RNA–Protein interactions for RNA: ENST00000409694.6

SYNE1-210, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,634 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-210ENST00000409694 LUC7LQ9NQ29 371 aaKnown RBP9.54□□□□□ -0.88
SYNE1-210ENST00000409694 TAF3Q5VWG9 929 aa9.54□□□□□ -0.88
SYNE1-210ENST00000409694 BAZ1AQ9NRL2 1556 aaPredicted RBP9.53□□□□□ -0.88
SYNE1-210ENST00000409694 IFT57Q9NWB7 429 aa9.53□□□□□ -0.88
SYNE1-210ENST00000409694 UACAQ9BZF9 1416 aa9.53□□□□□ -0.88
SYNE1-210ENST00000409694 SEPT7Q16181 437 aaKnown RBP9.53□□□□□ -0.88
SYNE1-210ENST00000409694 SETD5Q9C0A6 1442 aa9.53□□□□□ -0.88
SYNE1-210ENST00000409694 XBP1P17861 261 aa9.53□□□□□ -0.88
SYNE1-210ENST00000409694 PIP4K2AP48426 406 aaPredicted RBP9.53□□□□□ -0.88
SYNE1-210ENST00000409694 IQCEQ6IPM2 695 aa9.53□□□□□ -0.88
SYNE1-210ENST00000409694 FAM161AQ3B820 660 aa9.53□□□□□ -0.88
SYNE1-210ENST00000409694 DYDC1Q8WWB3 177 aa9.53□□□□□ -0.88
SYNE1-210ENST00000409694 OFD1O75665 1012 aa9.53□□□□□ -0.88
SYNE1-210ENST00000409694 FAM43AQ8N2R8 423 aa9.52□□□□□ -0.88
SYNE1-210ENST00000409694 BICD2Q8TD16 824 aa9.52□□□□□ -0.88
SYNE1-210ENST00000409694 BAZ1BQ9UIG0 1483 aaKnown RBP9.52□□□□□ -0.89
SYNE1-210ENST00000409694 CCDC73Q6ZRK6 1079 aa9.52□□□□□ -0.89
SYNE1-210ENST00000409694 TNIKQ9UKE5 1360 aa9.52□□□□□ -0.89
SYNE1-210ENST00000409694 SENP3-EIF4A1A0A087X0R7 540 aa9.52□□□□□ -0.89
SYNE1-210ENST00000409694 CHMP5Q9NZZ3 219 aa9.52□□□□□ -0.89
SYNE1-210ENST00000409694 FAM13BQ9NYF5 915 aa9.52□□□□□ -0.89
SYNE1-210ENST00000409694 GBP2P32456 591 aaPredicted RBP9.52□□□□□ -0.89
SYNE1-210ENST00000409694 SLC4A10Q6U841 1118 aa9.52□□□□□ -0.89
SYNE1-210ENST00000409694 SYCP1Q15431 976 aa9.51□□□□□ -0.89
SYNE1-210ENST00000409694 WASHC2AQ641Q2 1341 aa9.51□□□□□ -0.89
SYNE1-210ENST00000409694 KIF15Q9NS87 1388 aa9.51□□□□□ -0.89
SYNE1-210ENST00000409694 ZFYVE27Q5T4F4 411 aa9.51□□□□□ -0.89
SYNE1-210ENST00000409694 NUCB2P80303 420 aa9.51□□□□□ -0.89
SYNE1-210ENST00000409694 FEZ1Q99689 392 aa9.51□□□□□ -0.89
SYNE1-210ENST00000409694 NINLQ9Y2I6 1382 aa9.51□□□□□ -0.89
SYNE1-210ENST00000409694 RILPL2Q969X0 211 aa9.5□□□□□ -0.89
SYNE1-210ENST00000409694 NEFHP12036 1026 aa9.5□□□□□ -0.89
SYNE1-210ENST00000409694 DESP17661 470 aa9.5□□□□□ -0.89
SYNE1-210ENST00000409694 CAVIN1Q6NZI2 390 aaKnown RBP9.5□□□□□ -0.89
SYNE1-210ENST00000409694 VPS37DQ86XT2 251 aa9.5□□□□□ -0.89
SYNE1-210ENST00000409694 FOXD4L1Q9NU39 408 aa9.5□□□□□ -0.89
SYNE1-210ENST00000409694 TSPYL1Q9H0U9 437 aa9.5□□□□□ -0.89
SYNE1-210ENST00000409694 ANO2Q9NQ90 1003 aa9.5□□□□□ -0.89
SYNE1-210ENST00000409694 ENOX2Q16206 610 aaKnown RBP9.49□□□□□ -0.89
SYNE1-210ENST00000409694 NFXL1Q6ZNB6 911 aa9.49□□□□□ -0.89
SYNE1-210ENST00000409694 WRNQ14191 1432 aaPredicted RBP eCLIP9.49□□□□□ -0.89
SYNE1-210ENST00000409694 HMGN5P82970 282 aaKnown RBP9.49□□□□□ -0.89
SYNE1-210ENST00000409694 EIF3JO75822 258 aaKnown RBP9.49□□□□□ -0.89
SYNE1-210ENST00000409694 DHX16O60231 1041 aaKnown RBP9.49□□□□□ -0.89
SYNE1-210ENST00000409694 HSP90AB3PQ58FF7 597 aa9.48□□□□□ -0.89
SYNE1-210ENST00000409694 MAGEC2Q9UBF1 373 aaPredicted RBP9.48□□□□□ -0.89
SYNE1-210ENST00000409694 FOXD4L5Q5VV16 416 aaPredicted RBP9.48□□□□□ -0.89
SYNE1-210ENST00000409694 FOXD4L4Q8WXT5 416 aaPredicted RBP9.48□□□□□ -0.89
SYNE1-210ENST00000409694 C1orf141Q5JVX7 400 aa9.48□□□□□ -0.89
SYNE1-210ENST00000409694 CCDC9Q9Y3X0 531 aaKnown RBP9.48□□□□□ -0.89
SYNE1-210ENST00000409694 PLCD4Q9BRC7 762 aa9.48□□□□□ -0.89
SYNE1-210ENST00000409694 CT47B1P0C2W7 299 aaPredicted RBP9.48□□□□□ -0.89
SYNE1-210ENST00000409694 FILIP1LQ4L180 1135 aa9.48□□□□□ -0.89
SYNE1-210ENST00000409694 TRIM21P19474 475 aaKnown RBP9.47□□□□□ -0.89
SYNE1-210ENST00000409694 TXLNAP40222 546 aa9.47□□□□□ -0.89
SYNE1-210ENST00000409694 SEPT11Q9NVA2 429 aaKnown RBP9.47□□□□□ -0.89
SYNE1-210ENST00000409694 AAMPQ13685 434 aa9.47□□□□□ -0.89
SYNE1-210ENST00000409694 CLASRPQ8N2M8 674 aaKnown RBP9.47□□□□□ -0.89
SYNE1-210ENST00000409694 AXDND1Q5T1B0 1012 aaPredicted RBP9.47□□□□□ -0.89
SYNE1-210ENST00000409694 KIF3BO15066 747 aa9.47□□□□□ -0.89
SYNE1-210ENST00000409694 SLC26A8Q96RN1 970 aa9.47□□□□□ -0.89
SYNE1-210ENST00000409694 ZSCAN21Q9Y5A6 473 aaPredicted RBP9.47□□□□□ -0.89
SYNE1-210ENST00000409694 ERLIN1O75477 346 aa9.47□□□□□ -0.89
SYNE1-210ENST00000409694 AMPHP49418 695 aa9.47□□□□□ -0.89
SYNE1-210ENST00000409694 PAF1Q8N7H5 531 aa9.47□□□□□ -0.89
SYNE1-210ENST00000409694 RAD21O60216 631 aa9.46□□□□□ -0.89
SYNE1-210ENST00000409694 EID1Q9Y6B2 187 aa9.46□□□□□ -0.89
SYNE1-210ENST00000409694 ERC2O15083 957 aa9.46□□□□□ -0.89
SYNE1-210ENST00000409694 ZNHIT6Q9NWK9 470 aaKnown RBP9.46□□□□□ -0.9
SYNE1-210ENST00000409694 CCDC91Q7Z6B0 441 aa9.46□□□□□ -0.9
SYNE1-210ENST00000409694 INTS3Q68E01 1043 aaKnown RBP9.46□□□□□ -0.9
SYNE1-210ENST00000409694 SMC3Q9UQE7 1217 aa9.46□□□□□ -0.9
SYNE1-210ENST00000409694 IFIT2P09913 472 aaKnown RBP9.45□□□□□ -0.9
SYNE1-210ENST00000409694 DNAI2Q9GZS0 605 aa9.45□□□□□ -0.9
SYNE1-210ENST00000409694 PSMA5P28066 241 aa9.45□□□□□ -0.9
SYNE1-210ENST00000409694 NLRP13Q86W25 1043 aa9.45□□□□□ -0.9
SYNE1-210ENST00000409694 PPM1EQ8WY54 764 aa9.45□□□□□ -0.9
SYNE1-210ENST00000409694 CARMIL2Q6F5E8 1435 aa9.45□□□□□ -0.9
SYNE1-210ENST00000409694 DDX58O95786 925 aaKnown RBP9.45□□□□□ -0.9
SYNE1-210ENST00000409694 HSP90AB4PQ58FF6 505 aa9.45□□□□□ -0.9
SYNE1-210ENST00000409694 TTC5Q8N0Z6 440 aa9.45□□□□□ -0.9
SYNE1-210ENST00000409694 NGEFQ8N5V2 710 aa9.45□□□□□ -0.9
SYNE1-210ENST00000409694 ANKRD30AQ9BXX3 1397 aa9.45□□□□□ -0.9
SYNE1-210ENST00000409694 STAMBPO95630 424 aa9.45□□□□□ -0.9
SYNE1-210ENST00000409694 ANKRD45Q5TZF3 282 aa9.45□□□□□ -0.9
SYNE1-210ENST00000409694 DEF6Q9H4E7 631 aa9.45□□□□□ -0.9
SYNE1-210ENST00000409694 C9orf78Q9NZ63 289 aaPredicted RBP9.44□□□□□ -0.9
SYNE1-210ENST00000409694 DDX19BQ9UMR2 479 aa9.44□□□□□ -0.9
SYNE1-210ENST00000409694 SAFB2Q14151 953 aaKnown RBP eCLIP9.44□□□□□ -0.9
SYNE1-210ENST00000409694 SART3Q15020 963 aaKnown RBP9.44□□□□□ -0.9
SYNE1-210ENST00000409694 CDK5RAP3Q96JB5 506 aa9.44□□□□□ -0.9
SYNE1-210ENST00000409694 E9PSI1 815 aa9.44□□□□□ -0.9
SYNE1-210ENST00000409694 ZKSCAN2Q63HK3 967 aa9.44□□□□□ -0.9
SYNE1-210ENST00000409694 PDILTQ8N807 584 aa9.44□□□□□ -0.9
SYNE1-210ENST00000409694 DACH1Q9UI36 760 aa9.44□□□□□ -0.9
SYNE1-210ENST00000409694 CCAR1Q8IX12 1150 aaKnown RBP9.44□□□□□ -0.9
SYNE1-210ENST00000409694 RALYLQ86SE5 291 aaKnown RBP9.44□□□□□ -0.9
SYNE1-210ENST00000409694 HSPA5P11021 654 aaKnown RBP9.44□□□□□ -0.9
SYNE1-210ENST00000409694 SPATA24Q86W54 205 aa9.44□□□□□ -0.9
SYNE1-210ENST00000409694 NF2P35240 595 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms