RNA–Protein interactions for RNA: ENST00000411525.1

LINC00539-201, long intergenic non-protein coding RNA 539, humanhuman

TSL 3

Gene LINC00539, Length 664 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-201ENST00000411525 TET3O43151 1660 aa16.39■□□□□ 0.21
LINC00539-201ENST00000411525 MED1Q15648 1581 aaPredicted RBP16.38■□□□□ 0.21
LINC00539-201ENST00000411525 ANKRD30BQ9BXX2 1392 aa16.38■□□□□ 0.21
LINC00539-201ENST00000411525 PIK3C2BO00750 1634 aa16.37■□□□□ 0.21
LINC00539-201ENST00000411525 LTKP29376 864 aa16.37■□□□□ 0.21
LINC00539-201ENST00000411525 ALKQ9UM73 1620 aa16.37■□□□□ 0.21
LINC00539-201ENST00000411525 LMTK2Q8IWU2 1503 aa16.36■□□□□ 0.21
LINC00539-201ENST00000411525 FOXD1Q16676 465 aa16.36■□□□□ 0.21
LINC00539-201ENST00000411525 SIN3AQ96ST3 1273 aa16.36■□□□□ 0.21
LINC00539-201ENST00000411525 E9PCH4 1651 aa16.35■□□□□ 0.21
LINC00539-201ENST00000411525 TMEM2Q9UHN6 1383 aa16.35■□□□□ 0.21
LINC00539-201ENST00000411525 EFCAB6Q5THR3 1501 aa16.34■□□□□ 0.21
LINC00539-201ENST00000411525 NEUROD1Q13562 356 aa16.33■□□□□ 0.2
LINC00539-201ENST00000411525 RPRD2Q5VT52 1461 aaKnown RBP16.33■□□□□ 0.2
LINC00539-201ENST00000411525 XIRP1Q702N8 1843 aaKnown RBP16.32■□□□□ 0.2
LINC00539-201ENST00000411525 PHF23Q9BUL5 403 aaPredicted RBP16.32■□□□□ 0.2
LINC00539-201ENST00000411525 IDI1Q13907 227 aa16.31■□□□□ 0.2
LINC00539-201ENST00000411525 SPHKAPQ2M3C7 1700 aa16.31■□□□□ 0.2
LINC00539-201ENST00000411525 TONSLQ96HA7 1378 aa16.3■□□□□ 0.2
LINC00539-201ENST00000411525 SLC52A1Q9NWF4 448 aa16.3■□□□□ 0.2
LINC00539-201ENST00000411525 TIMELESSQ9UNS1 1208 aa16.3■□□□□ 0.2
LINC00539-201ENST00000411525 NOS1P29475 1434 aa16.28■□□□□ 0.2
LINC00539-201ENST00000411525 TRPM2O94759 1503 aa16.27■□□□□ 0.2
LINC00539-201ENST00000411525 ADGRB3O60242 1522 aa16.26■□□□□ 0.19
LINC00539-201ENST00000411525 KCNA6P17658 529 aa16.26■□□□□ 0.19
LINC00539-201ENST00000411525 HDGFP51858 240 aaKnown RBP16.25■□□□□ 0.19
LINC00539-201ENST00000411525 SENP3Q9H4L4 574 aaPredicted RBP16.24■□□□□ 0.19
LINC00539-201ENST00000411525 CCDC144AA2RUR9 1427 aa16.24■□□□□ 0.19
LINC00539-201ENST00000411525 FAM135BQ49AJ0 1406 aa16.24■□□□□ 0.19
LINC00539-201ENST00000411525 TMEM94Q12767 1356 aa16.23■□□□□ 0.19
LINC00539-201ENST00000411525 MYO5BQ9ULV0 1848 aa16.22■□□□□ 0.19
LINC00539-201ENST00000411525 PROSER2Q86WR7 435 aaPredicted RBP16.22■□□□□ 0.19
LINC00539-201ENST00000411525 BCANQ96GW7 911 aa16.22■□□□□ 0.19
LINC00539-201ENST00000411525 SLC26A8Q96RN1 970 aa16.22■□□□□ 0.19
LINC00539-201ENST00000411525 CLTCL1P53675 1640 aa16.21■□□□□ 0.19
LINC00539-201ENST00000411525 NKTRP30414 1462 aaKnown RBP16.21■□□□□ 0.19
LINC00539-201ENST00000411525 NWD1Q149M9 1564 aa16.2■□□□□ 0.18
LINC00539-201ENST00000411525 CHD2O14647 1828 aaKnown RBP16.19■□□□□ 0.18
LINC00539-201ENST00000411525 PPP1R15AO75807 674 aaPredicted RBP16.18■□□□□ 0.18
LINC00539-201ENST00000411525 ROBO1Q9Y6N7 1651 aa16.18■□□□□ 0.18
LINC00539-201ENST00000411525 MSH6P52701 1360 aa16.17■□□□□ 0.18
LINC00539-201ENST00000411525 PLEKHG1Q9ULL1 1385 aa16.17■□□□□ 0.18
LINC00539-201ENST00000411525 TMEM131LA2VDJ0 1609 aa16.17■□□□□ 0.18
LINC00539-201ENST00000411525 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.17■□□□□ 0.18
LINC00539-201ENST00000411525 L3MBTL2Q969R5 705 aa16.16■□□□□ 0.18
LINC00539-201ENST00000411525 ZFYVE9O95405 1425 aa16.16■□□□□ 0.18
LINC00539-201ENST00000411525 RIMS2Q9UQ26 1411 aa16.16■□□□□ 0.18
LINC00539-201ENST00000411525 KIF1BO60333 1816 aa16.13■□□□□ 0.17
LINC00539-201ENST00000411525 TBX22Q9Y458 520 aa16.13■□□□□ 0.17
LINC00539-201ENST00000411525 SPATA31E1Q6ZUB1 1445 aa16.12■□□□□ 0.17
LINC00539-201ENST00000411525 NCOA3Q9Y6Q9 1424 aa16.12■□□□□ 0.17
LINC00539-201ENST00000411525 CHGAP10645 457 aaKnown RBP16.12■□□□□ 0.17
LINC00539-201ENST00000411525 RBM33Q96EV2 1170 aaKnown RBP16.12■□□□□ 0.17
LINC00539-201ENST00000411525 SLAIN2Q9P270 581 aa16.12■□□□□ 0.17
LINC00539-201ENST00000411525 DIP2AQ14689 1571 aa16.11■□□□□ 0.17
LINC00539-201ENST00000411525 PHLPP1O60346 1717 aa16.11■□□□□ 0.17
LINC00539-201ENST00000411525 RGS17Q9UGC6 210 aaPredicted RBP16.1■□□□□ 0.17
LINC00539-201ENST00000411525 PIK3R4Q99570 1358 aa16.1■□□□□ 0.17
LINC00539-201ENST00000411525 C14orf37Q86TY3 774 aa16.07■□□□□ 0.16
LINC00539-201ENST00000411525 IFT172Q9UG01 1749 aa16.06■□□□□ 0.16
LINC00539-201ENST00000411525 ADAMTS13Q76LX8 1427 aa16.05■□□□□ 0.16
LINC00539-201ENST00000411525 JCADQ9P266 1359 aa16.05■□□□□ 0.16
LINC00539-201ENST00000411525 CADPS2Q86UW7 1296 aa16.05■□□□□ 0.16
LINC00539-201ENST00000411525 ATF3P18847 181 aa16.04■□□□□ 0.16
LINC00539-201ENST00000411525 C19orf44Q9H6X5 657 aa16.04■□□□□ 0.16
LINC00539-201ENST00000411525 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.04■□□□□ 0.16
LINC00539-201ENST00000411525 RALGAPBQ86X10 1494 aa16.03■□□□□ 0.16
LINC00539-201ENST00000411525 NBPF8Q3BBV2 869 aa16.03■□□□□ 0.16
LINC00539-201ENST00000411525 RGL3Q3MIN7 710 aa16.03■□□□□ 0.16
LINC00539-201ENST00000411525 NUTM2DQ5VT03 806 aaPredicted RBP16.03■□□□□ 0.16
LINC00539-201ENST00000411525 DCAF11Q8TEB1 546 aa16.03■□□□□ 0.16
LINC00539-201ENST00000411525 TRPM1Q7Z4N2 1603 aa16.03■□□□□ 0.16
LINC00539-201ENST00000411525 PRAG1Q86YV5 1406 aa16.02■□□□□ 0.16
LINC00539-201ENST00000411525 MYOM2P54296 1465 aa16.02■□□□□ 0.15
LINC00539-201ENST00000411525 ZNF316A6NFI3 1004 aaPredicted RBP16.01■□□□□ 0.15
LINC00539-201ENST00000411525 POTEAQ6S8J7 498 aa16.01■□□□□ 0.15
LINC00539-201ENST00000411525 COL16A1Q07092 1604 aaPredicted RBP16.01■□□□□ 0.15
LINC00539-201ENST00000411525 PPLO60437 1756 aa16■□□□□ 0.15
LINC00539-201ENST00000411525 AMOTL2Q9Y2J4 779 aa16■□□□□ 0.15
LINC00539-201ENST00000411525 SPATA31A6Q5VVP1 1343 aa15.99■□□□□ 0.15
LINC00539-201ENST00000411525 ZNF326Q5BKZ1 582 aaKnown RBP15.99■□□□□ 0.15
LINC00539-201ENST00000411525 KDM2AQ9Y2K7 1162 aa15.99■□□□□ 0.15
LINC00539-201ENST00000411525 AHDC1Q5TGY3 1603 aaPredicted RBP15.98■□□□□ 0.15
LINC00539-201ENST00000411525 SETBP1Q9Y6X0 1596 aa15.97■□□□□ 0.15
LINC00539-201ENST00000411525 DCCP43146 1447 aa15.97■□□□□ 0.15
LINC00539-201ENST00000411525 STAC3Q96MF2 364 aa15.97■□□□□ 0.15
LINC00539-201ENST00000411525 SHPRHQ149N8 1683 aa15.97■□□□□ 0.15
LINC00539-201ENST00000411525 NEXMIFQ5QGS0 1516 aa15.97■□□□□ 0.15
LINC00539-201ENST00000411525 LAMC1P11047 1609 aa15.97■□□□□ 0.15
LINC00539-201ENST00000411525 KIAA1210Q9ULL0 1709 aa15.96■□□□□ 0.15
LINC00539-201ENST00000411525 XRN1Q8IZH2 1706 aaKnown RBP15.95■□□□□ 0.14
LINC00539-201ENST00000411525 MEX3CQ5U5Q3 659 aaKnown RBP15.95■□□□□ 0.14
LINC00539-201ENST00000411525 NRXN1Q9ULB1 1477 aa15.95■□□□□ 0.14
LINC00539-201ENST00000411525 PTPRUQ92729 1446 aa15.94■□□□□ 0.14
LINC00539-201ENST00000411525 NRXN3Q9Y4C0 1643 aa15.94■□□□□ 0.14
LINC00539-201ENST00000411525 RPGRIP1LQ68CZ1 1315 aa15.94■□□□□ 0.14
LINC00539-201ENST00000411525 ZNF772Q68DY9 489 aaPredicted RBP15.93■□□□□ 0.14
LINC00539-201ENST00000411525 ROCK2O75116 1388 aaKnown RBP15.92■□□□□ 0.14
LINC00539-201ENST00000411525 BRINP3Q76B58 766 aa15.92■□□□□ 0.14
LINC00539-201ENST00000411525 GPRASP1Q5JY77 1395 aa15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms