RNA–Protein interactions for RNA: ENST00000409470.5

USP39-203, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,034 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-203ENST00000409470 FAM9BQ8IZU0 186 aa28.31■■■□□ 2.12
USP39-203ENST00000409470 NOS1P29475 1434 aa28.3■■■□□ 2.12
USP39-203ENST00000409470 CFAP70Q5T0N1 1121 aa28.3■■■□□ 2.12
USP39-203ENST00000409470 ARHGAP31Q2M1Z3 1444 aa28.29■■■□□ 2.12
USP39-203ENST00000409470 SIGLEC1Q9BZZ2 1709 aa28.29■■■□□ 2.12
USP39-203ENST00000409470 EIF3AQ14152 1382 aaKnown RBP28.28■■■□□ 2.12
USP39-203ENST00000409470 NRXN1Q9ULB1 1477 aa28.26■■■□□ 2.11
USP39-203ENST00000409470 KIF13AQ9H1H9 1805 aa28.24■■■□□ 2.11
USP39-203ENST00000409470 SYNMO15061 1565 aa28.24■■■□□ 2.11
USP39-203ENST00000409470 KTN1Q86UP2 1357 aaKnown RBP28.23■■■□□ 2.11
USP39-203ENST00000409470 RPGRIP1LQ68CZ1 1315 aa28.23■■■□□ 2.11
USP39-203ENST00000409470 PPLO60437 1756 aa28.22■■■□□ 2.11
USP39-203ENST00000409470 RALBP1Q15311 655 aa28.22■■■□□ 2.11
USP39-203ENST00000409470 PIK3C2BO00750 1634 aa28.22■■■□□ 2.11
USP39-203ENST00000409470 CDCA8Q53HL2 280 aa28.2■■■□□ 2.11
USP39-203ENST00000409470 REREQ9P2R6 1566 aa28.19■■■□□ 2.1
USP39-203ENST00000409470 PANK3Q9H999 370 aa28.18■■■□□ 2.1
USP39-203ENST00000409470 PER1O15534 1290 aaPredicted RBP28.18■■■□□ 2.1
USP39-203ENST00000409470 MYBBP1AQ9BQG0 1328 aaKnown RBP28.17■■■□□ 2.1
USP39-203ENST00000409470 TMC1Q8TDI8 760 aa28.16■■■□□ 2.1
USP39-203ENST00000409470 SLC52A1Q9NWF4 448 aa28.16■■■□□ 2.1
USP39-203ENST00000409470 PIK3C2GO75747 1445 aa28.16■■■□□ 2.1
USP39-203ENST00000409470 AGLP35573 1532 aa28.15■■■□□ 2.1
USP39-203ENST00000409470 IDI1Q13907 227 aa28.15■■■□□ 2.1
USP39-203ENST00000409470 SUPT16HQ9Y5B9 1047 aaKnown RBP28.14■■■□□ 2.1
USP39-203ENST00000409470 PREX1Q8TCU6 1659 aa28.14■■■□□ 2.09
USP39-203ENST00000409470 SETBP1Q9Y6X0 1596 aa28.13■■■□□ 2.09
USP39-203ENST00000409470 SLC24A1O60721 1099 aa28.13■■■□□ 2.09
USP39-203ENST00000409470 C14orf93Q9H972 538 aaKnown RBP28.13■■■□□ 2.09
USP39-203ENST00000409470 PPP6R1Q9UPN7 881 aa28.11■■■□□ 2.09
USP39-203ENST00000409470 VGFO15240 615 aaPredicted RBP28.11■■■□□ 2.09
USP39-203ENST00000409470 BRD4O60885 1362 aaPredicted RBP28.11■■■□□ 2.09
USP39-203ENST00000409470 PARD3Q8TEW0 1356 aa28.1■■■□□ 2.09
USP39-203ENST00000409470 NEXMIFQ5QGS0 1516 aa28.08■■■□□ 2.09
USP39-203ENST00000409470 NUTM2DQ5VT03 806 aaPredicted RBP28.08■■■□□ 2.09
USP39-203ENST00000409470 CC2D1BQ5T0F9 858 aaKnown RBP28.08■■■□□ 2.08
USP39-203ENST00000409470 ZBED9Q6R2W3 1325 aa28.07■■■□□ 2.08
USP39-203ENST00000409470 FBXO31Q5XUX0 539 aaPredicted RBP28.07■■■□□ 2.08
USP39-203ENST00000409470 PNISRQ8TF01 805 aaKnown RBP28.07■■■□□ 2.08
USP39-203ENST00000409470 ARHGEF40Q8TER5 1519 aa28.07■■■□□ 2.08
USP39-203ENST00000409470 MLECQ14165 292 aa28.05■■■□□ 2.08
USP39-203ENST00000409470 KDM5AP29375 1690 aaKnown RBP28.05■■■□□ 2.08
USP39-203ENST00000409470 NLRP13Q86W25 1043 aa28.04■■■□□ 2.08
USP39-203ENST00000409470 MYO3AQ8NEV4 1616 aa28.04■■■□□ 2.08
USP39-203ENST00000409470 ERVK-7P63135 1459 aa28.04■■■□□ 2.08
USP39-203ENST00000409470 NEFLP07196 543 aa28.04■■■□□ 2.08
USP39-203ENST00000409470 TRAK1Q9UPV9 953 aa28.04■■■□□ 2.08
USP39-203ENST00000409470 CLTCQ00610 1675 aaKnown RBP28.03■■■□□ 2.08
USP39-203ENST00000409470 TMEM132EQ6IEE7 984 aa28.03■■■□□ 2.08
USP39-203ENST00000409470 ADGRB1O14514 1584 aa28.03■■■□□ 2.08
USP39-203ENST00000409470 CENPJQ9HC77 1338 aaPredicted RBP28.03■■■□□ 2.08
USP39-203ENST00000409470 KNSTRNQ9Y448 316 aa28.02■■■□□ 2.08
USP39-203ENST00000409470 TMEM131LA2VDJ0 1609 aa28.01■■■□□ 2.07
USP39-203ENST00000409470 FKBP8Q14318 412 aa28.01■■■□□ 2.07
USP39-203ENST00000409470 SBNO2Q9Y2G9 1366 aa28■■■□□ 2.07
USP39-203ENST00000409470 MYO5BQ9ULV0 1848 aa28■■■□□ 2.07
USP39-203ENST00000409470 MYOM1P52179 1685 aa27.98■■■□□ 2.07
USP39-203ENST00000409470 ZFYVE9O95405 1425 aa27.98■■■□□ 2.07
USP39-203ENST00000409470 STAG3Q9UJ98 1225 aa27.97■■■□□ 2.07
USP39-203ENST00000409470 LRPPRCP42704 1394 aaKnown RBP27.95■■■□□ 2.06
USP39-203ENST00000409470 ESF1Q9H501 851 aaKnown RBP27.94■■■□□ 2.06
USP39-203ENST00000409470 QRICH2Q9H0J4 1663 aa27.93■■■□□ 2.06
USP39-203ENST00000409470 AMER1Q5JTC6 1135 aaPredicted RBP27.91■■■□□ 2.06
USP39-203ENST00000409470 SPATA31D1Q6ZQQ2 1576 aa27.9■■■□□ 2.06
USP39-203ENST00000409470 ASXL1Q8IXJ9 1541 aa27.9■■■□□ 2.06
USP39-203ENST00000409470 SENP3Q9H4L4 574 aaPredicted RBP27.89■■■□□ 2.06
USP39-203ENST00000409470 BCANQ96GW7 911 aa27.85■■■□□ 2.05
USP39-203ENST00000409470 ARHGEF28Q8N1W1 1705 aaKnown RBP27.85■■■□□ 2.05
USP39-203ENST00000409470 NPC1L1Q9UHC9 1359 aa27.84■■■□□ 2.05
USP39-203ENST00000409470 ZMYM3Q14202 1370 aa27.83■■■□□ 2.05
USP39-203ENST00000409470 STK26Q9P289 416 aa27.82■■■□□ 2.04
USP39-203ENST00000409470 SENP3-EIF4A1A0A087X0R7 540 aa27.81■■■□□ 2.04
USP39-203ENST00000409470 PPP2R1AP30153 589 aa27.81■■■□□ 2.04
USP39-203ENST00000409470 A2ML1A8K2U0 1454 aa27.81■■■□□ 2.04
USP39-203ENST00000409470 EVC2Q86UK5 1308 aa27.79■■■□□ 2.04
USP39-203ENST00000409470 CARD14Q9BXL6 1004 aa27.79■■■□□ 2.04
USP39-203ENST00000409470 SMG6Q86US8 1419 aaKnown RBP27.77■■■□□ 2.04
USP39-203ENST00000409470 RIMS2Q9UQ26 1411 aa27.76■■■□□ 2.03
USP39-203ENST00000409470 SAFB2Q14151 953 aaKnown RBP eCLIP27.75■■■□□ 2.03
USP39-203ENST00000409470 ALKQ9UM73 1620 aa27.75■■■□□ 2.03
USP39-203ENST00000409470 PELP1Q8IZL8 1130 aaKnown RBP27.75■■■□□ 2.03
USP39-203ENST00000409470 SLC12A5Q9H2X9 1139 aa27.74■■■□□ 2.03
USP39-203ENST00000409470 YTHDC2Q9H6S0 1430 aaKnown RBP27.74■■■□□ 2.03
USP39-203ENST00000409470 PUS7Q96PZ0 661 aaKnown RBP27.74■■■□□ 2.03
USP39-203ENST00000409470 NUDCQ9Y266 331 aa27.74■■■□□ 2.03
USP39-203ENST00000409470 TULP4Q9NRJ4 1543 aa27.73■■■□□ 2.03
USP39-203ENST00000409470 INSRP06213 1382 aa27.71■■■□□ 2.03
USP39-203ENST00000409470 POGKQ9P215 609 aa27.7■■■□□ 2.03
USP39-203ENST00000409470 IRX6P78412 446 aaPredicted RBP27.7■■■□□ 2.02
USP39-203ENST00000409470 PTPRMP28827 1452 aa27.7■■■□□ 2.02
USP39-203ENST00000409470 NSD3Q9BZ95 1437 aa27.69■■■□□ 2.02
USP39-203ENST00000409470 TNRQ92752 1358 aa27.69■■■□□ 2.02
USP39-203ENST00000409470 PRAM1Q96QH2 718 aa27.69■■■□□ 2.02
USP39-203ENST00000409470 TRHP20396 242 aaPredicted RBP27.68■■■□□ 2.02
USP39-203ENST00000409470 CABP2Q9NPB3 220 aa27.68■■■□□ 2.02
USP39-203ENST00000409470 BLMP54132 1417 aaPredicted RBP27.68■■■□□ 2.02
USP39-203ENST00000409470 WDR43Q15061 677 aaKnown RBP eCLIP27.67■■■□□ 2.02
USP39-203ENST00000409470 ABCF1Q8NE71 845 aaKnown RBP eCLIP27.67■■■□□ 2.02
USP39-203ENST00000409470 SALL2Q9Y467 1007 aaPredicted RBP27.67■■■□□ 2.02
USP39-203ENST00000409470 SRPK2P78362 688 aaKnown RBP27.64■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms