RNA–Protein interactions for RNA: ENST00000409225.2

CHMP3-203, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2 BASIC

Gene CHMP3, Length 1,099 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-203ENST00000409225 NOS1P29475 1434 aa26.25■■□□□ 1.79
CHMP3-203ENST00000409225 LOC105371045A0A1W2PR82 267 aa26.23■■□□□ 1.79
CHMP3-203ENST00000409225 ANKRD30AQ9BXX3 1397 aa26.22■■□□□ 1.79
CHMP3-203ENST00000409225 SLC52A1Q9NWF4 448 aa26.2■■□□□ 1.78
CHMP3-203ENST00000409225 FGD6Q6ZV73 1430 aa26.17■■□□□ 1.78
CHMP3-203ENST00000409225 PPP1R15AO75807 674 aaPredicted RBP26.17■■□□□ 1.78
CHMP3-203ENST00000409225 COL16A1Q07092 1604 aaPredicted RBP26.17■■□□□ 1.78
CHMP3-203ENST00000409225 PLEKHG1Q9ULL1 1385 aa26.16■■□□□ 1.78
CHMP3-203ENST00000409225 ZFYVE9O95405 1425 aa26.15■■□□□ 1.78
CHMP3-203ENST00000409225 MEX3CQ5U5Q3 659 aaKnown RBP26.15■■□□□ 1.78
CHMP3-203ENST00000409225 CHD2O14647 1828 aaKnown RBP26.15■■□□□ 1.78
CHMP3-203ENST00000409225 LRP6O75581 1613 aa26.14■■□□□ 1.78
CHMP3-203ENST00000409225 RIMS2Q9UQ26 1411 aa26.14■■□□□ 1.77
CHMP3-203ENST00000409225 C14orf37Q86TY3 774 aa26.13■■□□□ 1.77
CHMP3-203ENST00000409225 MYO5BQ9ULV0 1848 aa26.12■■□□□ 1.77
CHMP3-203ENST00000409225 APLP2Q06481 763 aa26.12■■□□□ 1.77
CHMP3-203ENST00000409225 TRIM52Q96A61 297 aa26.11■■□□□ 1.77
CHMP3-203ENST00000409225 SPATA31A6Q5VVP1 1343 aa26.11■■□□□ 1.77
CHMP3-203ENST00000409225 GCC2Q8IWJ2 1684 aa26.09■■□□□ 1.77
CHMP3-203ENST00000409225 HDGFP51858 240 aaKnown RBP26.09■■□□□ 1.77
CHMP3-203ENST00000409225 ZNF772Q68DY9 489 aaPredicted RBP26.09■■□□□ 1.77
CHMP3-203ENST00000409225 UPF1Q92900 1129 aaKnown RBP eCLIP26.09■■□□□ 1.77
CHMP3-203ENST00000409225 RPRD2Q5VT52 1461 aaKnown RBP26.09■■□□□ 1.77
CHMP3-203ENST00000409225 TBX22Q9Y458 520 aa26.07■■□□□ 1.76
CHMP3-203ENST00000409225 NCOA3Q9Y6Q9 1424 aa26.06■■□□□ 1.76
CHMP3-203ENST00000409225 CHGAP10645 457 aaKnown RBP26.05■■□□□ 1.76
CHMP3-203ENST00000409225 TMEM131LA2VDJ0 1609 aa26.05■■□□□ 1.76
CHMP3-203ENST00000409225 ADGRL2O95490 1459 aa26.04■■□□□ 1.76
CHMP3-203ENST00000409225 NUTM2DQ5VT03 806 aaPredicted RBP26.04■■□□□ 1.76
CHMP3-203ENST00000409225 AHDC1Q5TGY3 1603 aaPredicted RBP26.03■■□□□ 1.76
CHMP3-203ENST00000409225 ATF3P18847 181 aa26.03■■□□□ 1.76
CHMP3-203ENST00000409225 CADPS2Q86UW7 1296 aa26.03■■□□□ 1.76
CHMP3-203ENST00000409225 SIPA1L2Q9P2F8 1722 aaPredicted RBP26.02■■□□□ 1.76
CHMP3-203ENST00000409225 ABCF1Q8NE71 845 aaKnown RBP eCLIP26.02■■□□□ 1.76
CHMP3-203ENST00000409225 C19orf44Q9H6X5 657 aa26.02■■□□□ 1.76
CHMP3-203ENST00000409225 ANKRD50Q9ULJ7 1429 aa26.02■■□□□ 1.76
CHMP3-203ENST00000409225 SHPRHQ149N8 1683 aa26.02■■□□□ 1.76
CHMP3-203ENST00000409225 ADAMTS13Q76LX8 1427 aa26.01■■□□□ 1.75
CHMP3-203ENST00000409225 NUTM2BA6NNL0 878 aaPredicted RBP25.99■■□□□ 1.75
CHMP3-203ENST00000409225 NUTM2EB1AL46 878 aaPredicted RBP25.99■■□□□ 1.75
CHMP3-203ENST00000409225 RXRBP28702 533 aa25.99■■□□□ 1.75
CHMP3-203ENST00000409225 FAM50AQ14320 339 aaKnown RBP25.99■■□□□ 1.75
CHMP3-203ENST00000409225 NUTM2AQ8IVF1 878 aaPredicted RBP25.99■■□□□ 1.75
CHMP3-203ENST00000409225 DIP2AQ14689 1571 aa25.97■■□□□ 1.75
CHMP3-203ENST00000409225 BRINP3Q76B58 766 aa25.95■■□□□ 1.74
CHMP3-203ENST00000409225 PIK3R4Q99570 1358 aa25.95■■□□□ 1.74
CHMP3-203ENST00000409225 AMOTL2Q9Y2J4 779 aa25.93■■□□□ 1.74
CHMP3-203ENST00000409225 PTPRUQ92729 1446 aa25.91■■□□□ 1.74
CHMP3-203ENST00000409225 TRPM2O94759 1503 aa25.91■■□□□ 1.74
CHMP3-203ENST00000409225 AFF2P51816 1311 aa25.9■■□□□ 1.74
CHMP3-203ENST00000409225 E9PCH4 1651 aa25.9■■□□□ 1.74
CHMP3-203ENST00000409225 CDK12Q9NYV4 1490 aaPredicted RBP25.89■■□□□ 1.73
CHMP3-203ENST00000409225 UNC13BO14795 1591 aa25.89■■□□□ 1.73
CHMP3-203ENST00000409225 ASXL1Q8IXJ9 1541 aa25.87■■□□□ 1.73
CHMP3-203ENST00000409225 DCCP43146 1447 aa25.85■■□□□ 1.73
CHMP3-203ENST00000409225 SETD5Q9C0A6 1442 aa25.84■■□□□ 1.73
CHMP3-203ENST00000409225 MST1RQ04912 1400 aa25.82■■□□□ 1.72
CHMP3-203ENST00000409225 C8orf37Q96NL8 207 aa25.82■■□□□ 1.72
CHMP3-203ENST00000409225 LRRC59Q96AG4 307 aaKnown RBP25.8■■□□□ 1.72
CHMP3-203ENST00000409225 NHSL1Q5SYE7 1610 aa25.8■■□□□ 1.72
CHMP3-203ENST00000409225 XRN1Q8IZH2 1706 aaKnown RBP25.8■■□□□ 1.72
CHMP3-203ENST00000409225 RGS12O14924 1447 aa25.8■■□□□ 1.72
CHMP3-203ENST00000409225 IQGAP3Q86VI3 1631 aa25.79■■□□□ 1.72
CHMP3-203ENST00000409225 DDX17Q92841 729 aaKnown RBP25.79■■□□□ 1.72
CHMP3-203ENST00000409225 QTRT2Q9H974 415 aaKnown RBP25.79■■□□□ 1.72
CHMP3-203ENST00000409225 NRXN3Q9Y4C0 1643 aa25.77■■□□□ 1.72
CHMP3-203ENST00000409225 RBM6P78332 1123 aaKnown RBP25.76■■□□□ 1.71
CHMP3-203ENST00000409225 PNPLA6Q8IY17 1366 aa25.76■■□□□ 1.71
CHMP3-203ENST00000409225 NUP155O75694 1391 aa25.75■■□□□ 1.71
CHMP3-203ENST00000409225 SETBP1Q9Y6X0 1596 aa25.74■■□□□ 1.71
CHMP3-203ENST00000409225 METP08581 1390 aa25.73■■□□□ 1.71
CHMP3-203ENST00000409225 ZNF326Q5BKZ1 582 aaKnown RBP25.72■■□□□ 1.71
CHMP3-203ENST00000409225 ADGRL3Q9HAR2 1447 aa25.71■■□□□ 1.71
CHMP3-203ENST00000409225 ROCK1Q13464 1354 aa25.7■■□□□ 1.71
CHMP3-203ENST00000409225 ADAMTS2O95450 1211 aa25.7■■□□□ 1.7
CHMP3-203ENST00000409225 NGLY1Q96IV0 654 aa25.69■■□□□ 1.7
CHMP3-203ENST00000409225 NALCNQ8IZF0 1738 aa25.66■■□□□ 1.7
CHMP3-203ENST00000409225 SPHKAPQ2M3C7 1700 aa25.63■■□□□ 1.69
CHMP3-203ENST00000409225 ITGAEP38570 1179 aa25.63■■□□□ 1.69
CHMP3-203ENST00000409225 ATAD2Q6PL18 1390 aa25.63■■□□□ 1.69
CHMP3-203ENST00000409225 C1orf167Q5SNV9 1468 aa25.63■■□□□ 1.69
CHMP3-203ENST00000409225 USP21Q9UK80 565 aa25.6■■□□□ 1.69
CHMP3-203ENST00000409225 NEXMIFQ5QGS0 1516 aa25.58■■□□□ 1.69
CHMP3-203ENST00000409225 SRCAPQ6ZRS2 3230 aa25.58■■□□□ 1.69
CHMP3-203ENST00000409225 ORAI2Q96SN7 254 aa25.57■■□□□ 1.68
CHMP3-203ENST00000409225 TRPC5Q9UL62 973 aaPredicted RBP25.57■■□□□ 1.68
CHMP3-203ENST00000409225 SOS2Q07890 1332 aaPredicted RBP25.56■■□□□ 1.68
CHMP3-203ENST00000409225 LAMC1P11047 1609 aa25.55■■□□□ 1.68
CHMP3-203ENST00000409225 CLTCL1P53675 1640 aa25.55■■□□□ 1.68
CHMP3-203ENST00000409225 ZRANB1Q9UGI0 708 aa25.53■■□□□ 1.68
CHMP3-203ENST00000409225 PTCH1Q13635 1447 aa25.53■■□□□ 1.68
CHMP3-203ENST00000409225 FNBP4Q8N3X1 1017 aaPredicted RBP25.52■■□□□ 1.68
CHMP3-203ENST00000409225 ROBO2Q9HCK4 1378 aa25.52■■□□□ 1.68
CHMP3-203ENST00000409225 ATRNO75882 1429 aa25.51■■□□□ 1.67
CHMP3-203ENST00000409225 FOXD1Q16676 465 aa25.5■■□□□ 1.67
CHMP3-203ENST00000409225 COL22A1Q8NFW1 1626 aaPredicted RBP25.46■■□□□ 1.67
CHMP3-203ENST00000409225 KIF1BO60333 1816 aa25.46■■□□□ 1.67
CHMP3-203ENST00000409225 MYOM2P54296 1465 aa25.43■■□□□ 1.66
CHMP3-203ENST00000409225 VGFO15240 615 aaPredicted RBP25.43■■□□□ 1.66
CHMP3-203ENST00000409225 BCL9LQ86UU0 1499 aa25.41■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms