RNA–Protein interactions for RNA: ENST00000409777.5

CUL3-204, Transcript of cullin 3, humanhuman

TSL 1 (best) BASIC

Gene CUL3, Length 3,147 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUL3-204ENST00000409777 NKX1-1Q15270 411 aaPredicted RBP4.28□□□□□ -1.72
CUL3-204ENST00000409777 NUDCQ9Y266 331 aa4.28□□□□□ -1.72
CUL3-204ENST00000409777 BRD4O60885 1362 aaPredicted RBP4.28□□□□□ -1.72
CUL3-204ENST00000409777 SYNJ2O15056 1496 aa4.28□□□□□ -1.72
CUL3-204ENST00000409777 MAGI2Q86UL8 1455 aa4.28□□□□□ -1.72
CUL3-204ENST00000409777 IQGAP3Q86VI3 1631 aa4.28□□□□□ -1.72
CUL3-204ENST00000409777 POTEIP0CG38 1075 aa4.28□□□□□ -1.72
CUL3-204ENST00000409777 P3H3Q8IVL6 736 aa4.28□□□□□ -1.72
CUL3-204ENST00000409777 GPRASP1Q5JY77 1395 aa4.28□□□□□ -1.73
CUL3-204ENST00000409777 PLEKHH2Q8IVE3 1493 aa4.27□□□□□ -1.73
CUL3-204ENST00000409777 MRC2Q9UBG0 1479 aa4.27□□□□□ -1.73
CUL3-204ENST00000409777 PLXNC1O60486 1568 aa4.27□□□□□ -1.73
CUL3-204ENST00000409777 PREX2Q70Z35 1606 aa4.27□□□□□ -1.73
CUL3-204ENST00000409777 VGFO15240 615 aaPredicted RBP4.27□□□□□ -1.73
CUL3-204ENST00000409777 NOP58Q9Y2X3 529 aaKnown RBP4.27□□□□□ -1.73
CUL3-204ENST00000409777 TDRD9Q8NDG6 1382 aaKnown RBP4.27□□□□□ -1.73
CUL3-204ENST00000409777 ATP10AO60312 1499 aa4.27□□□□□ -1.73
CUL3-204ENST00000409777 IFT140Q96RY7 1462 aa4.27□□□□□ -1.73
CUL3-204ENST00000409777 EIF2AK4Q9P2K8 1649 aaKnown RBP4.27□□□□□ -1.73
CUL3-204ENST00000409777 IQGAP1P46940 1657 aa4.27□□□□□ -1.73
CUL3-204ENST00000409777 PNISRQ8TF01 805 aaKnown RBP4.27□□□□□ -1.73
CUL3-204ENST00000409777 PARD3Q8TEW0 1356 aa4.27□□□□□ -1.73
CUL3-204ENST00000409777 NEURL4Q96JN8 1562 aa4.26□□□□□ -1.73
CUL3-204ENST00000409777 GRIN2AQ12879 1464 aa4.26□□□□□ -1.73
CUL3-204ENST00000409777 USP47Q96K76 1375 aa4.26□□□□□ -1.73
CUL3-204ENST00000409777 DEKP35659 375 aaKnown RBP4.26□□□□□ -1.73
CUL3-204ENST00000409777 CDC42BPBQ9Y5S2 1711 aa4.26□□□□□ -1.73
CUL3-204ENST00000409777 FAM212AQ96EL1 285 aa4.26□□□□□ -1.73
CUL3-204ENST00000409777 COL17A1Q9UMD9 1497 aaPredicted RBP4.26□□□□□ -1.73
CUL3-204ENST00000409777 WASHC2CQ9Y4E1 1318 aa4.26□□□□□ -1.73
CUL3-204ENST00000409777 GTPBP6O43824 516 aaPredicted RBP4.26□□□□□ -1.73
CUL3-204ENST00000409777 IPO9Q96P70 1041 aaKnown RBP4.26□□□□□ -1.73
CUL3-204ENST00000409777 ZRANB1Q9UGI0 708 aa4.26□□□□□ -1.73
CUL3-204ENST00000409777 MYOM1P52179 1685 aa4.25□□□□□ -1.73
CUL3-204ENST00000409777 KIF15Q9NS87 1388 aa4.25□□□□□ -1.73
CUL3-204ENST00000409777 MAMSTRQ6ZN01 415 aa4.25□□□□□ -1.73
CUL3-204ENST00000409777 DCBLD2Q96PD2 775 aa4.25□□□□□ -1.73
CUL3-204ENST00000409777 MRS2Q9HD23 443 aa4.25□□□□□ -1.73
CUL3-204ENST00000409777 ABCC2Q92887 1545 aa4.25□□□□□ -1.73
CUL3-204ENST00000409777 MAGI1Q96QZ7 1491 aaPredicted RBP4.25□□□□□ -1.73
CUL3-204ENST00000409777 NUP160Q12769 1436 aa4.25□□□□□ -1.73
CUL3-204ENST00000409777 KIAA1210Q9ULL0 1709 aa4.25□□□□□ -1.73
CUL3-204ENST00000409777 MS4A1P11836 297 aa4.25□□□□□ -1.73
CUL3-204ENST00000409777 DCAF8Q5TAQ9 597 aa4.25□□□□□ -1.73
CUL3-204ENST00000409777 ASTLQ6HA08 431 aaPredicted RBP4.25□□□□□ -1.73
CUL3-204ENST00000409777 RRP7BPQ9NSQ0 103 aa4.25□□□□□ -1.73
CUL3-204ENST00000409777 SAMD9LQ8IVG5 1584 aa4.24□□□□□ -1.73
CUL3-204ENST00000409777 IRX6P78412 446 aaPredicted RBP4.24□□□□□ -1.73
CUL3-204ENST00000409777 B4GALNT3Q6L9W6 998 aa4.24□□□□□ -1.73
CUL3-204ENST00000409777 PRAG1Q86YV5 1406 aa4.24□□□□□ -1.73
CUL3-204ENST00000409777 CCDC141Q6ZP82 1450 aa4.24□□□□□ -1.73
CUL3-204ENST00000409777 SPHKAPQ2M3C7 1700 aa4.24□□□□□ -1.73
CUL3-204ENST00000409777 FAM135AQ9P2D6 1515 aa4.24□□□□□ -1.73
CUL3-204ENST00000409777 RASEFQ8IZ41 740 aa4.24□□□□□ -1.73
CUL3-204ENST00000409777 SLC39A7Q92504 469 aa4.24□□□□□ -1.73
CUL3-204ENST00000409777 USP35Q9P2H5 1018 aa4.24□□□□□ -1.73
CUL3-204ENST00000409777 MADDQ8WXG6 1647 aa4.23□□□□□ -1.73
CUL3-204ENST00000409777 SYNMO15061 1565 aa4.23□□□□□ -1.73
CUL3-204ENST00000409777 C7P10643 843 aa4.23□□□□□ -1.73
CUL3-204ENST00000409777 PDE3BQ13370 1112 aa4.23□□□□□ -1.73
CUL3-204ENST00000409777 ANKRD50Q9ULJ7 1429 aa4.23□□□□□ -1.73
CUL3-204ENST00000409777 DEPDC5O75140 1603 aa4.23□□□□□ -1.73
CUL3-204ENST00000409777 MYBBP1AQ9BQG0 1328 aaKnown RBP4.23□□□□□ -1.73
CUL3-204ENST00000409777 CEP152O94986 1710 aa4.23□□□□□ -1.73
CUL3-204ENST00000409777 PRG4Q92954 1404 aaPredicted RBP4.23□□□□□ -1.73
CUL3-204ENST00000409777 TCERG1O14776 1098 aaKnown RBP4.23□□□□□ -1.73
CUL3-204ENST00000409777 RALBP1Q15311 655 aa4.23□□□□□ -1.73
CUL3-204ENST00000409777 RYDENQ9NUL5 291 aaKnown RBP4.23□□□□□ -1.73
CUL3-204ENST00000409777 PLA2R1Q13018 1463 aa4.23□□□□□ -1.73
CUL3-204ENST00000409777 DUOX2Q9NRD8 1548 aa4.22□□□□□ -1.73
CUL3-204ENST00000409777 LMOD2Q6P5Q4 547 aa4.22□□□□□ -1.73
CUL3-204ENST00000409777 ARID3AQ99856 593 aa4.22□□□□□ -1.73
CUL3-204ENST00000409777 SHROOM2Q13796 1616 aa4.22□□□□□ -1.73
CUL3-204ENST00000409777 ANKRD30AQ9BXX3 1397 aa4.22□□□□□ -1.73
CUL3-204ENST00000409777 C9orf84Q5VXU9 1444 aa4.22□□□□□ -1.73
CUL3-204ENST00000409777 MYO3AQ8NEV4 1616 aa4.22□□□□□ -1.73
CUL3-204ENST00000409777 RRP1P56182 461 aaKnown RBP4.22□□□□□ -1.73
CUL3-204ENST00000409777 IFT172Q9UG01 1749 aa4.22□□□□□ -1.73
CUL3-204ENST00000409777 PER1O15534 1290 aaPredicted RBP4.21□□□□□ -1.73
CUL3-204ENST00000409777 BACH2Q9BYV9 841 aa4.21□□□□□ -1.73
CUL3-204ENST00000409777 A2MP01023 1474 aa4.21□□□□□ -1.73
CUL3-204ENST00000409777 KDM2BQ8NHM5 1336 aa4.21□□□□□ -1.74
CUL3-204ENST00000409777 NEUROD2Q15784 382 aa4.21□□□□□ -1.74
CUL3-204ENST00000409777 FAM9BQ8IZU0 186 aa4.21□□□□□ -1.74
CUL3-204ENST00000409777 CCDC144AA2RUR9 1427 aa4.21□□□□□ -1.74
CUL3-204ENST00000409777 PLB1Q6P1J6 1458 aa4.21□□□□□ -1.74
CUL3-204ENST00000409777 ZNF644Q9H582 1327 aaPredicted RBP4.2□□□□□ -1.74
CUL3-204ENST00000409777 WDR7Q9Y4E6 1490 aa4.2□□□□□ -1.74
CUL3-204ENST00000409777 DHX30Q7L2E3 1194 aaKnown RBP eCLIP4.2□□□□□ -1.74
CUL3-204ENST00000409777 C1orf115Q9H7X2 142 aa4.2□□□□□ -1.74
CUL3-204ENST00000409777 CHIC2Q9UKJ5 165 aa4.2□□□□□ -1.74
CUL3-204ENST00000409777 ZC3H13Q5T200 1668 aaKnown RBP4.2□□□□□ -1.74
CUL3-204ENST00000409777 VWDEQ8N2E2 1590 aa4.2□□□□□ -1.74
CUL3-204ENST00000409777 ATP10BO94823 1461 aa4.2□□□□□ -1.74
CUL3-204ENST00000409777 USP32Q8NFA0 1604 aa4.2□□□□□ -1.74
CUL3-204ENST00000409777 ATP1B4Q9UN42 357 aaPredicted RBP4.2□□□□□ -1.74
CUL3-204ENST00000409777 SPATA31D1Q6ZQQ2 1576 aa4.2□□□□□ -1.74
CUL3-204ENST00000409777 ZNF521Q96K83 1311 aa4.2□□□□□ -1.74
CUL3-204ENST00000409777 NPC1L1Q9UHC9 1359 aa4.2□□□□□ -1.74
CUL3-204ENST00000409777 SCAPERQ9BY12 1400 aa4.19□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms