413186 LAS1LQ9Y4W2 734 aaKnown RBP11.06□□□□□ -0.64
SYNE1-211ENST00000413186 CHMP4AQ9BY43 222 aa11.06□□□□□ -0.64
SYNE1-211ENST00000413186 PLXNC1O60486 1568 aa11.06□□□□□ -0.64
SYNE1-211ENST00000413186 LMOD3Q0VAK6 560 aa11.05□□□□□ -0.64
SYNE1-211ENST00000413186 KDM5DQ9BY66 1539 aa11.05□□□□□ -0.64
SYNE1-211ENST00000413186 KDM6BO15054 1643 aa11.05□□□□□ -0.64
SYNE1-211ENST00000413186 UHRF1BP1Q6BDS2 1440 aa11.05□□□□□ -0.64
SYNE1-211ENST00000413186 CDK11BP21127 795 aaKnown RBP11.04□□□□□ -0.64
SYNE1-211ENST00000413186 GLI2P10070 1586 aa11.04□□□□□ -0.64
SYNE1-211ENST00000413186 NLRP6P59044 892 aa11.04□□□□□ -0.64
SYNE1-211ENST00000413186 CABP1Q9NZU7 370 aa11.04□□□□□ -0.64
SYNE1-211ENST00000413186 PRAG1Q86YV5 1406 aa11.04□□□□□ -0.64
SYNE1-211ENST00000413186 MS4A1P11836 297 aa11.03□□□□□ -0.64
SYNE1-211ENST00000413186 SLC12A5Q9H2X9 1139 aa11.03□□□□□ -0.64
SYNE1-211ENST00000413186 NPATQ14207 1427 aa11.03□□□□□ -0.64
SYNE1-211ENST00000413186 RALGAPBQ86X10 1494 aa11.03□□□□□ -0.64
SYNE1-211ENST00000413186 EIF2AK4Q9P2K8 1649 aaKnown RBP11.03□□□□□ -0.64
SYNE1-211ENST00000413186 NGEFQ8N5V2 710 aa11.03□□□□□ -0.64
SYNE1-211ENST00000413186 NUDT16Q96DE0 195 aaKnown RBP11.03□□□□□ -0.64
SYNE1-211ENST00000413186 CDC42BPBQ9Y5S2 1711 aa11.02□□□□□ -0.64
SYNE1-211ENST00000413186 WAPLQ7Z5K2 1190 aa11.02□□□□□ -0.64
SYNE1-211ENST00000413186 DIAPH1O60610 1272 aaKnown RBP11.02□□□□□ -0.65
SYNE1-211ENST00000413186 TBX22Q9Y458 520 aa11.02□□□□□ -0.65
SYNE1-211ENST00000413186 GGNBP2Q9H3C7 697 aa11.02□□□□□ -0.65
SYNE1-211ENST00000413186 LTV1Q96GA3 475 aaPredicted RBP11.02□□□□□ -0.65
SYNE1-211ENST00000413186 ABTB2Q8N961 1025 aa11.01□□□□□ -0.65
SYNE1-211ENST00000413186 PMFBP1Q8TBY8 1022 aa11.01□□□□□ -0.65
SYNE1-211ENST00000413186 CHMP4BQ9H444 224 aaKnown RBP11.01□□□□□ -0.65
SYNE1-211ENST00000413186 MYH16Q9H6N6 1097 aa11.01□□□□□ -0.65
SYNE1-211ENST00000413186 CCDC9Q9Y3X0 531 aaKnown RBP11.01□□□□□ -0.65
SYNE1-211ENST00000413186 WASLO00401 505 aaPredicted RBP11.01□□□□□ -0.65
SYNE1-211ENST00000413186 EVA1CP58658 441 aa11□□□□□ -0.65
SYNE1-211ENST00000413186 PDE3BQ13370 1112 aa11□□□□□ -0.65
SYNE1-211ENST00000413186 NINLQ9Y2I6 1382 aa11□□□□□ -0.65
SYNE1-211ENST00000413186 SENP3-EIF4A1A0A087X0R7 540 aa10.99□□□□□ -0.65
SYNE1-211ENST00000413186 ERICH6BQ5W0A0 696 aa10.99□□□□□ -0.65
SYNE1-211ENST00000413186 CCDC136Q96JN2 1154 aa10.99□□□□□ -0.65
SYNE1-211ENST00000413186 CADPS2Q86UW7 1296 aa10.99□□□□□ -0.65
SYNE1-211ENST00000413186 FTSJ3Q8IY81 847 aaKnown RBP10.98□□□□□ -0.65
SYNE1-211ENST00000413186 BRD4O60885 1362 aaPredicted RBP10.98□□□□□ -0.65
SYNE1-211ENST00000413186 ARHGAP31Q2M1Z3 1444 aa10.98□□□□□ -0.65
SYNE1-211ENST00000413186 ANP32AP39687 249 aaKnown RBP10.98□□□□□ -0.65
SYNE1-211ENST00000413186 PUS7Q96PZ0 661 aaKnown RBP10.98□□□□□ -0.65
SYNE1-211ENST00000413186 LRRIQ1Q96JM4 1722 aa10.98□□□□□ -0.65
SYNE1-211ENST00000413186 TMEM2Q9UHN6 1383 aa10.97□□□□□ -0.65
SYNE1-211ENST00000413186 DIP2BQ9P265 1576 aa10.97□□□□□ -0.65
SYNE1-211ENST00000413186 GOLGA2Q08379 1002 aa10.97□□□□□ -0.65
SYNE1-211ENST00000413186 PHF8Q9UPP1 1060 aa10.97□□□□□ -0.65
SYNE1-211ENST00000413186 BCL11AQ9H165 835 aa10.96□□□□□ -0.65
SYNE1-211ENST00000413186 LRPPRCP42704 1394 aaKnown RBP10.95□□□□□ -0.66
SYNE1-211ENST00000413186 NLRP1Q9C000 1473 aa10.95□□□□□ -0.66
SYNE1-211ENST00000413186 ABCC3O15438 1527 aa10.95□□□□□ -0.66
SYNE1-211ENST00000413186 MTHFSP49914 203 aa10.95□□□□□ -0.66
SYNE1-211ENST00000413186 PTPRTO14522 1441 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms